Wall clock time and date at job start Tue Mar 31 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 117.00007 * 2 1 4 4 C 1.38566 * 120.06273 * 359.72699 * 3 2 1 5 5 C 1.38342 * 119.98185 * 179.74265 * 4 3 2 6 6 Cl 1.73594 * 119.93909 * 180.27710 * 5 4 3 7 7 C 1.38357 * 120.12081 * 0.51102 * 5 4 3 8 8 C 1.38242 * 120.13471 * 359.76296 * 7 5 4 9 9 C 1.38559 * 120.01075 * 359.97438 * 8 7 5 10 10 O 1.36013 * 120.06230 * 179.97438 * 9 8 7 11 11 C 1.42904 * 116.99716 * 1.91569 * 10 9 8 12 12 H 1.09000 * 109.47241 * 22.37501 * 11 10 9 13 13 C 1.50703 * 109.47393 * 142.38367 * 11 10 9 14 14 H 1.07997 * 119.99693 * 25.65858 * 13 11 10 15 15 C 1.37869 * 119.99895 * 205.66052 * 13 11 10 16 16 N 1.31517 * 119.99869 * 185.08747 * 15 13 11 17 17 Si 1.86801 * 120.00248 * 5.08986 * 15 13 11 18 18 H 1.48499 * 109.47485 * 94.41077 * 17 15 13 19 19 H 1.48507 * 109.47197 * 214.41405 * 17 15 13 20 20 H 1.48501 * 109.47015 * 334.40741 * 17 15 13 21 21 C 1.53003 * 109.47045 * 262.37919 * 11 10 9 22 22 Cl 1.80306 * 109.46771 * 63.09795 * 21 11 10 23 23 H 1.09002 * 109.47530 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47297 * 59.99559 * 1 2 3 25 25 H 1.09003 * 109.47323 * 300.00020 * 1 2 3 26 26 H 1.07998 * 120.01148 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.93616 * 179.74766 * 7 5 4 28 28 H 1.07999 * 119.99394 * 179.97438 * 8 7 5 29 29 H 0.96997 * 119.99726 * 180.02562 * 16 15 13 30 30 H 1.08994 * 109.47650 * 183.09582 * 21 11 10 31 31 H 1.08998 * 109.47523 * 303.10665 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2930 2.3747 -0.0057 5 6 1.9228 3.6064 -0.0003 6 17 0.9778 5.0626 -0.0002 7 6 3.3044 3.6799 0.0001 8 6 4.0609 2.5228 0.0001 9 6 3.4358 1.2862 0.0002 10 8 4.1791 0.1471 -0.0004 11 6 5.5994 0.2992 0.0415 12 1 5.8481 1.2754 0.4578 13 6 6.1952 -0.7821 0.9057 14 1 5.6731 -1.7185 1.0356 15 6 7.4069 -0.5760 1.5304 16 7 7.9750 -1.5534 2.2023 17 14 8.2415 1.0917 1.4226 18 1 7.8783 1.9049 2.6109 19 1 9.7144 0.9063 1.3811 20 1 7.7956 1.7896 0.1900 21 6 6.1661 0.1897 -1.3755 22 17 5.5233 1.5379 -2.3856 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 0.5138 0.8900 26 1 0.2144 2.3196 -0.0106 27 1 3.7929 4.6431 0.0002 28 1 5.1392 2.5827 0.0000 29 1 8.8272 -1.4083 2.6422 30 1 7.2537 0.2507 -1.3376 31 1 5.8706 -0.7642 -1.8123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227365278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:25 Heat of formation + Delta-G solvation = -80.283728 kcal Electronic energy + Delta-G solvation = -18947.226236 eV Core-core repulsion = 15666.791854 eV Total energy + Delta-G solvation = -3280.434382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.55665 -39.62673 -38.33204 -37.05158 -36.68041 -35.19912 -32.54497 -31.42379 -30.37646 -28.06331 -27.22735 -24.48734 -23.40330 -22.02569 -20.09118 -18.96416 -18.33002 -17.63776 -16.95771 -16.56775 -16.24755 -15.99457 -15.83056 -15.24780 -14.75327 -14.67260 -14.64414 -14.16313 -13.74146 -13.41516 -13.33834 -12.93808 -12.81372 -12.55918 -12.27174 -12.20765 -11.96530 -11.87780 -11.78303 -11.47903 -11.17766 -11.07908 -10.83279 -9.69818 -8.69897 -8.48490 -6.61886 0.16805 0.29840 1.12011 1.25624 1.32269 1.38583 1.40358 2.18816 2.37048 2.41067 2.59283 2.89061 3.73938 3.93610 3.98581 4.09489 4.14644 4.20290 4.40134 4.42351 4.43996 4.59243 4.72528 4.83202 4.90409 5.11354 5.16913 5.31154 5.52736 5.89056 6.28363 6.49381 6.76136 7.06468 8.66848 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.005872 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.337922 B = 4767.600838 C = 5172.121431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.088 3.912 4 C -0.159 4.159 5 C -0.045 4.045 6 Cl -0.059 7.059 7 C -0.103 4.103 8 C -0.166 4.166 9 C 0.100 3.900 10 O -0.311 6.311 11 C 0.183 3.817 12 H 0.057 0.943 13 C -0.538 4.538 14 H 0.041 0.959 15 C 0.037 3.963 16 N -0.920 5.920 17 Si 0.919 3.081 18 H -0.262 1.262 19 H -0.268 1.268 20 H -0.228 1.228 21 C -0.036 4.036 22 Cl -0.206 7.206 23 H 0.115 0.885 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.167 0.833 27 H 0.155 0.845 28 H 0.140 0.860 29 H 0.278 0.722 30 H 0.105 0.895 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.604 11.508 -5.711 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.042 3.958 4 C -0.178 4.178 5 C -0.072 4.072 6 Cl -0.031 7.031 7 C -0.122 4.122 8 C -0.185 4.185 9 C 0.053 3.947 10 O -0.225 6.225 11 C 0.127 3.873 12 H 0.074 0.926 13 C -0.576 4.576 14 H 0.060 0.940 15 C -0.165 4.165 16 N -0.557 5.557 17 Si 0.740 3.260 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.151 1.151 21 C -0.099 4.099 22 Cl -0.180 7.180 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.184 0.816 27 H 0.172 0.828 28 H 0.158 0.842 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.558 11.254 -5.689 17.105 hybrid contribution 0.528 0.353 0.217 0.671 sum -11.030 11.607 -5.472 16.921 Atomic orbital electron populations 1.23396 0.76425 1.05600 1.02446 1.86222 1.23445 1.25671 1.89059 1.18248 0.88898 0.85742 1.02908 1.20983 1.01229 0.89011 1.06600 1.20443 0.91620 0.87417 1.07684 1.98340 1.72254 1.35350 1.97124 1.20897 0.91579 0.98962 1.00731 1.21199 1.01097 0.90771 1.05410 1.18855 0.89336 0.87200 0.99260 1.86269 1.20314 1.28615 1.87305 1.20659 0.76293 0.98280 0.92037 0.92577 1.20816 1.05659 1.01045 1.30038 0.94032 1.25735 0.96812 1.00860 0.93060 1.69975 1.18293 1.34156 1.33251 0.86155 0.78918 0.79636 0.81327 1.18677 1.19290 1.15095 1.25671 1.01255 0.90829 0.92102 1.98665 1.89593 1.55271 1.74492 0.86640 0.91188 0.91389 0.81571 0.82762 0.84230 0.91278 0.87712 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -11.22 10.28 -79.66 -0.82 -12.04 16 3 C 0.09 3.04 6.70 22.57 0.15 3.19 16 4 C -0.16 -4.33 8.82 22.37 0.20 -4.14 16 5 C -0.04 -1.19 6.32 22.32 0.14 -1.05 16 6 Cl -0.06 -1.30 28.95 -2.72 -0.08 -1.38 16 7 C -0.10 -2.93 9.82 22.30 0.22 -2.72 16 8 C -0.17 -5.75 7.26 22.35 0.16 -5.59 16 9 C 0.10 3.95 6.09 22.56 0.14 4.08 16 10 O -0.31 -14.46 9.46 -79.81 -0.75 -15.21 16 11 C 0.18 8.34 1.70 29.85 0.05 8.39 16 12 H 0.06 2.46 2.90 -2.39 -0.01 2.45 16 13 C -0.54 -29.55 9.23 25.60 0.24 -29.31 16 14 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 15 C 0.04 2.00 5.47 84.65 0.46 2.46 16 16 N -0.92 -53.32 13.96 21.44 0.30 -53.02 16 17 Si 0.92 38.62 26.38 68.60 1.81 40.43 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.23 -8.50 5.98 99.48 0.59 -7.91 16 21 C -0.04 -1.41 5.96 71.98 0.43 -0.98 16 22 Cl -0.21 -7.24 25.88 -2.72 -0.07 -7.31 16 23 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.07 1.18 7.65 -2.39 -0.02 1.16 16 25 H 0.07 1.19 7.68 -2.39 -0.02 1.17 16 26 H 0.17 3.44 6.30 -2.91 -0.02 3.42 16 27 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.14 4.93 5.07 -2.91 -0.01 4.92 16 29 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.10 3.95 6.92 -2.39 -0.02 3.93 16 31 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 Total: -1.00 -62.85 289.50 4.75 -58.10 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.06 Total: 14.67 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 3.30 Total: -24.23 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.30 Total: -53.02 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.57 Total: -27.25 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.81 Total: 40.43 kcal Atomic # 17 Polarization: -8.54 SS G_CDS: -0.15 Total: -8.69 kcal Total: -62.85 4.75 -58.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227365278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.182 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds