Wall clock time and date at job start Tue Mar 31 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36006 * 117.00493 * 2 1 4 4 C 1.38674 * 120.00338 * 0.02562 * 3 2 1 5 5 C 1.38135 * 120.01542 * 179.97438 * 4 3 2 6 6 C 1.38715 * 120.01791 * 0.04209 * 5 4 3 7 7 O 1.35981 * 119.99291 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00161 * 356.50529 * 7 6 5 9 9 H 1.09002 * 109.46738 * 27.01743 * 8 7 6 10 10 C 1.50700 * 109.46825 * 147.01328 * 8 7 6 11 11 H 1.08000 * 120.00202 * 359.97438 * 10 8 7 12 12 C 1.37878 * 119.99764 * 180.02562 * 10 8 7 13 13 N 1.31514 * 119.99987 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00034 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47453 * 89.99687 * 14 12 10 16 16 H 1.48502 * 109.46864 * 210.00033 * 14 12 10 17 17 H 1.48499 * 109.46791 * 329.99590 * 14 12 10 18 18 C 1.52993 * 109.47130 * 267.01131 * 8 7 6 19 19 Cl 1.80301 * 109.47163 * 65.00111 * 18 8 7 20 20 C 1.38674 * 120.00963 * 359.68291 * 6 5 4 21 21 C 1.38242 * 119.98403 * 0.57277 * 20 6 5 22 22 Cl 1.73601 * 120.01038 * 179.72329 * 21 20 6 23 23 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47124 * 300.00350 * 1 2 3 25 25 H 1.09004 * 109.47003 * 59.99497 * 1 2 3 26 26 H 1.08001 * 119.98951 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.98913 * 180.02562 * 5 4 3 28 28 H 0.97003 * 119.99930 * 180.02562 * 13 12 10 29 29 H 1.08993 * 109.47058 * 184.99913 * 18 8 7 30 30 H 1.08997 * 109.47695 * 305.00501 * 18 8 7 31 31 H 1.07993 * 120.01036 * 180.30109 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2914 2.3749 0.0005 5 6 1.9184 3.6058 0.0011 6 6 3.3036 3.6790 0.0002 7 8 3.9203 4.8909 0.0012 8 6 3.0818 6.0456 -0.0744 9 1 2.1038 5.8126 0.3469 10 6 3.7085 7.1733 0.7044 11 1 4.6525 7.0232 1.2072 12 6 3.0762 8.3965 0.7759 13 7 1.9265 8.5792 0.1641 14 14 3.8534 9.7946 1.7407 15 1 4.7373 10.5829 0.8449 16 1 2.7870 10.6743 2.2832 17 1 4.6535 9.2381 2.8610 18 6 2.9205 6.4639 -1.5371 19 17 2.0387 5.1743 -2.4373 20 6 4.0596 2.5164 0.0054 21 6 3.4324 1.2845 -0.0005 22 17 4.3782 -0.1713 -0.0012 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2129 2.3183 0.0005 27 1 1.3299 4.5113 0.0019 28 1 1.4818 9.4398 0.2142 29 1 2.3553 7.3944 -1.5888 30 1 3.9039 6.6109 -1.9836 31 1 5.1380 2.5734 0.0096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234221496.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:20 Heat of formation + Delta-G solvation = -81.531668 kcal Electronic energy + Delta-G solvation = -18679.184897 eV Core-core repulsion = 15398.696400 eV Total energy + Delta-G solvation = -3280.488497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39524 -39.96807 -37.87328 -37.10533 -36.48758 -35.27336 -32.14297 -31.42547 -29.97444 -27.91392 -27.25236 -24.60712 -23.30223 -22.14298 -19.63975 -18.78008 -18.49737 -17.49964 -16.74971 -16.62524 -16.33032 -15.92311 -15.45591 -15.04712 -14.92136 -14.64947 -14.16737 -13.85277 -13.71943 -13.51123 -13.02367 -12.89419 -12.75947 -12.55956 -12.42114 -12.27599 -11.95310 -11.87725 -11.77823 -11.36514 -11.13651 -10.72174 -10.54168 -9.87993 -8.59836 -8.36500 -6.51852 0.10088 0.42864 1.08782 1.41137 1.45347 1.55331 1.61487 2.26473 2.34571 2.62636 2.77122 2.99016 3.76236 3.92813 4.09583 4.32191 4.33723 4.41253 4.44145 4.48156 4.64583 4.74106 4.78243 4.91724 5.14944 5.25609 5.33964 5.47732 5.58289 5.85289 6.31041 6.48339 6.81003 7.20688 8.69735 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.004712 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.698760 B = 5940.769138 C = 6332.867866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.321 6.321 3 C 0.089 3.911 4 C -0.153 4.153 5 C -0.154 4.154 6 C 0.108 3.892 7 O -0.324 6.324 8 C 0.211 3.789 9 H 0.036 0.964 10 C -0.548 4.548 11 H 0.066 0.934 12 C 0.029 3.971 13 N -0.908 5.908 14 Si 0.975 3.025 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.270 1.270 18 C -0.027 4.027 19 Cl -0.222 7.222 20 C -0.126 4.126 21 C -0.040 4.040 22 Cl -0.052 7.052 23 H 0.124 0.876 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.160 0.840 27 H 0.132 0.868 28 H 0.276 0.724 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 -11.615 -0.820 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.043 3.957 4 C -0.171 4.171 5 C -0.173 4.173 6 C 0.062 3.938 7 O -0.239 6.239 8 C 0.156 3.844 9 H 0.054 0.946 10 C -0.585 4.585 11 H 0.084 0.916 12 C -0.172 4.172 13 N -0.545 5.545 14 Si 0.799 3.201 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.195 1.195 18 C -0.090 4.090 19 Cl -0.196 7.196 20 C -0.145 4.145 21 C -0.068 4.068 22 Cl -0.023 7.023 23 H 0.142 0.858 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.178 0.822 27 H 0.150 0.850 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.093 0.907 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.697 -11.841 -0.917 12.179 hybrid contribution -0.066 0.998 0.213 1.022 sum -2.763 -10.843 -0.703 11.212 Atomic orbital electron populations 1.23364 0.76484 1.05698 1.02169 1.86105 1.23259 1.25038 1.89093 1.18487 0.90224 0.85619 1.01368 1.21129 1.01098 0.90070 1.04845 1.21385 0.93827 0.99190 1.02923 1.18985 0.91375 0.86212 0.97213 1.86097 1.37846 1.12464 1.87478 1.20313 0.91365 0.81254 0.91442 0.94612 1.21236 1.08607 0.95925 1.32762 0.91561 1.25665 0.94987 1.00546 0.96006 1.69868 1.15950 1.25958 1.42724 0.85278 0.78192 0.77921 0.78732 1.19458 1.20142 1.19464 1.25442 0.97727 0.92489 0.93338 1.98635 1.81016 1.60045 1.79894 1.20068 1.00847 0.87741 1.05886 1.19732 0.88922 0.87905 1.10215 1.98327 1.71817 1.35040 1.97090 0.85825 0.91764 0.92036 0.82245 0.85038 0.91449 0.86352 0.90654 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -8.48 9.95 -93.62 -0.93 -9.42 16 3 C 0.09 2.73 6.68 22.50 0.15 2.88 16 4 C -0.15 -4.67 9.03 22.35 0.20 -4.47 16 5 C -0.15 -5.71 7.04 22.36 0.16 -5.56 16 6 C 0.11 4.33 5.96 22.49 0.13 4.46 16 7 O -0.32 -14.86 9.73 -93.34 -0.91 -15.77 16 8 C 0.21 10.13 2.19 29.85 0.07 10.19 16 9 H 0.04 1.82 5.39 -2.39 -0.01 1.80 16 10 C -0.55 -28.24 8.89 25.60 0.23 -28.01 16 11 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 12 C 0.03 1.46 5.29 84.65 0.45 1.91 16 13 N -0.91 -46.02 11.29 21.45 0.24 -45.77 16 14 Si 0.97 39.65 29.54 68.60 2.03 41.67 16 15 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 16 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 C -0.03 -1.21 6.17 71.98 0.44 -0.77 16 19 Cl -0.22 -8.79 25.60 -2.72 -0.07 -8.86 16 20 C -0.13 -4.46 9.76 22.37 0.22 -4.24 16 21 C -0.04 -1.31 6.33 22.40 0.14 -1.17 16 22 Cl -0.05 -1.47 28.50 -2.72 -0.08 -1.54 16 23 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 25 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 26 H 0.16 3.85 6.29 -2.91 -0.02 3.84 16 27 H 0.13 5.24 5.10 -2.91 -0.01 5.23 16 28 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 29 H 0.12 5.69 5.95 -2.39 -0.01 5.67 16 30 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.15 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -54.30 291.62 4.75 -49.55 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.17 Total: 13.50 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.30 Total: -23.36 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.24 Total: -45.77 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.84 Total: -25.18 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 17 Polarization: -10.26 SS G_CDS: -0.15 Total: -10.41 kcal Total: -54.30 4.75 -49.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234221496.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.986 kcal (2) G-P(sol) polarization free energy of solvation -54.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds