Wall clock time and date at job start Tue Mar 31 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36006 * 117.00493 * 2 1 4 4 C 1.38674 * 120.00338 * 0.02562 * 3 2 1 5 5 C 1.38135 * 120.01542 * 179.97438 * 4 3 2 6 6 C 1.38715 * 120.01791 * 0.04209 * 5 4 3 7 7 O 1.35981 * 119.99291 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00161 * 356.50529 * 7 6 5 9 9 H 1.09002 * 109.46738 * 27.01743 * 8 7 6 10 10 C 1.50700 * 109.46825 * 147.01328 * 8 7 6 11 11 H 1.08000 * 120.00202 * 359.97438 * 10 8 7 12 12 C 1.37878 * 119.99764 * 180.02562 * 10 8 7 13 13 N 1.31514 * 119.99987 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00034 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47453 * 89.99687 * 14 12 10 16 16 H 1.48502 * 109.46864 * 210.00033 * 14 12 10 17 17 H 1.48499 * 109.46791 * 329.99590 * 14 12 10 18 18 C 1.52993 * 109.47130 * 267.01131 * 8 7 6 19 19 Cl 1.80301 * 109.47163 * 65.00111 * 18 8 7 20 20 C 1.38674 * 120.00963 * 359.68291 * 6 5 4 21 21 C 1.38242 * 119.98403 * 0.57277 * 20 6 5 22 22 Cl 1.73601 * 120.01038 * 179.72329 * 21 20 6 23 23 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47124 * 300.00350 * 1 2 3 25 25 H 1.09004 * 109.47003 * 59.99497 * 1 2 3 26 26 H 1.08001 * 119.98951 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.98913 * 180.02562 * 5 4 3 28 28 H 0.97003 * 119.99930 * 180.02562 * 13 12 10 29 29 H 1.08993 * 109.47058 * 184.99913 * 18 8 7 30 30 H 1.08997 * 109.47695 * 305.00501 * 18 8 7 31 31 H 1.07993 * 120.01036 * 180.30109 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2914 2.3749 0.0005 5 6 1.9184 3.6058 0.0011 6 6 3.3036 3.6790 0.0002 7 8 3.9203 4.8909 0.0012 8 6 3.0818 6.0456 -0.0744 9 1 2.1038 5.8126 0.3469 10 6 3.7085 7.1733 0.7044 11 1 4.6525 7.0232 1.2072 12 6 3.0762 8.3965 0.7759 13 7 1.9265 8.5792 0.1641 14 14 3.8534 9.7946 1.7407 15 1 4.7373 10.5829 0.8449 16 1 2.7870 10.6743 2.2832 17 1 4.6535 9.2381 2.8610 18 6 2.9205 6.4639 -1.5371 19 17 2.0387 5.1743 -2.4373 20 6 4.0596 2.5164 0.0054 21 6 3.4324 1.2845 -0.0005 22 17 4.3782 -0.1713 -0.0012 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2129 2.3183 0.0005 27 1 1.3299 4.5113 0.0019 28 1 1.4818 9.4398 0.2142 29 1 2.3553 7.3944 -1.5888 30 1 3.9039 6.6109 -1.9836 31 1 5.1380 2.5734 0.0096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234221496.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:20 Heat of formation + Delta-G solvation = -68.617221 kcal Electronic energy + Delta-G solvation = -18678.624884 eV Core-core repulsion = 15398.696400 eV Total energy + Delta-G solvation = -3279.928484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04573 -38.56524 -36.57254 -35.71436 -34.84610 -33.45415 -30.71618 -29.83485 -28.59546 -26.86645 -25.38908 -23.09440 -21.94590 -20.56317 -18.27113 -17.13578 -16.99381 -16.03792 -15.64357 -14.96416 -14.84666 -14.38004 -14.04435 -13.78460 -13.47058 -13.04750 -12.84201 -12.36498 -12.14453 -12.03823 -11.53898 -11.34556 -11.28245 -11.13871 -11.02031 -10.78758 -10.60700 -10.41070 -10.27599 -9.65108 -9.43378 -9.08771 -8.73523 -8.53425 -7.17828 -6.49682 -4.57311 1.46472 1.79956 2.38621 3.09124 3.17703 3.21356 3.33582 3.40777 4.00152 4.02112 4.39400 4.86948 4.98748 5.10632 5.19884 5.37107 5.48057 5.53783 5.72050 5.99732 6.09205 6.12714 6.21764 6.48543 6.62638 6.80848 6.83952 7.08583 7.45692 7.50564 7.69181 8.23733 8.60630 9.10904 10.57452 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.004712 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.698760 B = 5940.769138 C = 6332.867866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.079 3.921 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.139 3.861 7 O -0.307 6.307 8 C 0.206 3.794 9 H 0.051 0.949 10 C -0.522 4.522 11 H 0.077 0.923 12 C 0.064 3.936 13 N -0.889 5.889 14 Si 0.917 3.083 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.036 4.036 19 Cl -0.241 7.241 20 C -0.127 4.127 21 C -0.031 4.031 22 Cl -0.068 7.068 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.132 0.868 27 H 0.147 0.853 28 H 0.272 0.728 29 H 0.134 0.866 30 H 0.075 0.925 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 -10.547 -0.895 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.034 3.966 4 C -0.176 4.176 5 C -0.167 4.167 6 C 0.092 3.908 7 O -0.220 6.220 8 C 0.151 3.849 9 H 0.068 0.932 10 C -0.559 4.559 11 H 0.096 0.904 12 C -0.139 4.139 13 N -0.526 5.526 14 Si 0.743 3.257 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.099 4.099 19 Cl -0.216 7.216 20 C -0.146 4.146 21 C -0.058 4.058 22 Cl -0.039 7.039 23 H 0.114 0.886 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.164 0.836 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.062 -10.745 -0.984 10.985 hybrid contribution -0.172 0.886 0.258 0.938 sum -2.235 -9.859 -0.726 10.135 Atomic orbital electron populations 1.22989 0.78951 1.03420 1.01269 1.86096 1.20750 1.26161 1.89623 1.18388 0.90240 0.84866 1.03121 1.20898 0.99661 0.91125 1.05931 1.21461 0.94352 0.98709 1.02139 1.18764 0.90549 0.86731 0.94791 1.86163 1.37594 1.11809 1.86466 1.20559 0.92119 0.81109 0.91143 0.93150 1.21020 1.08598 0.94617 1.31715 0.90443 1.24979 0.94674 0.98813 0.95435 1.69790 1.15238 1.25355 1.42258 0.86165 0.78892 0.80623 0.80015 1.20108 1.20751 1.19341 1.25793 0.97878 0.92662 0.93555 1.98644 1.81444 1.60972 1.80495 1.19973 1.00458 0.87856 1.06348 1.19615 0.88187 0.87618 1.10375 1.98325 1.72165 1.36268 1.97189 0.88616 0.92829 0.92856 0.85060 0.83601 0.91754 0.84814 0.90590 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.56 9.95 -19.76 -0.20 -4.76 16 3 C 0.08 1.29 6.68 -39.22 -0.26 1.03 16 4 C -0.16 -2.53 9.03 -39.46 -0.36 -2.89 16 5 C -0.15 -2.75 7.04 -39.44 -0.28 -3.03 16 6 C 0.14 2.75 5.96 -39.24 -0.23 2.52 16 7 O -0.31 -6.85 9.73 -19.68 -0.19 -7.04 16 8 C 0.21 4.79 2.19 -27.89 -0.06 4.73 16 9 H 0.05 1.23 5.39 -51.93 -0.28 0.95 16 10 C -0.52 -13.15 8.89 -34.44 -0.31 -13.45 16 11 H 0.08 1.97 7.81 -52.49 -0.41 1.56 16 12 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 13 N -0.89 -22.37 11.29 55.43 0.63 -21.74 16 14 Si 0.92 19.38 29.54 -169.99 -5.02 14.36 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 C -0.04 -0.80 6.17 37.15 0.23 -0.57 16 19 Cl -0.24 -4.81 25.60 -51.86 -1.33 -6.13 16 20 C -0.13 -2.27 9.76 -39.42 -0.38 -2.65 16 21 C -0.03 -0.52 6.33 -39.38 -0.25 -0.77 16 22 Cl -0.07 -1.03 28.50 -51.86 -1.48 -2.51 16 23 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 25 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 26 H 0.13 1.76 6.29 -52.49 -0.33 1.43 16 27 H 0.15 2.86 5.10 -52.49 -0.27 2.59 16 28 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.13 3.15 5.95 -51.93 -0.31 2.84 16 30 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 31 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -25.69 291.62 -6.99 -32.68 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -2.80 Total: 3.04 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -1.00 Total: -12.29 kcal Atomic # 7 Polarization: -22.37 SS G_CDS: 0.63 Total: -21.74 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.39 Total: -11.80 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 17 Polarization: -5.83 SS G_CDS: -2.81 Total: -8.64 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.69 -6.99 -32.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234221496.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.935 kcal (2) G-P(sol) polarization free energy of solvation -25.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds