Wall clock time and date at job start Tue Mar 31 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00533 * 2 1 4 4 H 1.48497 * 109.47018 * 240.00362 * 3 2 1 5 5 H 1.48498 * 109.46649 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47060 * 119.99860 * 3 2 1 7 7 C 1.37881 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99879 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46747 * 180.02562 * 9 7 2 11 11 O 1.42894 * 109.47207 * 60.00554 * 9 7 2 12 12 C 1.35479 * 117.00188 * 89.99809 * 11 9 7 13 13 N 1.32312 * 119.18207 * 0.27781 * 12 11 9 14 14 C 1.32296 * 120.77462 * 180.29400 * 13 12 11 15 15 C 1.38694 * 119.15711 * 359.43457 * 14 13 12 16 16 Cl 1.73601 * 120.74944 * 180.25763 * 15 14 13 17 17 C 1.38686 * 118.49996 * 0.28050 * 15 14 13 18 18 N 1.32303 * 119.15712 * 359.97438 * 17 15 14 19 19 C 1.50700 * 109.47238 * 300.00038 * 9 7 2 20 20 C 1.38233 * 119.99686 * 84.73052 * 19 9 7 21 21 C 1.38238 * 120.00112 * 179.78784 * 20 19 9 22 22 C 1.38241 * 119.99600 * 0.43934 * 21 20 19 23 23 C 1.38232 * 119.99969 * 359.81323 * 22 21 20 24 24 C 1.38229 * 120.00173 * 359.97438 * 23 22 21 25 25 H 0.97004 * 119.99465 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.42336 * 179.71710 * 14 13 12 27 27 H 1.07996 * 120.42601 * 180.02562 * 17 15 14 28 28 H 1.08006 * 120.00031 * 359.97438 * 20 19 9 29 29 H 1.07994 * 120.00472 * 180.27617 * 21 20 19 30 30 H 1.07998 * 119.99472 * 179.83379 * 22 21 20 31 31 H 1.07996 * 119.99883 * 180.02562 * 23 22 21 32 32 H 1.07998 * 120.00173 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 1.9592 -3.3277 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 0.9803 -3.1297 -2.2731 13 7 2.2263 -3.5718 -2.2203 14 6 2.7977 -4.1141 -3.2832 15 6 2.0696 -4.2264 -4.4584 16 17 2.7763 -4.9372 -5.8758 17 6 0.7645 -3.7577 -4.4756 18 7 0.2575 -3.2218 -3.3774 19 6 0.3849 -2.5792 1.2302 20 6 -0.8705 -2.0006 1.2308 21 6 -1.6666 -2.0778 2.3583 22 6 -1.2037 -2.7258 3.4882 23 6 0.0538 -3.2998 3.4894 24 6 0.8481 -3.2264 2.3605 25 1 -0.4849 0.8401 -0.0004 26 1 3.8166 -4.4690 -3.2351 27 1 0.1693 -3.8299 -5.3739 28 1 -1.2305 -1.4908 0.3493 29 1 -2.6492 -1.6296 2.3573 30 1 -1.8246 -2.7837 4.3699 31 1 0.4153 -3.8064 4.3720 32 1 1.8307 -3.6746 2.3615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226661089.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:01 Heat of formation + Delta-G solvation = 30.367745 kcal Electronic energy + Delta-G solvation = -20168.527496 eV Core-core repulsion = 16927.616923 eV Total energy + Delta-G solvation = -3240.910573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08968 -40.11552 -38.64003 -37.52330 -35.08056 -34.83542 -32.57295 -31.62062 -31.25102 -28.88156 -25.98518 -25.31779 -24.29407 -23.05570 -21.95998 -19.82459 -19.05657 -18.24715 -17.42568 -17.28051 -17.00371 -16.46973 -16.00748 -15.74897 -15.19080 -14.96830 -14.66446 -14.41162 -14.01583 -13.67687 -13.48235 -13.28760 -12.87886 -12.80663 -12.42482 -12.34723 -12.30057 -12.20420 -12.06437 -11.79968 -11.32652 -11.02499 -10.82566 -10.08373 -9.59058 -9.44865 -9.26600 -8.03946 -6.47400 -0.07777 0.07403 0.74243 0.93097 0.99906 1.35893 1.36360 1.43926 2.00157 2.31854 2.75067 3.03237 3.17637 3.29077 3.49960 3.77437 3.93140 4.30320 4.35137 4.48256 4.58874 4.64768 4.82533 4.94676 5.10120 5.16438 5.38795 5.54855 5.59938 5.77775 5.82822 5.91635 6.04622 6.26941 6.41331 6.50751 6.74545 7.18337 7.32938 8.75260 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.005323 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.639638 B = 5258.995401 C = 6231.056895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.249 3.751 10 H 0.051 0.949 11 O -0.288 6.288 12 C 0.501 3.499 13 N -0.570 5.570 14 C 0.197 3.803 15 C -0.201 4.201 16 Cl -0.027 7.027 17 C 0.200 3.800 18 N -0.554 5.554 19 C -0.077 4.077 20 C -0.070 4.070 21 C -0.158 4.158 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.134 4.134 25 H 0.265 0.735 26 H 0.204 0.796 27 H 0.211 0.789 28 H 0.135 0.865 29 H 0.122 0.878 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -8.140 -4.546 9.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.166 4.166 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.195 3.805 10 H 0.069 0.931 11 O -0.187 6.187 12 C 0.202 3.798 13 N -0.301 5.301 14 C 0.030 3.970 15 C -0.234 4.234 16 Cl 0.001 6.999 17 C 0.033 3.967 18 N -0.282 5.282 19 C -0.078 4.078 20 C -0.089 4.089 21 C -0.177 4.177 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.153 4.153 25 H 0.075 0.925 26 H 0.220 0.780 27 H 0.227 0.773 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.361 -7.497 -3.628 8.439 hybrid contribution 1.048 0.780 -0.876 1.573 sum 2.409 -6.717 -4.504 8.438 Atomic orbital electron populations 1.70006 1.06624 1.26983 1.45716 1.25750 0.95717 1.02179 0.92961 0.85719 0.78674 0.79191 0.78713 1.20263 1.20349 1.19346 1.21445 0.93026 0.91033 1.53212 0.92234 1.18987 0.87196 0.96487 0.77826 0.93114 1.86352 1.43416 1.70537 1.18370 1.21330 0.84898 0.85679 0.87910 1.68344 1.11828 1.17366 1.32519 1.23542 1.00519 0.87902 0.85043 1.22436 0.97596 1.10650 0.92715 1.98352 1.83213 1.81846 1.36450 1.23616 0.91375 0.86376 0.95356 1.67814 1.38912 1.22132 0.99329 1.19938 0.94893 0.97318 0.95613 1.21687 0.93600 0.93707 0.99899 1.21395 1.00221 1.01695 0.94351 1.21302 0.96658 0.99022 0.98294 1.21165 0.94874 1.01904 0.97987 1.21005 1.00084 1.00590 0.93581 0.92488 0.77974 0.77250 0.84802 0.85987 0.84057 0.83840 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.91 8.50 21.45 0.18 -46.73 16 2 C 0.04 2.10 5.24 84.66 0.44 2.54 16 3 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -29.96 8.89 25.60 0.23 -29.73 16 8 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 9 C 0.25 12.77 2.34 29.10 0.07 12.84 16 10 H 0.05 2.55 6.86 -2.38 -0.02 2.53 16 11 O -0.29 -15.19 8.39 -87.78 -0.74 -15.92 16 12 C 0.50 23.16 8.45 180.57 1.53 24.68 16 13 N -0.57 -23.38 8.66 -313.39 -2.71 -26.09 16 14 C 0.20 5.97 11.12 84.73 0.94 6.91 16 15 C -0.20 -5.40 6.36 22.49 0.14 -5.25 16 16 Cl -0.03 -0.54 29.02 -2.72 -0.08 -0.62 16 17 C 0.20 5.93 11.12 84.73 0.94 6.87 16 18 N -0.55 -22.70 10.46 -313.39 -3.28 -25.98 16 19 C -0.08 -3.74 4.80 -19.87 -0.10 -3.84 16 20 C -0.07 -3.38 7.46 22.27 0.17 -3.21 16 21 C -0.16 -6.41 10.05 22.27 0.22 -6.18 16 22 C -0.13 -4.70 10.05 22.27 0.22 -4.47 16 23 C -0.14 -4.98 10.05 22.27 0.22 -4.76 16 24 C -0.13 -5.60 9.68 22.27 0.22 -5.39 16 25 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 26 H 0.20 4.49 8.06 -2.91 -0.02 4.47 16 27 H 0.21 4.35 8.06 -2.91 -0.02 4.33 16 28 H 0.13 7.25 5.50 -2.91 -0.02 7.24 16 29 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 31 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -64.14 298.33 1.81 -62.34 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.15 Total: 16.98 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 5.25 Total: -8.99 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -5.81 Total: -98.80 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.74 Total: -15.92 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -64.14 1.81 -62.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226661089.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.706 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds