Wall clock time and date at job start Tue Mar 31 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99687 * 2 1 4 4 C 1.38769 * 120.02126 * 359.97438 * 3 2 1 5 5 C 1.38266 * 120.03968 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.95846 * 179.97438 * 5 4 3 7 7 C 1.38310 * 120.08622 * 359.97438 * 5 4 3 8 8 C 1.38729 * 120.04269 * 0.02562 * 7 5 4 9 9 O 1.35898 * 120.02289 * 180.02562 * 8 7 5 10 10 C 1.42900 * 116.99764 * 176.49575 * 9 8 7 11 11 H 1.09004 * 109.47426 * 26.98493 * 10 9 8 12 12 C 1.50701 * 109.46973 * 146.98333 * 10 9 8 13 13 H 1.07997 * 119.99873 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99955 * 179.97438 * 12 10 9 15 15 N 1.31509 * 120.00051 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99826 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47050 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46930 * 120.00349 * 16 14 12 19 19 H 1.48505 * 109.46837 * 240.00065 * 16 14 12 20 20 C 1.52995 * 109.47297 * 266.97926 * 10 9 8 21 21 Cl 1.80307 * 109.46678 * 65.00117 * 20 10 9 22 22 C 1.38619 * 120.01852 * 180.02562 * 3 2 1 23 23 H 1.08995 * 109.47324 * 60.00583 * 1 2 3 24 24 H 1.09007 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47471 * 300.00058 * 1 2 3 26 26 H 1.07999 * 119.98032 * 359.74697 * 4 3 2 27 27 H 1.08006 * 119.98443 * 179.97438 * 7 5 4 28 28 H 0.96997 * 120.00412 * 179.97438 * 15 14 12 29 29 H 1.08994 * 109.47428 * 185.00119 * 20 10 9 30 30 H 1.09000 * 109.47134 * 305.00403 * 20 10 9 31 31 H 1.08006 * 120.04333 * 359.95146 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2905 2.3750 -0.0005 5 6 1.9178 3.6072 -0.0011 6 17 0.9707 5.0621 -0.0024 7 6 3.2989 3.6822 -0.0005 8 6 4.0575 2.5207 0.0000 9 8 5.4144 2.5948 0.0010 10 6 6.1314 1.3612 0.0794 11 1 5.5235 0.5602 -0.3414 12 6 7.4172 1.4773 -0.6981 13 1 7.6620 2.4006 -1.2019 14 6 8.2810 0.4047 -0.7661 15 7 7.9825 -0.7198 -0.1529 16 14 9.8744 0.5484 -1.7304 17 1 9.9736 1.9065 -2.3229 18 1 11.0258 0.3204 -0.8207 19 1 9.8907 -0.4673 -2.8137 20 6 6.4472 1.0468 1.5430 21 17 4.9101 0.7630 2.4418 22 6 3.4302 1.2840 -0.0005 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2120 2.3184 -0.0051 27 1 3.7871 4.6455 -0.0014 28 1 8.5900 -1.4745 -0.2011 29 1 7.0697 0.1538 1.5967 30 1 6.9788 1.8876 1.9887 31 1 4.0195 0.3788 -0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227897215.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:16 Heat of formation + Delta-G solvation = -84.261612 kcal Electronic energy + Delta-G solvation = -18753.655768 eV Core-core repulsion = 15473.048892 eV Total energy + Delta-G solvation = -3280.606876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47498 -39.97910 -38.23215 -37.04411 -36.48567 -35.30426 -31.82711 -31.52425 -30.14714 -28.10409 -27.28195 -24.62491 -23.27913 -22.15988 -19.87480 -18.83147 -17.68728 -17.41733 -17.08023 -16.77794 -16.50621 -16.13227 -15.73369 -15.32706 -14.89035 -14.50044 -14.19903 -13.83439 -13.62762 -13.31409 -13.05727 -12.90999 -12.79464 -12.70072 -12.52979 -12.28746 -12.03328 -11.98024 -11.63201 -11.38777 -11.16724 -10.86844 -10.58154 -9.33380 -9.07846 -8.37571 -6.53504 0.15434 0.39244 0.95210 1.39772 1.44716 1.57174 1.60583 2.25018 2.31683 2.60521 2.69698 2.97718 3.95443 4.04344 4.10239 4.16358 4.32354 4.37680 4.41179 4.43012 4.49802 4.73569 4.80259 5.01478 5.11873 5.17184 5.34994 5.48030 5.56536 5.82298 6.33685 6.44995 6.74485 7.18762 8.69518 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.005130 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.457133 B = 5457.129140 C = 5983.201247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.172 3.828 4 C -0.240 4.240 5 C 0.040 3.960 6 Cl -0.048 7.048 7 C -0.199 4.199 8 C 0.181 3.819 9 O -0.317 6.317 10 C 0.209 3.791 11 H 0.034 0.966 12 C -0.548 4.548 13 H 0.069 0.931 14 C 0.027 3.973 15 N -0.909 5.909 16 Si 0.978 3.022 17 H -0.267 1.267 18 H -0.271 1.271 19 H -0.275 1.275 20 C -0.027 4.027 21 Cl -0.222 7.222 22 C -0.239 4.239 23 H 0.071 0.929 24 H 0.121 0.879 25 H 0.068 0.932 26 H 0.164 0.836 27 H 0.144 0.856 28 H 0.276 0.724 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 3.974 0.779 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.126 3.874 4 C -0.259 4.259 5 C 0.013 3.987 6 Cl -0.019 7.019 7 C -0.218 4.218 8 C 0.134 3.866 9 O -0.230 6.230 10 C 0.154 3.846 11 H 0.052 0.948 12 C -0.585 4.585 13 H 0.087 0.913 14 C -0.174 4.174 15 N -0.546 5.546 16 Si 0.802 3.198 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.201 1.201 20 C -0.090 4.090 21 Cl -0.196 7.196 22 C -0.258 4.258 23 H 0.089 0.911 24 H 0.139 0.861 25 H 0.086 0.914 26 H 0.182 0.818 27 H 0.162 0.838 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.097 0.903 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.742 3.860 0.878 13.343 hybrid contribution 0.631 -0.212 -0.211 0.698 sum -12.111 3.649 0.667 12.666 Atomic orbital electron populations 1.23444 0.75911 1.05863 1.02685 1.86113 1.24011 1.26130 1.88186 1.18440 0.90782 0.84743 0.93452 1.21020 1.01434 0.89476 1.13973 1.20128 0.90409 0.87855 1.00305 1.98350 1.71460 1.35389 1.96703 1.20169 0.91664 0.97663 1.12320 1.18715 0.83751 0.92779 0.91390 1.86110 1.14287 1.36192 1.86453 1.20382 0.91430 0.81032 0.91741 0.94829 1.21261 1.03799 1.00626 1.32823 0.91303 1.25723 1.01697 0.93976 0.96004 1.69887 1.38539 1.03519 1.42667 0.85184 0.77835 0.78553 0.78238 1.19146 1.19638 1.20069 1.25422 0.85372 1.04992 0.93235 1.98643 1.43415 1.97521 1.79985 1.20650 0.93443 0.98275 1.13478 0.91080 0.86085 0.91363 0.81826 0.83821 0.91425 0.86363 0.90320 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -10.23 10.50 -92.43 -0.97 -11.20 16 3 C 0.17 5.85 6.68 22.49 0.15 6.01 16 4 C -0.24 -6.84 8.82 22.40 0.20 -6.64 16 5 C 0.04 1.20 6.31 22.29 0.14 1.34 16 6 Cl -0.05 -1.16 28.95 -2.72 -0.08 -1.24 16 7 C -0.20 -6.96 9.76 22.40 0.22 -6.74 16 8 C 0.18 7.47 5.96 22.49 0.13 7.60 16 9 O -0.32 -14.86 9.73 -92.40 -0.90 -15.76 16 10 C 0.21 10.38 2.19 29.85 0.07 10.44 16 11 H 0.03 1.81 5.39 -2.38 -0.01 1.80 16 12 C -0.55 -28.80 8.89 25.60 0.23 -28.57 16 13 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 14 C 0.03 1.39 5.29 84.66 0.45 1.84 16 15 N -0.91 -47.43 11.29 21.45 0.24 -47.19 16 16 Si 0.98 40.29 29.54 68.60 2.03 42.32 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 20 C -0.03 -1.26 6.17 71.98 0.44 -0.82 16 21 Cl -0.22 -9.29 25.61 -2.72 -0.07 -9.36 16 22 C -0.24 -9.69 6.98 22.46 0.16 -9.54 16 23 H 0.07 1.10 7.65 -2.39 -0.02 1.08 16 24 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 26 H 0.16 3.51 6.29 -2.91 -0.02 3.49 16 27 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 28 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 29 H 0.12 5.88 5.95 -2.39 -0.01 5.87 16 30 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.13 5.73 5.11 -2.91 -0.01 5.71 16 Total: -1.00 -56.27 292.34 4.72 -51.56 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.17 Total: 14.57 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.30 Total: -23.69 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.24 Total: -47.19 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.87 Total: -26.96 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 17 Polarization: -10.45 SS G_CDS: -0.15 Total: -10.60 kcal Total: -56.27 4.72 -51.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227897215.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.705 kcal (2) G-P(sol) polarization free energy of solvation -56.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds