Wall clock time and date at job start Tue Mar 31 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 117.00007 * 2 1 4 4 C 1.38566 * 120.06273 * 359.72699 * 3 2 1 5 5 C 1.38342 * 119.98185 * 179.74265 * 4 3 2 6 6 Cl 1.73594 * 119.93909 * 180.27710 * 5 4 3 7 7 C 1.38357 * 120.12081 * 0.51102 * 5 4 3 8 8 C 1.38242 * 120.13471 * 359.76296 * 7 5 4 9 9 C 1.38559 * 120.01075 * 359.97438 * 8 7 5 10 10 O 1.36013 * 120.06230 * 179.97438 * 9 8 7 11 11 C 1.42904 * 116.99716 * 1.91569 * 10 9 8 12 12 H 1.09000 * 109.47241 * 22.37501 * 11 10 9 13 13 C 1.50703 * 109.47393 * 142.38367 * 11 10 9 14 14 H 1.07997 * 119.99693 * 25.65858 * 13 11 10 15 15 C 1.37869 * 119.99895 * 205.66052 * 13 11 10 16 16 N 1.31517 * 119.99869 * 185.08747 * 15 13 11 17 17 Si 1.86801 * 120.00248 * 5.08986 * 15 13 11 18 18 H 1.48499 * 109.47485 * 94.41077 * 17 15 13 19 19 H 1.48507 * 109.47197 * 214.41405 * 17 15 13 20 20 H 1.48501 * 109.47015 * 334.40741 * 17 15 13 21 21 C 1.53003 * 109.47045 * 262.37919 * 11 10 9 22 22 Cl 1.80306 * 109.46771 * 63.09795 * 21 11 10 23 23 H 1.09002 * 109.47530 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47297 * 59.99559 * 1 2 3 25 25 H 1.09003 * 109.47323 * 300.00020 * 1 2 3 26 26 H 1.07998 * 120.01148 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.93616 * 179.74766 * 7 5 4 28 28 H 1.07999 * 119.99394 * 179.97438 * 8 7 5 29 29 H 0.96997 * 119.99726 * 180.02562 * 16 15 13 30 30 H 1.08994 * 109.47650 * 183.09582 * 21 11 10 31 31 H 1.08998 * 109.47523 * 303.10665 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2930 2.3747 -0.0057 5 6 1.9228 3.6064 -0.0003 6 17 0.9778 5.0626 -0.0002 7 6 3.3044 3.6799 0.0001 8 6 4.0609 2.5228 0.0001 9 6 3.4358 1.2862 0.0002 10 8 4.1791 0.1471 -0.0004 11 6 5.5994 0.2992 0.0415 12 1 5.8481 1.2754 0.4578 13 6 6.1952 -0.7821 0.9057 14 1 5.6731 -1.7185 1.0356 15 6 7.4069 -0.5760 1.5304 16 7 7.9750 -1.5534 2.2023 17 14 8.2415 1.0917 1.4226 18 1 7.8783 1.9049 2.6109 19 1 9.7144 0.9063 1.3811 20 1 7.7956 1.7896 0.1900 21 6 6.1661 0.1897 -1.3755 22 17 5.5233 1.5379 -2.3856 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 0.5138 0.8900 26 1 0.2144 2.3196 -0.0106 27 1 3.7929 4.6431 0.0002 28 1 5.1392 2.5827 0.0000 29 1 8.8272 -1.4083 2.6422 30 1 7.2537 0.2507 -1.3376 31 1 5.8706 -0.7642 -1.8123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227365278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:26 Heat of formation + Delta-G solvation = -64.177828 kcal Electronic energy + Delta-G solvation = -18946.527832 eV Core-core repulsion = 15666.791854 eV Total energy + Delta-G solvation = -3279.735978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.22865 -38.20839 -37.10676 -35.81393 -35.16679 -33.29208 -30.83707 -30.15964 -29.04634 -27.03260 -25.35611 -23.03638 -22.12510 -20.46199 -18.64156 -17.28782 -16.81112 -16.26787 -15.69314 -15.07429 -14.99114 -14.55083 -14.41740 -13.75443 -13.29331 -13.22557 -12.95193 -12.84280 -12.34381 -12.23714 -11.84181 -11.45254 -11.28498 -11.11444 -11.09264 -10.82708 -10.74793 -10.56012 -10.10367 -9.85624 -9.62808 -9.38687 -8.92003 -8.44017 -7.33228 -6.47990 -4.54431 1.44636 1.57437 2.28762 2.91870 3.04671 3.08975 3.14313 3.47430 3.88818 3.90853 4.03931 4.83378 4.97359 5.11634 5.18332 5.24087 5.44370 5.45339 5.55747 5.64780 5.83093 5.91767 5.96981 6.11261 6.34586 6.50830 6.55070 6.81504 7.12236 7.40717 7.88173 8.30609 8.67385 9.07909 10.62794 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.005872 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.337922 B = 4767.600838 C = 5172.121431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.096 3.904 4 C -0.168 4.168 5 C -0.050 4.050 6 Cl -0.085 7.085 7 C -0.102 4.102 8 C -0.161 4.161 9 C 0.141 3.859 10 O -0.283 6.283 11 C 0.176 3.824 12 H 0.050 0.950 13 C -0.525 4.525 14 H 0.092 0.908 15 C 0.086 3.914 16 N -0.870 5.870 17 Si 0.857 3.143 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.255 1.255 21 C -0.039 4.039 22 Cl -0.229 7.229 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.147 0.853 29 H 0.273 0.727 30 H 0.096 0.904 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 8.456 -4.803 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.210 6.210 3 C 0.050 3.950 4 C -0.188 4.188 5 C -0.077 4.077 6 Cl -0.057 7.057 7 C -0.121 4.121 8 C -0.180 4.180 9 C 0.093 3.907 10 O -0.196 6.196 11 C 0.120 3.880 12 H 0.067 0.933 13 C -0.562 4.562 14 H 0.110 0.890 15 C -0.120 4.120 16 N -0.505 5.505 17 Si 0.682 3.318 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.179 1.179 21 C -0.102 4.102 22 Cl -0.203 7.203 23 H 0.117 0.883 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.155 0.845 27 H 0.148 0.852 28 H 0.164 0.836 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.341 8.188 -4.762 14.024 hybrid contribution 0.417 1.272 -0.049 1.339 sum -9.924 9.460 -4.811 14.530 Atomic orbital electron populations 1.23039 0.79245 1.03780 1.00871 1.86263 1.20383 1.25341 1.89028 1.18048 0.89260 0.84653 1.03001 1.20710 0.99947 0.89971 1.08141 1.20276 0.91421 0.86400 1.09570 1.98323 1.73020 1.37003 1.97342 1.20658 0.91178 0.98805 1.01487 1.21206 1.01222 0.90557 1.05042 1.18474 0.88457 0.87481 0.96302 1.86353 1.20573 1.26609 1.86020 1.20909 0.75844 0.99759 0.91475 0.93280 1.20725 1.05345 1.01608 1.28512 0.88962 1.24904 0.96396 0.96866 0.93856 1.69840 1.17422 1.31565 1.31655 0.87146 0.79928 0.84653 0.80117 1.19144 1.20048 1.17930 1.26054 1.01088 0.90139 0.92871 1.98671 1.89710 1.56513 1.75447 0.88322 0.93019 0.92932 0.84470 0.85172 0.83579 0.91617 0.88522 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.11 10.28 -34.26 -0.35 -5.46 16 3 C 0.10 1.70 6.70 -39.12 -0.26 1.44 16 4 C -0.17 -2.52 8.82 -39.42 -0.35 -2.87 16 5 C -0.05 -0.75 6.32 -39.50 -0.25 -1.00 16 6 Cl -0.09 -1.10 28.95 -51.86 -1.50 -2.60 16 7 C -0.10 -1.60 9.82 -39.54 -0.39 -1.99 16 8 C -0.16 -2.91 7.26 -39.46 -0.29 -3.20 16 9 C 0.14 2.79 6.09 -39.13 -0.24 2.55 16 10 O -0.28 -6.39 9.46 -34.31 -0.32 -6.71 16 11 C 0.18 3.94 1.70 -27.88 -0.05 3.90 16 12 H 0.05 1.09 2.90 -51.93 -0.15 0.94 16 13 C -0.52 -13.75 9.23 -34.44 -0.32 -14.06 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.09 2.25 5.47 -17.82 -0.10 2.15 16 16 N -0.87 -24.26 13.96 55.43 0.77 -23.48 16 17 Si 0.86 18.86 26.38 -169.99 -4.48 14.38 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.26 -5.21 5.98 56.52 0.34 -4.87 16 21 C -0.04 -0.77 5.96 37.16 0.22 -0.55 16 22 Cl -0.23 -4.21 25.88 -51.86 -1.34 -5.55 16 23 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 25 H 0.05 0.52 7.68 -51.93 -0.40 0.13 16 26 H 0.14 1.68 6.30 -52.49 -0.33 1.35 16 27 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.15 2.70 5.07 -52.49 -0.27 2.43 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.10 1.87 6.92 -51.93 -0.36 1.51 16 31 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 289.50 15.07 4.36 4.36 Total: -1.00 -27.89 289.50 -6.68 -34.57 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -2.79 Total: 2.82 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.02 Total: -12.33 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.77 Total: -23.48 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.68 Total: -12.17 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.48 Total: 14.38 kcal Atomic # 17 Polarization: -5.30 SS G_CDS: -2.84 Total: -8.15 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.89 -6.68 -34.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227365278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.607 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds