Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.35970 * 125.43672 * 275.19027 * 3 2 1 5 5 C 1.41590 * 107.75312 * 180.02562 * 4 3 2 6 6 C 1.40156 * 133.26496 * 180.28754 * 5 4 3 7 7 C 1.36352 * 119.89830 * 180.17402 * 6 5 4 8 8 C 1.39426 * 120.55234 * 359.51150 * 7 6 5 9 9 O 1.35861 * 119.74164 * 180.23075 * 8 7 6 10 10 C 1.42900 * 116.99817 * 356.51570 * 9 8 7 11 11 H 1.09005 * 109.47346 * 27.33857 * 10 9 8 12 12 C 1.50707 * 109.46744 * 147.33397 * 10 9 8 13 13 H 1.07991 * 119.99702 * 0.02562 * 12 10 9 14 14 C 1.37876 * 119.99461 * 180.02562 * 12 10 9 15 15 N 1.31512 * 120.00430 * 0.02562 * 14 12 10 16 16 Si 1.86808 * 119.99598 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47020 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46907 * 119.99657 * 16 14 12 19 19 H 1.48491 * 109.47038 * 240.00094 * 16 14 12 20 20 C 1.53002 * 109.47358 * 267.33542 * 10 9 8 21 21 Cl 1.80301 * 109.47159 * 65.00044 * 20 10 9 22 22 C 1.38236 * 120.51224 * 0.24792 * 8 7 6 23 23 C 1.39055 * 119.77451 * 0.02562 * 22 8 7 24 24 N 1.37642 * 133.10496 * 180.02562 * 23 22 8 25 25 H 0.96999 * 125.62339 * 0.03815 * 24 23 22 26 26 H 1.08001 * 126.11948 * 0.02562 * 4 3 2 27 27 H 1.07990 * 120.04866 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.71969 * 179.73748 * 7 6 5 29 29 H 0.96999 * 119.99998 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.47223 * 185.00389 * 20 10 9 31 31 H 1.09003 * 109.46898 * 305.00236 * 20 10 9 32 32 H 1.07998 * 120.11131 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3564 -0.0992 1.1033 5 6 4.7054 -0.0591 0.6750 6 6 5.9306 -0.1250 1.3524 7 6 7.0988 -0.0551 0.6525 8 6 7.0866 0.0715 -0.7360 9 8 8.2604 0.1350 -1.4172 10 6 9.4608 0.1434 -0.6420 11 1 9.2866 -0.3710 0.3031 12 6 10.5549 -0.5605 -1.4028 13 1 10.3536 -0.9725 -2.3805 14 6 11.8126 -0.6783 -0.8504 15 7 12.0574 -0.1770 0.3405 16 14 13.1690 -1.5502 -1.7936 17 1 12.6407 -2.0197 -3.0996 18 1 14.2945 -0.6095 -2.0249 19 1 13.6501 -2.7138 -1.0065 20 6 9.8798 1.5888 -0.3663 21 17 8.6382 2.3876 0.6686 22 6 5.8896 0.1333 -1.4246 23 6 4.6880 0.0693 -0.7278 24 7 3.3695 0.1038 -1.1215 25 1 3.0546 0.1857 -2.0353 26 1 3.0148 -0.1924 2.1236 27 1 5.9495 -0.2277 2.4272 28 1 8.0413 -0.1018 1.1778 29 1 12.9424 -0.2596 0.7290 30 1 10.8410 1.5967 0.1477 31 1 9.9679 2.1278 -1.3097 32 1 5.8878 0.2310 -2.5002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233997713.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = 27.710089 kcal Electronic energy + Delta-G solvation = -19594.154500 eV Core-core repulsion = 16353.128682 eV Total energy + Delta-G solvation = -3241.025818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.41287 -40.33151 -37.83767 -36.82501 -36.32255 -35.21690 -33.05933 -31.39530 -30.46860 -29.27921 -27.22839 -24.81838 -24.13404 -22.34782 -21.76274 -20.04228 -19.06682 -18.70328 -17.12768 -16.96424 -16.41429 -16.15610 -15.93520 -15.68577 -15.04595 -14.87451 -14.58021 -14.31733 -14.19399 -14.16426 -13.85493 -13.79119 -13.35800 -13.00782 -12.96223 -12.82121 -12.60092 -12.18572 -12.01092 -11.78046 -11.30694 -11.09159 -10.88428 -10.53799 -10.36995 -8.99071 -8.39525 -8.31639 -6.47811 -0.14565 0.72408 1.16881 1.18758 1.42451 1.47522 1.59098 1.67251 2.03733 2.33350 2.42110 2.75459 2.99341 3.02996 3.09111 3.86531 4.16212 4.23211 4.36042 4.38595 4.47545 4.58106 4.63814 4.83707 4.98428 5.09293 5.26728 5.46320 5.57848 5.59509 5.68261 5.71107 5.91430 6.06073 6.25119 6.51201 6.55453 6.89442 7.24766 8.73409 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.030001 B = 0.003856 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.081101 B = 7259.896067 C = 7702.338135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.305 3.695 3 C 0.097 3.903 4 C -0.080 4.080 5 C -0.167 4.167 6 C -0.022 4.022 7 C -0.215 4.215 8 C 0.168 3.832 9 O -0.326 6.326 10 C 0.211 3.789 11 H 0.040 0.960 12 C -0.547 4.547 13 H 0.066 0.934 14 C 0.029 3.971 15 N -0.907 5.907 16 Si 0.974 3.026 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.276 1.276 20 C -0.028 4.028 21 Cl -0.217 7.217 22 C -0.204 4.204 23 C 0.159 3.841 24 N -0.565 5.565 25 H 0.432 0.568 26 H 0.182 0.818 27 H 0.151 0.849 28 H 0.124 0.876 29 H 0.275 0.725 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.521 0.761 0.915 10.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.010 4.010 3 C -0.012 4.012 4 C -0.109 4.109 5 C -0.171 4.171 6 C -0.040 4.040 7 C -0.235 4.235 8 C 0.119 3.881 9 O -0.239 6.239 10 C 0.156 3.844 11 H 0.058 0.942 12 C -0.584 4.584 13 H 0.084 0.916 14 C -0.173 4.173 15 N -0.544 5.544 16 Si 0.798 3.202 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.201 1.201 20 C -0.091 4.091 21 Cl -0.191 7.191 22 C -0.226 4.226 23 C 0.047 3.953 24 N -0.171 5.171 25 H 0.273 0.727 26 H 0.200 0.800 27 H 0.168 0.832 28 H 0.141 0.859 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.278 0.872 0.772 12.334 hybrid contribution 1.372 -0.157 -0.731 1.563 sum -10.907 0.715 0.041 10.930 Atomic orbital electron populations 1.81337 1.12087 1.11375 1.06724 1.24259 0.90616 0.92386 0.93756 1.15007 0.82368 1.15928 0.87874 1.21099 0.89410 1.01811 0.98617 1.18170 0.94098 1.12598 0.92284 1.20365 0.89086 0.94137 1.00437 1.21059 1.00063 1.08890 0.93440 1.18967 0.86145 0.92077 0.90875 1.86052 1.13325 1.86669 1.37872 1.20322 0.79887 0.91621 0.92555 0.94247 1.21271 0.94889 1.37379 1.04899 0.91625 1.25653 1.00299 0.95566 0.95769 1.69875 1.23707 1.44759 1.16075 0.85248 0.78078 0.78252 0.78616 1.19344 1.19882 1.20099 1.25405 0.93754 0.94902 0.95063 1.98638 1.62685 1.83867 1.73950 1.18914 0.87239 1.16515 0.99981 1.17615 0.83789 1.00258 0.93646 1.41560 1.02702 1.64102 1.08699 0.72733 0.80033 0.83169 0.85877 0.91512 0.86507 0.90792 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.46 18.54 19.00 0.35 -10.11 16 2 C 0.30 6.10 15.86 88.33 1.40 7.50 16 3 C 0.10 1.86 6.87 38.85 0.27 2.12 16 4 C -0.08 -1.54 10.76 22.57 0.24 -1.30 16 5 C -0.17 -4.27 6.16 -21.34 -0.13 -4.40 16 6 C -0.02 -0.60 10.05 22.30 0.22 -0.38 16 7 C -0.22 -7.54 6.92 22.12 0.15 -7.39 16 8 C 0.17 6.31 5.96 22.56 0.13 6.44 16 9 O -0.33 -14.42 9.72 -91.99 -0.89 -15.31 16 10 C 0.21 9.91 2.19 29.85 0.07 9.97 16 11 H 0.04 1.96 5.38 -2.38 -0.01 1.95 16 12 C -0.55 -27.79 8.89 25.60 0.23 -27.56 16 13 H 0.07 3.39 7.81 -2.92 -0.02 3.37 16 14 C 0.03 1.40 5.29 84.65 0.45 1.85 16 15 N -0.91 -45.59 11.30 21.45 0.24 -45.35 16 16 Si 0.97 39.29 29.54 68.60 2.03 41.32 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 20 C -0.03 -1.24 6.17 71.98 0.44 -0.80 16 21 Cl -0.22 -8.39 25.53 -2.72 -0.07 -8.46 16 22 C -0.20 -6.44 10.00 22.47 0.22 -6.22 16 23 C 0.16 4.19 7.25 39.07 0.28 4.47 16 24 N -0.56 -11.17 6.20 -180.36 -1.12 -12.29 16 25 H 0.43 6.19 8.96 -92.71 -0.83 5.36 16 26 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 27 H 0.15 3.29 8.06 -2.92 -0.02 3.27 16 28 H 0.12 4.78 5.05 -2.91 -0.01 4.77 16 29 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 30 H 0.12 5.54 5.96 -2.39 -0.01 5.53 16 31 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -55.23 298.30 4.89 -50.34 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.36 Total: 15.54 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 3.98 Total: -15.68 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.52 Total: -67.75 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.89 Total: -15.31 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Atomic # 17 Polarization: -8.39 SS G_CDS: -0.07 Total: -8.46 kcal Total: -55.23 4.89 -50.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233997713.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.052 kcal (2) G-P(sol) polarization free energy of solvation -55.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds