Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99703 * 2 1 4 4 H 1.48509 * 109.46754 * 90.00480 * 3 2 1 5 5 H 1.48501 * 109.47340 * 210.00179 * 3 2 1 6 6 H 1.48498 * 109.47315 * 330.00488 * 3 2 1 7 7 C 1.37875 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99741 * 182.40868 * 7 2 1 9 9 C 1.50689 * 120.00178 * 2.40633 * 7 2 1 10 10 H 1.09004 * 109.47374 * 30.97468 * 9 7 2 11 11 O 1.42905 * 109.47217 * 150.96947 * 9 7 2 12 12 C 1.35776 * 117.00289 * 275.44322 * 11 9 7 13 13 C 1.39160 * 121.08094 * 5.05780 * 12 11 9 14 14 N 1.31842 * 119.76105 * 179.76053 * 13 12 11 15 15 N 1.28307 * 122.27657 * 0.53854 * 14 13 12 16 16 C 1.32002 * 122.34997 * 359.72685 * 15 14 13 17 17 C 1.38504 * 119.89148 * 359.97438 * 16 15 14 18 18 Cl 1.73599 * 121.05672 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47266 * 270.97048 * 9 7 2 20 20 C 1.38239 * 120.00247 * 277.71427 * 19 9 7 21 21 C 1.38231 * 120.00008 * 179.80655 * 20 19 9 22 22 C 1.38237 * 120.00319 * 0.40372 * 21 20 19 23 23 C 1.38241 * 119.99716 * 359.85177 * 22 21 20 24 24 C 1.38234 * 119.99888 * 97.98900 * 19 9 7 25 25 H 0.96999 * 119.99764 * 174.27232 * 1 2 3 26 26 H 1.07998 * 120.12135 * 0.02562 * 13 12 11 27 27 H 1.07993 * 120.05368 * 179.97438 * 16 15 14 28 28 H 1.07998 * 119.99492 * 359.97438 * 20 19 9 29 29 H 1.07998 * 120.00149 * 180.23284 * 21 20 19 30 30 H 1.07994 * 120.00459 * 179.83303 * 22 21 20 31 31 H 1.07992 * 119.99821 * 179.97438 * 23 22 21 32 32 H 1.08000 * 120.00077 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4002 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0838 -1.1944 0.0388 9 6 1.2521 -2.4985 -0.0559 10 1 0.3271 -2.3609 -0.6160 11 8 2.0578 -3.4861 -0.7022 12 6 2.0214 -3.5199 -2.0590 13 6 1.3148 -2.5641 -2.7828 14 7 1.3009 -2.6190 -4.1000 15 7 1.9133 -3.5375 -4.7540 16 6 2.6048 -4.4893 -4.1555 17 6 2.6869 -4.5177 -2.7732 18 17 3.5875 -5.7558 -1.9548 19 6 0.9288 -2.9517 1.3444 20 6 1.8795 -3.6230 2.0905 21 6 1.5842 -4.0352 3.3765 22 6 0.3355 -3.7836 3.9134 23 6 -0.6170 -3.1171 3.1654 24 6 -0.3204 -2.7013 1.8808 25 1 -0.4850 -0.8359 -0.0838 26 1 0.7833 -1.7778 -2.2675 27 1 3.1057 -5.2447 -4.7427 28 1 2.8538 -3.8229 1.6697 29 1 2.3281 -4.5563 3.9608 30 1 0.1038 -4.1081 4.9171 31 1 -1.5927 -2.9209 3.5847 32 1 -1.0645 -2.1805 1.2965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228942852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = 20.927706 kcal Electronic energy + Delta-G solvation = -20297.560492 eV Core-core repulsion = 17056.240568 eV Total energy + Delta-G solvation = -3241.319924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.36812 -40.56508 -39.23389 -37.87923 -35.65605 -33.59732 -33.21759 -32.01991 -31.70382 -28.64564 -26.07532 -25.55291 -24.74055 -23.35524 -22.26900 -19.95911 -19.38403 -18.85012 -17.88479 -17.45901 -16.91331 -16.29505 -16.03662 -15.79610 -15.57499 -15.37225 -15.29908 -14.77940 -14.28768 -14.09473 -13.79300 -13.47600 -13.32084 -12.93135 -12.70548 -12.55230 -12.05773 -12.00157 -11.89470 -11.56766 -11.21482 -11.07216 -11.01027 -10.74865 -9.95556 -9.76975 -9.51867 -8.76910 -6.59523 -0.51788 -0.22274 0.51380 0.55512 0.73514 1.48725 1.54896 1.72657 1.91663 2.30642 2.43353 2.88891 2.98137 3.06257 3.08870 3.45948 3.85886 3.96959 4.11841 4.19034 4.26829 4.32166 4.35313 4.54952 4.74379 4.75815 4.92383 5.11590 5.19842 5.48533 5.59978 5.63038 5.71882 5.81973 6.17091 6.21799 6.36978 7.16078 7.49248 8.56406 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.007530 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.089962 B = 3717.466677 C = 5254.991770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 1.105 2.895 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.620 4.620 8 H 0.051 0.949 9 C 0.228 3.772 10 H 0.033 0.967 11 O -0.294 6.294 12 C 0.153 3.847 13 C -0.012 4.012 14 N -0.229 5.229 15 N -0.283 5.283 16 C 0.097 3.903 17 C -0.101 4.101 18 Cl -0.015 7.015 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.133 4.133 25 H 0.266 0.734 26 H 0.169 0.831 27 H 0.225 0.775 28 H 0.111 0.889 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 -9.941 1.739 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.202 4.202 3 Si 0.927 3.073 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.657 4.657 8 H 0.069 0.931 9 C 0.174 3.826 10 H 0.051 0.949 11 O -0.202 6.202 12 C 0.092 3.908 13 C -0.180 4.180 14 N -0.071 5.071 15 N -0.129 5.129 16 C -0.066 4.066 17 C -0.140 4.140 18 Cl 0.014 6.986 19 C -0.071 4.071 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.140 4.140 24 C -0.152 4.152 25 H 0.078 0.922 26 H 0.186 0.814 27 H 0.242 0.758 28 H 0.129 0.871 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.906 -7.882 0.681 8.428 hybrid contribution 0.522 -1.816 1.265 2.274 sum 3.427 -9.698 1.946 10.469 Atomic orbital electron populations 1.70937 1.07251 1.31102 1.44711 1.26920 0.96404 1.05256 0.91631 0.83059 0.74375 0.72041 0.77844 1.19919 1.20211 1.20248 1.22272 0.94758 0.91324 1.57341 0.93057 1.19269 0.90123 0.85413 0.87761 0.94925 1.86047 1.64641 1.55983 1.13493 1.20134 0.92168 0.92434 0.86021 1.24629 1.01137 0.99940 0.92314 1.72691 1.12353 1.15571 1.06450 1.72943 1.07958 1.00862 1.31119 1.24758 0.94519 0.97853 0.89445 1.21650 1.03470 0.95001 0.93874 1.98370 1.71889 1.49493 1.78835 1.20042 0.94144 0.96548 0.96366 1.20963 0.98725 0.98919 0.95234 1.21411 0.97905 1.00145 0.94545 1.21418 0.93193 0.99428 1.00836 1.21329 1.00763 0.98547 0.93376 1.20976 0.95730 1.00963 0.97525 0.92236 0.81400 0.75848 0.87062 0.83544 0.82855 0.84033 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.51 13.63 21.45 0.29 -48.22 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 1.10 47.31 29.90 68.60 2.05 49.36 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.62 -31.71 7.79 25.60 0.20 -31.51 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 9 C 0.23 10.65 1.66 29.10 0.05 10.70 16 10 H 0.03 1.62 4.70 -2.38 -0.01 1.61 16 11 O -0.29 -12.73 8.65 -91.04 -0.79 -13.51 16 12 C 0.15 6.11 6.64 22.82 0.15 6.26 16 13 C -0.01 -0.53 10.02 84.91 0.85 0.32 16 14 N -0.23 -9.26 11.49 -56.95 -0.65 -9.92 16 15 N -0.28 -9.93 11.50 -57.29 -0.66 -10.58 16 16 C 0.10 2.77 11.14 84.73 0.94 3.72 16 17 C -0.10 -3.30 6.40 22.66 0.14 -3.15 16 18 Cl -0.01 -0.41 28.71 -2.72 -0.08 -0.48 16 19 C -0.07 -3.06 4.97 -19.87 -0.10 -3.16 16 20 C -0.12 -4.66 9.36 22.27 0.21 -4.45 16 21 C -0.12 -3.79 10.05 22.27 0.22 -3.56 16 22 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 23 C -0.12 -4.00 10.05 22.27 0.22 -3.77 16 24 C -0.13 -5.43 9.44 22.27 0.21 -5.22 16 25 H 0.27 14.08 5.01 -92.71 -0.46 13.61 16 26 H 0.17 7.86 5.86 -2.91 -0.02 7.84 16 27 H 0.23 4.06 8.06 -2.91 -0.02 4.04 16 28 H 0.11 4.34 7.71 -2.91 -0.02 4.32 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.10 4.44 6.73 -2.91 -0.02 4.42 16 Total: -1.00 -59.02 298.26 5.43 -53.59 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.47 Total: 16.60 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.79 Total: -36.83 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.02 Total: -68.73 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.79 Total: -13.51 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.05 Total: 49.36 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.48 kcal Total: -59.02 5.43 -53.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228942852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.518 kcal (2) G-P(sol) polarization free energy of solvation -59.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds