Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46923 * 2 1 4 4 C 1.38649 * 121.03188 * 265.27686 * 3 2 1 5 5 C 1.38859 * 118.00905 * 180.25980 * 4 3 2 6 6 Cl 1.73599 * 120.03115 * 179.73957 * 5 4 3 7 7 N 1.31929 * 119.94137 * 359.46036 * 5 4 3 8 8 N 1.28352 * 122.24348 * 0.27810 * 7 5 4 9 9 C 1.32324 * 122.11557 * 0.02562 * 8 7 5 10 10 O 1.35715 * 120.12308 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00162 * 0.02562 * 10 9 8 12 12 H 1.09006 * 109.47040 * 29.99821 * 11 10 9 13 13 C 1.50700 * 109.47406 * 149.99744 * 11 10 9 14 14 H 1.07994 * 119.99674 * 0.02562 * 13 11 10 15 15 C 1.37872 * 119.99765 * 180.02562 * 13 11 10 16 16 N 1.31512 * 120.00471 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99976 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47098 * 89.99817 * 17 15 13 19 19 H 1.48501 * 109.47377 * 210.00102 * 17 15 13 20 20 H 1.48507 * 109.47104 * 329.99886 * 17 15 13 21 21 C 1.53001 * 109.47154 * 270.00462 * 11 10 9 22 22 Cl 1.80299 * 109.47397 * 64.99310 * 21 11 10 23 23 H 1.09005 * 109.47487 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47412 * 300.00291 * 1 2 3 25 25 H 1.09006 * 109.47239 * 60.00318 * 1 2 3 26 26 H 1.08999 * 109.46691 * 239.99656 * 2 1 3 27 27 H 1.09000 * 109.46706 * 120.00080 * 2 1 3 28 28 H 1.08000 * 120.99701 * 359.97438 * 4 3 2 29 29 H 0.97004 * 120.00231 * 180.02562 * 16 15 13 30 30 H 1.08996 * 109.47289 * 184.99905 * 21 11 10 31 31 H 1.09002 * 109.46684 * 304.99426 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3628 2.0621 -1.1840 5 6 2.8245 3.3696 -1.1106 6 17 3.2597 4.2200 -2.5601 7 7 2.9269 3.9669 0.0613 8 7 2.6170 3.3787 1.1591 9 6 2.1740 2.1321 1.1886 10 8 1.8585 1.5493 2.3729 11 6 2.0281 2.3402 3.5509 12 1 1.8746 3.3917 3.3077 13 6 1.0249 1.9136 4.5913 14 1 0.3278 1.1177 4.3748 15 6 0.9971 2.5393 5.8195 16 7 1.8457 3.5088 6.0830 17 14 -0.2460 2.0100 7.1095 18 1 0.3393 0.9339 7.9488 19 1 -0.5953 3.1715 7.9664 20 1 -1.4705 1.5039 6.4387 21 6 3.4439 2.1446 4.0970 22 17 4.6397 2.7905 2.9123 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2684 1.5582 -2.1346 29 1 1.8263 3.9488 6.9473 30 1 3.5454 2.6770 5.0427 31 1 3.6281 1.0822 4.2566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230537001.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -9.488212 kcal Electronic energy + Delta-G solvation = -18982.346199 eV Core-core repulsion = 15737.274492 eV Total energy + Delta-G solvation = -3245.071707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91774 -37.99295 -36.57327 -35.25298 -34.70768 -33.48228 -31.43530 -30.35574 -29.20220 -25.37275 -25.04162 -24.05090 -21.79246 -21.20858 -17.95264 -17.66009 -16.52317 -16.36651 -15.58673 -14.96854 -14.23744 -14.01489 -13.88262 -13.63434 -13.57265 -12.95140 -12.55457 -12.07832 -12.03746 -11.65029 -11.52581 -11.39340 -11.33534 -11.20302 -11.07560 -10.86993 -10.70588 -10.41092 -9.87715 -9.67998 -9.41425 -9.31618 -9.10079 -8.69892 -8.14117 -6.44118 -4.54041 0.96535 1.23636 1.85214 3.11210 3.18481 3.21945 3.44846 3.62640 3.79123 4.17311 4.48410 4.59686 4.86999 4.91524 4.94872 5.22090 5.40052 5.51186 5.62962 5.83613 5.96876 6.13551 6.21083 6.25402 6.29704 6.37670 6.83202 7.16519 7.45117 7.70940 8.00432 8.56193 8.98523 9.13357 10.62681 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.005502 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.850465 B = 5087.389656 C = 5794.741457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.098 4.098 4 C -0.086 4.086 5 C 0.064 3.936 6 Cl -0.029 7.029 7 N -0.195 5.195 8 N -0.246 5.246 9 C 0.289 3.711 10 O -0.286 6.286 11 C 0.208 3.792 12 H 0.068 0.932 13 C -0.527 4.527 14 H 0.076 0.924 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.917 3.083 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.270 1.270 21 C -0.035 4.035 22 Cl -0.231 7.231 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.273 0.727 30 H 0.135 0.865 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -5.292 -11.842 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.111 4.111 4 C -0.115 4.115 5 C -0.109 4.109 6 Cl -0.002 7.002 7 N -0.042 5.042 8 N -0.104 5.104 9 C 0.104 3.896 10 O -0.189 6.189 11 C 0.154 3.846 12 H 0.086 0.914 13 C -0.565 4.565 14 H 0.094 0.906 15 C -0.138 4.138 16 N -0.519 5.519 17 Si 0.743 3.257 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.098 4.098 22 Cl -0.206 7.206 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.172 0.828 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.463 -3.992 -10.889 11.607 hybrid contribution -0.613 -1.115 -0.158 1.282 sum -0.151 -5.107 -11.046 12.171 Atomic orbital electron populations 1.21729 0.94016 1.02078 1.02567 1.20385 0.96710 0.90177 1.03658 1.20375 1.01627 0.98822 0.90229 1.21791 0.97394 0.92990 0.99277 1.23157 1.04723 0.92194 0.90838 1.98368 1.91690 1.78279 1.31838 1.72721 1.09312 1.28655 0.93508 1.73548 1.12747 1.07847 1.16299 1.21567 0.89244 0.90153 0.88648 1.86335 1.77942 1.42158 1.12477 1.20670 0.91704 0.93595 0.78647 0.91407 1.20943 1.16890 1.21258 0.97427 0.90604 1.24961 0.96350 0.94220 0.98252 1.69822 1.35706 1.22437 1.23890 0.86179 0.80833 0.78318 0.80383 1.20134 1.20688 1.19423 1.25626 0.88520 1.00064 0.95550 1.98654 1.65646 1.89738 1.66518 0.91990 0.91530 0.92930 0.90676 0.89339 0.82809 0.91698 0.84760 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 37.16 0.37 -1.37 16 2 C -0.07 -0.90 5.86 -27.88 -0.16 -1.06 16 3 C -0.10 -1.54 5.19 -104.10 -0.54 -2.08 16 4 C -0.09 -1.20 9.70 -39.20 -0.38 -1.58 16 5 C 0.06 1.03 7.36 -17.28 -0.13 0.90 16 6 Cl -0.03 -0.39 29.13 -51.86 -1.51 -1.90 16 7 N -0.20 -3.87 11.48 32.89 0.38 -3.49 16 8 N -0.25 -5.30 7.57 30.50 0.23 -5.07 16 9 C 0.29 5.78 6.70 -16.97 -0.11 5.66 16 10 O -0.29 -6.26 9.00 -18.85 -0.17 -6.43 16 11 C 0.21 5.07 2.26 -27.88 -0.06 5.01 16 12 H 0.07 1.84 7.00 -51.93 -0.36 1.47 16 13 C -0.53 -13.44 8.89 -34.44 -0.31 -13.74 16 14 H 0.08 1.90 7.81 -52.49 -0.41 1.49 16 15 C 0.07 1.67 5.29 -17.82 -0.09 1.58 16 16 N -0.88 -23.12 11.30 55.43 0.63 -22.49 16 17 Si 0.92 19.59 29.54 -169.99 -5.02 14.57 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.03 -0.80 6.17 37.16 0.23 -0.57 16 22 Cl -0.23 -5.08 25.92 -51.86 -1.34 -6.43 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.09 1.21 7.78 -51.93 -0.40 0.80 16 28 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.13 3.35 5.96 -51.93 -0.31 3.04 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 298.14 15.07 4.49 4.49 Total: -1.00 -27.03 298.14 -6.66 -33.70 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -3.15 Total: 0.32 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.19 Total: -7.26 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 1.23 Total: -31.05 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.17 Total: -6.43 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 17 Polarization: -5.48 SS G_CDS: -2.85 Total: -8.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.03 -6.66 -33.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230537001.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.208 kcal (2) G-P(sol) polarization free energy of solvation -27.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds