Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99703 * 2 1 4 4 H 1.48509 * 109.46754 * 90.00480 * 3 2 1 5 5 H 1.48501 * 109.47340 * 210.00179 * 3 2 1 6 6 H 1.48498 * 109.47315 * 330.00488 * 3 2 1 7 7 C 1.37875 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99741 * 182.40868 * 7 2 1 9 9 C 1.50689 * 120.00178 * 2.40633 * 7 2 1 10 10 H 1.09004 * 109.47374 * 30.97468 * 9 7 2 11 11 O 1.42905 * 109.47217 * 150.96947 * 9 7 2 12 12 C 1.35776 * 117.00289 * 275.44322 * 11 9 7 13 13 C 1.39160 * 121.08094 * 5.05780 * 12 11 9 14 14 N 1.31842 * 119.76105 * 179.76053 * 13 12 11 15 15 N 1.28307 * 122.27657 * 0.53854 * 14 13 12 16 16 C 1.32002 * 122.34997 * 359.72685 * 15 14 13 17 17 C 1.38504 * 119.89148 * 359.97438 * 16 15 14 18 18 Cl 1.73599 * 121.05672 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47266 * 270.97048 * 9 7 2 20 20 C 1.38239 * 120.00247 * 277.71427 * 19 9 7 21 21 C 1.38231 * 120.00008 * 179.80655 * 20 19 9 22 22 C 1.38237 * 120.00319 * 0.40372 * 21 20 19 23 23 C 1.38241 * 119.99716 * 359.85177 * 22 21 20 24 24 C 1.38234 * 119.99888 * 97.98900 * 19 9 7 25 25 H 0.96999 * 119.99764 * 174.27232 * 1 2 3 26 26 H 1.07998 * 120.12135 * 0.02562 * 13 12 11 27 27 H 1.07993 * 120.05368 * 179.97438 * 16 15 14 28 28 H 1.07998 * 119.99492 * 359.97438 * 20 19 9 29 29 H 1.07998 * 120.00149 * 180.23284 * 21 20 19 30 30 H 1.07994 * 120.00459 * 179.83303 * 22 21 20 31 31 H 1.07992 * 119.99821 * 179.97438 * 23 22 21 32 32 H 1.08000 * 120.00077 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4002 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0838 -1.1944 0.0388 9 6 1.2521 -2.4985 -0.0559 10 1 0.3271 -2.3609 -0.6160 11 8 2.0578 -3.4861 -0.7022 12 6 2.0214 -3.5199 -2.0590 13 6 1.3148 -2.5641 -2.7828 14 7 1.3009 -2.6190 -4.1000 15 7 1.9133 -3.5375 -4.7540 16 6 2.6048 -4.4893 -4.1555 17 6 2.6869 -4.5177 -2.7732 18 17 3.5875 -5.7558 -1.9548 19 6 0.9288 -2.9517 1.3444 20 6 1.8795 -3.6230 2.0905 21 6 1.5842 -4.0352 3.3765 22 6 0.3355 -3.7836 3.9134 23 6 -0.6170 -3.1171 3.1654 24 6 -0.3204 -2.7013 1.8808 25 1 -0.4850 -0.8359 -0.0838 26 1 0.7833 -1.7778 -2.2675 27 1 3.1057 -5.2447 -4.7427 28 1 2.8538 -3.8229 1.6697 29 1 2.3281 -4.5563 3.9608 30 1 0.1038 -4.1081 4.9171 31 1 -1.5927 -2.9209 3.5847 32 1 -1.0645 -2.1805 1.2965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228942852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = 34.479478 kcal Electronic energy + Delta-G solvation = -20296.972843 eV Core-core repulsion = 17056.240568 eV Total energy + Delta-G solvation = -3240.732275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87717 -39.05820 -37.75357 -36.55582 -33.89684 -32.14800 -31.67321 -30.51884 -30.29424 -26.97051 -24.43146 -24.04977 -23.18291 -21.93643 -20.77493 -18.29942 -17.87740 -17.21842 -16.46161 -16.02796 -15.32839 -14.86718 -14.57798 -14.16028 -13.97367 -13.90951 -13.78610 -13.27533 -12.84404 -12.46884 -12.29538 -12.07770 -11.81657 -11.44115 -11.10197 -10.96144 -10.58611 -10.51250 -10.33131 -10.05041 -9.65863 -9.59450 -9.42388 -8.89848 -8.44310 -8.35518 -7.97417 -6.84172 -4.66010 0.94495 1.23046 1.93725 1.97633 2.09854 3.23592 3.28294 3.41400 3.46096 3.77450 4.18515 4.35270 4.41254 4.59150 4.86425 4.89652 5.29120 5.41265 5.42132 5.55083 5.63935 5.80763 5.90135 5.98076 6.14250 6.18760 6.41417 6.53631 6.60698 7.00880 7.01732 7.17640 7.33491 7.53728 7.57825 8.05138 8.30058 8.96253 9.03938 10.49128 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.007530 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.089962 B = 3717.466677 C = 5254.991770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.037 3.963 3 Si 1.071 2.929 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.616 4.616 8 H 0.069 0.931 9 C 0.220 3.780 10 H 0.050 0.950 11 O -0.288 6.288 12 C 0.178 3.822 13 C -0.003 4.003 14 N -0.213 5.213 15 N -0.276 5.276 16 C 0.080 3.920 17 C -0.110 4.110 18 Cl -0.039 7.039 19 C -0.041 4.041 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.142 4.142 23 C -0.122 4.122 24 C -0.112 4.112 25 H 0.270 0.730 26 H 0.192 0.808 27 H 0.176 0.824 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -8.253 0.657 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.171 4.171 3 Si 0.897 3.103 4 H -0.209 1.209 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.652 4.652 8 H 0.087 0.913 9 C 0.166 3.834 10 H 0.067 0.933 11 O -0.196 6.196 12 C 0.116 3.884 13 C -0.171 4.171 14 N -0.055 5.055 15 N -0.122 5.122 16 C -0.083 4.083 17 C -0.149 4.149 18 Cl -0.011 7.011 19 C -0.042 4.042 20 C -0.121 4.121 21 C -0.146 4.146 22 C -0.160 4.160 23 C -0.140 4.140 24 C -0.130 4.130 25 H 0.083 0.917 26 H 0.209 0.791 27 H 0.193 0.807 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.943 -6.180 -0.395 6.490 hybrid contribution 0.771 -2.147 1.622 2.799 sum 2.715 -8.327 1.227 8.844 Atomic orbital electron populations 1.70894 1.06721 1.31244 1.42821 1.25979 0.96225 1.02864 0.92022 0.83484 0.74947 0.74442 0.77395 1.20872 1.20947 1.20289 1.22215 0.95621 0.89857 1.57532 0.91270 1.19503 0.91120 0.85825 0.86945 0.93262 1.86091 1.64453 1.56309 1.12705 1.19901 0.90829 0.91201 0.86435 1.24961 1.00339 0.99777 0.92003 1.72717 1.11493 1.14455 1.06788 1.72999 1.07659 1.00523 1.31025 1.24093 0.96161 0.98246 0.89818 1.21471 1.04549 0.95522 0.93330 1.98359 1.72745 1.50914 1.79070 1.20017 0.92836 0.94474 0.96856 1.20880 0.99286 0.98135 0.93818 1.21016 0.96689 1.01193 0.95654 1.20933 0.94234 1.01383 0.99427 1.20965 0.99076 0.99384 0.94570 1.20918 0.96203 0.99883 0.96020 0.91728 0.79125 0.80698 0.86369 0.86957 0.87057 0.86773 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.67 13.63 55.43 0.76 -21.91 16 2 C 0.04 0.92 5.46 -17.82 -0.10 0.82 16 3 Si 1.07 22.98 29.90 -169.99 -5.08 17.90 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.62 -15.07 7.79 -34.45 -0.27 -15.34 16 8 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.22 4.87 1.66 -29.04 -0.05 4.82 16 10 H 0.05 1.12 4.70 -51.93 -0.24 0.88 16 11 O -0.29 -6.04 8.65 -19.04 -0.16 -6.21 16 12 C 0.18 3.48 6.64 -38.73 -0.26 3.22 16 13 C 0.00 -0.06 10.02 -17.21 -0.17 -0.23 16 14 N -0.21 -4.23 11.49 30.65 0.35 -3.88 16 15 N -0.28 -4.98 11.50 30.54 0.35 -4.63 16 16 C 0.08 1.24 11.14 -17.38 -0.19 1.04 16 17 C -0.11 -1.86 6.40 -38.98 -0.25 -2.11 16 18 Cl -0.04 -0.59 28.71 -51.86 -1.49 -2.08 16 19 C -0.04 -0.87 4.97 -104.62 -0.52 -1.39 16 20 C -0.10 -2.01 9.36 -39.58 -0.37 -2.38 16 21 C -0.13 -2.15 10.05 -39.58 -0.40 -2.54 16 22 C -0.14 -2.28 10.05 -39.58 -0.40 -2.67 16 23 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 24 C -0.11 -2.23 9.44 -39.58 -0.37 -2.60 16 25 H 0.27 6.73 5.01 -40.82 -0.20 6.52 16 26 H 0.19 4.11 5.86 -52.49 -0.31 3.80 16 27 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.12 2.29 7.71 -52.49 -0.40 1.88 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.12 2.41 6.73 -52.49 -0.35 2.06 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -26.39 298.26 -6.94 -33.33 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -2.41 Total: 4.86 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -3.74 Total: -21.87 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 1.46 Total: -30.42 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.16 Total: -6.21 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.08 Total: 17.90 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.49 Total: -2.08 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.39 -6.94 -33.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228942852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.809 kcal (2) G-P(sol) polarization free energy of solvation -26.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds