Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46923 * 2 1 4 4 C 1.38649 * 121.03188 * 265.27686 * 3 2 1 5 5 C 1.38859 * 118.00905 * 180.25980 * 4 3 2 6 6 Cl 1.73599 * 120.03115 * 179.73957 * 5 4 3 7 7 N 1.31929 * 119.94137 * 359.46036 * 5 4 3 8 8 N 1.28352 * 122.24348 * 0.27810 * 7 5 4 9 9 C 1.32324 * 122.11557 * 0.02562 * 8 7 5 10 10 O 1.35715 * 120.12308 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00162 * 0.02562 * 10 9 8 12 12 H 1.09006 * 109.47040 * 29.99821 * 11 10 9 13 13 C 1.50700 * 109.47406 * 149.99744 * 11 10 9 14 14 H 1.07994 * 119.99674 * 0.02562 * 13 11 10 15 15 C 1.37872 * 119.99765 * 180.02562 * 13 11 10 16 16 N 1.31512 * 120.00471 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99976 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47098 * 89.99817 * 17 15 13 19 19 H 1.48501 * 109.47377 * 210.00102 * 17 15 13 20 20 H 1.48507 * 109.47104 * 329.99886 * 17 15 13 21 21 C 1.53001 * 109.47154 * 270.00462 * 11 10 9 22 22 Cl 1.80299 * 109.47397 * 64.99310 * 21 11 10 23 23 H 1.09005 * 109.47487 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47412 * 300.00291 * 1 2 3 25 25 H 1.09006 * 109.47239 * 60.00318 * 1 2 3 26 26 H 1.08999 * 109.46691 * 239.99656 * 2 1 3 27 27 H 1.09000 * 109.46706 * 120.00080 * 2 1 3 28 28 H 1.08000 * 120.99701 * 359.97438 * 4 3 2 29 29 H 0.97004 * 120.00231 * 180.02562 * 16 15 13 30 30 H 1.08996 * 109.47289 * 184.99905 * 21 11 10 31 31 H 1.09002 * 109.46684 * 304.99426 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3628 2.0621 -1.1840 5 6 2.8245 3.3696 -1.1106 6 17 3.2597 4.2200 -2.5601 7 7 2.9269 3.9669 0.0613 8 7 2.6170 3.3787 1.1591 9 6 2.1740 2.1321 1.1886 10 8 1.8585 1.5493 2.3729 11 6 2.0281 2.3402 3.5509 12 1 1.8746 3.3917 3.3077 13 6 1.0249 1.9136 4.5913 14 1 0.3278 1.1177 4.3748 15 6 0.9971 2.5393 5.8195 16 7 1.8457 3.5088 6.0830 17 14 -0.2460 2.0100 7.1095 18 1 0.3393 0.9339 7.9488 19 1 -0.5953 3.1715 7.9664 20 1 -1.4705 1.5039 6.4387 21 6 3.4439 2.1446 4.0970 22 17 4.6397 2.7905 2.9123 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2684 1.5582 -2.1346 29 1 1.8263 3.9488 6.9473 30 1 3.5454 2.6770 5.0427 31 1 3.6281 1.0822 4.2566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230537001.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -25.634987 kcal Electronic energy + Delta-G solvation = -18983.046376 eV Core-core repulsion = 15737.274492 eV Total energy + Delta-G solvation = -3245.771884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.30397 -39.58384 -37.78407 -36.70764 -36.25548 -35.33766 -32.76582 -31.74505 -30.88254 -27.30404 -26.27162 -25.44734 -23.17226 -22.69171 -19.49151 -19.25876 -18.26516 -17.58788 -17.10704 -16.77430 -15.56707 -15.43057 -15.27697 -15.02896 -14.84800 -14.47438 -13.90518 -13.78134 -13.54367 -13.11567 -13.03655 -12.77945 -12.70518 -12.51447 -12.48549 -12.47803 -12.15065 -11.78986 -11.61902 -11.21122 -11.09035 -10.85924 -10.71722 -10.41775 -9.69189 -8.36471 -6.54498 -0.29334 -0.10440 0.60929 1.41582 1.43383 1.55297 1.62812 2.07967 2.40587 2.43734 2.97811 3.15420 3.35872 3.66033 3.81467 4.08754 4.32101 4.37356 4.42083 4.44320 4.54160 4.78495 4.91052 5.05292 5.07831 5.24308 5.26905 5.40828 5.51170 5.79772 6.27270 6.62500 7.17154 7.59528 8.70463 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.005502 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.850465 B = 5087.389656 C = 5794.741457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.091 4.091 4 C -0.069 4.069 5 C 0.068 3.932 6 Cl -0.001 7.001 7 N -0.236 5.236 8 N -0.286 5.286 9 C 0.260 3.740 10 O -0.294 6.294 11 C 0.219 3.781 12 H 0.031 0.969 13 C -0.548 4.548 14 H 0.074 0.926 15 C 0.025 3.975 16 N -0.910 5.910 17 Si 0.981 3.019 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.025 4.025 22 Cl -0.221 7.221 23 H 0.084 0.916 24 H 0.031 0.969 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.206 0.794 29 H 0.275 0.725 30 H 0.115 0.885 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -6.933 -13.790 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.103 4.103 4 C -0.097 4.097 5 C -0.107 4.107 6 Cl 0.027 6.973 7 N -0.081 5.081 8 N -0.143 5.143 9 C 0.074 3.926 10 O -0.198 6.198 11 C 0.163 3.837 12 H 0.049 0.951 13 C -0.585 4.585 14 H 0.092 0.908 15 C -0.176 4.176 16 N -0.547 5.547 17 Si 0.804 3.196 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.088 4.088 22 Cl -0.195 7.195 23 H 0.103 0.897 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.092 0.908 28 H 0.223 0.777 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.034 -5.615 -12.859 14.032 hybrid contribution -0.405 -0.551 0.204 0.714 sum -0.439 -6.166 -12.655 14.084 Atomic orbital electron populations 1.21714 0.93455 1.03302 1.01587 1.20529 0.97029 0.88129 1.05056 1.20816 1.00279 1.00126 0.89092 1.22300 0.94981 0.91847 1.00545 1.23563 1.03029 0.93247 0.90819 1.98381 1.91349 1.77989 1.29603 1.72599 1.11347 1.29746 0.94441 1.73401 1.14133 1.08962 1.17786 1.21925 0.90893 0.90764 0.89054 1.86276 1.79101 1.41781 1.12667 1.20246 0.92023 0.91861 0.79559 0.95112 1.21202 1.17519 1.21509 0.98267 0.90831 1.25783 0.97914 0.93966 0.99968 1.69936 1.37005 1.23289 1.24433 0.85197 0.78571 0.78067 0.77767 1.19081 1.20493 1.18998 1.25341 0.88524 1.00106 0.94801 1.98646 1.65084 1.89694 1.66083 0.89693 0.95015 0.91377 0.86394 0.90778 0.77691 0.91525 0.86703 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.07 -1.56 5.86 29.85 0.18 -1.38 16 3 C -0.09 -2.70 5.19 -19.52 -0.10 -2.80 16 4 C -0.07 -1.69 9.70 22.52 0.22 -1.47 16 5 C 0.07 2.06 7.36 84.83 0.62 2.69 16 6 Cl 0.00 -0.03 29.13 -2.72 -0.08 -0.10 16 7 N -0.24 -9.41 11.48 -49.86 -0.57 -9.98 16 8 N -0.29 -12.69 7.57 -170.23 -1.29 -13.98 16 9 C 0.26 10.52 6.70 84.86 0.57 11.08 16 10 O -0.29 -13.31 9.00 -90.36 -0.81 -14.12 16 11 C 0.22 11.09 2.26 29.85 0.07 11.16 16 12 H 0.03 1.78 7.00 -2.38 -0.02 1.77 16 13 C -0.55 -28.73 8.89 25.60 0.23 -28.51 16 14 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 15 C 0.03 1.29 5.29 84.65 0.45 1.73 16 16 N -0.91 -49.02 11.30 21.45 0.24 -48.77 16 17 Si 0.98 40.35 29.54 68.60 2.03 42.37 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 C -0.02 -1.18 6.17 71.98 0.44 -0.74 16 22 Cl -0.22 -9.94 25.92 -2.72 -0.07 -10.01 16 23 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.12 1.66 8.08 -2.39 -0.02 1.64 16 27 H 0.07 1.91 7.78 -2.39 -0.02 1.89 16 28 H 0.21 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.12 5.96 5.96 -2.39 -0.01 5.95 16 31 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -61.48 298.14 3.99 -57.49 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.16 Total: 7.68 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 3.38 Total: -10.58 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.62 Total: -72.73 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.81 Total: -14.12 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 17 Polarization: -9.97 SS G_CDS: -0.15 Total: -10.12 kcal Total: -61.48 3.99 -57.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230537001.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.859 kcal (2) G-P(sol) polarization free energy of solvation -61.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds