Wall clock time and date at job start Tue Mar 31 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76201 * 99.99955 * 2 1 4 4 N 1.32535 * 119.16123 * 359.97438 * 3 2 1 5 5 C 1.32874 * 120.78096 * 180.02562 * 4 3 2 6 6 O 1.35537 * 120.42651 * 179.97438 * 5 4 3 7 7 C 1.39063 * 119.14370 * 0.02562 * 5 4 3 8 8 C 1.39027 * 118.47206 * 359.97438 * 7 5 4 9 9 O 1.35531 * 120.42719 * 180.27200 * 8 7 5 10 10 C 1.42906 * 116.99875 * 179.71981 * 9 8 7 11 11 H 1.09000 * 109.46696 * 30.00157 * 10 9 8 12 12 C 1.50700 * 109.47154 * 150.00270 * 10 9 8 13 13 H 1.07995 * 119.99584 * 34.99409 * 12 10 9 14 14 C 1.37873 * 120.00017 * 214.99626 * 12 10 9 15 15 N 1.31516 * 119.99783 * 184.83427 * 14 12 10 16 16 Si 1.86797 * 120.00057 * 4.82791 * 14 12 10 17 17 H 1.48493 * 109.47451 * 84.81143 * 16 14 12 18 18 H 1.48506 * 109.47208 * 204.81270 * 16 14 12 19 19 H 1.48499 * 109.47221 * 324.80958 * 16 14 12 20 20 C 1.53003 * 109.46976 * 270.00452 * 10 9 8 21 21 Cl 1.80297 * 109.47265 * 65.71454 * 20 10 9 22 22 N 1.32504 * 119.16281 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.47183 * 60.00276 * 1 2 3 24 24 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47693 * 299.99925 * 1 2 3 26 26 H 0.96697 * 113.99927 * 90.00188 * 6 5 4 27 27 H 1.08008 * 120.76604 * 180.02562 * 7 5 4 28 28 H 0.97004 * 119.99877 * 179.97438 * 15 14 12 29 29 H 1.09010 * 109.46707 * 185.71237 * 20 10 9 30 30 H 1.08991 * 109.47136 * 305.71090 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0883 2.5722 -0.0005 5 6 1.2820 3.8868 -0.0010 6 8 0.2258 4.7361 -0.0021 7 6 2.5823 4.3798 -0.0016 8 6 3.6353 3.4720 -0.0010 9 8 4.9182 3.9089 0.0040 10 6 5.9428 2.9128 0.0105 11 1 5.5852 2.0205 -0.5034 12 6 7.1640 3.4436 -0.6953 13 1 7.4231 4.4888 -0.6136 14 6 7.9502 2.5949 -1.4452 15 7 9.0666 3.0358 -1.9826 16 14 7.4299 0.8187 -1.6977 17 1 6.4896 0.7364 -2.8440 18 1 8.6277 -0.0128 -1.9793 19 1 6.7589 0.3202 -0.4703 20 6 6.3018 2.5598 1.4553 21 17 4.8891 1.7701 2.2499 22 7 3.3676 2.1702 -0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.0812 4.9831 0.8810 27 1 2.7699 5.4434 -0.0016 28 1 9.6200 2.4386 -2.5099 29 1 7.1512 1.8766 1.4621 30 1 6.5623 3.4688 1.9974 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228090943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:07 Heat of formation + Delta-G solvation = -61.861842 kcal Electronic energy + Delta-G solvation = -18926.545277 eV Core-core repulsion = 15681.246186 eV Total energy + Delta-G solvation = -3245.299091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.18947 -39.94170 -38.33689 -36.71224 -35.34769 -33.76667 -32.85841 -31.61648 -29.73155 -27.30787 -25.82951 -25.15013 -22.84615 -20.79052 -19.46047 -19.32456 -18.20570 -17.66538 -17.21311 -16.76014 -16.46837 -15.90818 -15.50308 -15.22312 -15.08745 -14.81183 -14.72456 -14.16968 -13.83122 -13.50979 -13.37084 -13.14159 -12.96180 -12.64971 -12.07724 -11.94685 -11.75443 -11.55904 -11.33839 -11.22328 -11.06907 -10.95854 -10.49850 -10.13809 -8.84644 -8.54831 -6.68968 -0.30952 0.02561 0.14683 1.20016 1.23684 1.31312 1.41294 1.43990 1.91557 2.15892 2.42252 2.59643 2.85212 3.44339 3.66786 4.07470 4.11436 4.18284 4.23879 4.36928 4.39467 4.43784 4.87305 4.89898 4.98292 5.14556 5.74006 5.85595 6.34486 6.46518 6.51304 6.77485 7.00840 8.59085 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.006581 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.965218 B = 4253.628677 C = 4727.402902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.013 6.013 3 C 0.341 3.659 4 N -0.573 5.573 5 C 0.402 3.598 6 O -0.468 6.468 7 C -0.281 4.281 8 C 0.380 3.620 9 O -0.299 6.299 10 C 0.187 3.813 11 H 0.061 0.939 12 C -0.537 4.537 13 H 0.053 0.947 14 C 0.047 3.953 15 N -0.911 5.911 16 Si 0.918 3.082 17 H -0.270 1.270 18 H -0.267 1.267 19 H -0.240 1.240 20 C -0.032 4.032 21 Cl -0.201 7.201 22 N -0.563 5.563 23 H 0.088 0.912 24 H 0.135 0.865 25 H 0.092 0.908 26 H 0.431 0.569 27 H 0.171 0.829 28 H 0.279 0.721 29 H 0.102 0.898 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.213 -4.197 6.697 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.220 5.780 3 C -0.035 4.035 4 N -0.308 5.308 5 C 0.214 3.786 6 O -0.280 6.280 7 C -0.308 4.308 8 C 0.192 3.808 9 O -0.202 6.202 10 C 0.132 3.868 11 H 0.078 0.922 12 C -0.574 4.574 13 H 0.071 0.929 14 C -0.156 4.156 15 N -0.547 5.547 16 Si 0.740 3.260 17 H -0.195 1.195 18 H -0.191 1.191 19 H -0.163 1.163 20 C -0.095 4.095 21 Cl -0.175 7.175 22 N -0.297 5.297 23 H 0.107 0.893 24 H 0.153 0.847 25 H 0.111 0.889 26 H 0.295 0.705 27 H 0.188 0.812 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.381 -5.892 6.075 18.438 hybrid contribution -0.290 1.543 0.132 1.576 sum -16.671 -4.348 6.206 18.313 Atomic orbital electron populations 1.23627 0.91067 1.07995 1.07175 1.85995 1.09975 0.92029 1.90031 1.24669 0.84986 1.01022 0.92868 1.68311 1.34800 1.04147 1.23547 1.18904 0.85752 0.85884 0.88073 1.84671 1.46343 1.60624 1.36313 1.21946 0.90583 1.02999 1.15301 1.20310 0.86957 0.88126 0.85431 1.86421 1.11115 1.38017 1.84682 1.20628 0.84301 0.88915 0.92981 0.92162 1.20758 1.07025 0.97583 1.32040 0.92898 1.25611 0.94148 1.02717 0.93147 1.69933 1.13271 1.38540 1.32932 0.86151 0.78955 0.79915 0.80959 1.19504 1.19131 1.16333 1.25448 0.89141 0.99816 0.95109 1.98670 1.51127 1.84194 1.83479 1.68312 1.22844 1.15936 1.22635 0.89306 0.84715 0.88894 0.70549 0.81170 0.91090 0.87925 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.61 113.37 1.09 -1.20 16 2 S -0.01 -0.36 22.89 -56.49 -1.29 -1.65 16 3 C 0.34 11.60 7.85 180.45 1.42 13.01 16 4 N -0.57 -17.47 9.15 -309.45 -2.83 -20.31 16 5 C 0.40 11.42 7.82 84.73 0.66 12.08 16 6 O -0.47 -9.67 13.57 -88.41 -1.20 -10.87 16 7 C -0.28 -9.03 10.07 22.66 0.23 -8.81 16 8 C 0.38 15.08 6.68 84.72 0.57 15.65 16 9 O -0.30 -13.49 9.75 -88.35 -0.86 -14.35 16 10 C 0.19 8.81 1.91 29.85 0.06 8.86 16 11 H 0.06 2.94 4.17 -2.39 -0.01 2.93 16 12 C -0.54 -29.40 9.23 25.60 0.24 -29.16 16 13 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 14 C 0.05 2.59 5.47 84.65 0.46 3.05 16 15 N -0.91 -52.69 13.96 21.45 0.30 -52.39 16 16 Si 0.92 41.91 26.99 68.60 1.85 43.76 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.24 -10.43 6.82 99.48 0.68 -9.75 16 20 C -0.03 -1.31 6.31 71.98 0.45 -0.85 16 21 Cl -0.20 -7.56 25.95 -2.72 -0.07 -7.63 16 22 N -0.56 -22.26 6.50 -309.45 -2.01 -24.27 16 23 H 0.09 1.64 8.11 -2.39 -0.02 1.62 16 24 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.09 1.61 8.11 -2.39 -0.02 1.59 16 26 H 0.43 3.91 9.06 -74.06 -0.67 3.24 16 27 H 0.17 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.10 4.09 8.14 -2.38 -0.02 4.07 16 30 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 Total: -1.00 -66.12 293.06 -0.44 -66.56 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.50 Total: 8.51 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.17 Total: 12.63 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -4.54 Total: -96.96 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -2.06 Total: -25.22 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.85 Total: 43.76 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.29 Total: -1.65 kcal Atomic # 17 Polarization: -7.56 SS G_CDS: -0.07 Total: -7.63 kcal Total: -66.12 -0.44 -66.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228090943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.701 kcal (2) G-P(sol) polarization free energy of solvation -66.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds