Wall clock time and date at job start Tue Mar 31 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99954 * 2 1 4 4 H 1.48506 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46947 * 299.99703 * 3 2 1 6 6 H 1.48503 * 109.47126 * 59.99900 * 3 2 1 7 7 C 1.37880 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00217 * 188.45887 * 7 2 1 9 9 C 1.50699 * 119.99579 * 8.46440 * 7 2 1 10 10 H 1.09001 * 109.46438 * 185.46022 * 9 7 2 11 11 O 1.42894 * 109.47224 * 305.45274 * 9 7 2 12 12 C 1.35450 * 117.00517 * 270.00514 * 11 9 7 13 13 N 1.32335 * 119.19264 * 180.02562 * 12 11 9 14 14 C 1.32323 * 120.79672 * 179.97438 * 13 12 11 15 15 C 1.38515 * 119.19350 * 359.97438 * 14 13 12 16 16 C 1.38775 * 118.50681 * 0.27720 * 15 14 13 17 17 Cl 1.73598 * 120.42601 * 179.70364 * 16 15 14 18 18 N 1.32298 * 119.18869 * 359.97438 * 12 11 9 19 19 C 1.50701 * 109.47276 * 65.46251 * 9 7 2 20 20 C 1.38233 * 119.99310 * 269.26489 * 19 9 7 21 21 C 1.38238 * 119.99969 * 179.80835 * 20 19 9 22 22 C 1.38236 * 119.99587 * 0.39870 * 21 20 19 23 23 C 1.38234 * 119.99955 * 359.85904 * 22 21 20 24 24 C 1.38231 * 120.00472 * 359.95021 * 23 22 21 25 25 H 0.97005 * 119.99979 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.40287 * 179.97438 * 14 13 12 27 27 H 1.08001 * 120.74553 * 179.97438 * 15 14 13 28 28 H 1.08002 * 120.00477 * 0.02562 * 20 19 9 29 29 H 1.07993 * 120.00242 * 180.23452 * 21 20 19 30 30 H 1.07997 * 120.00122 * 179.82809 * 22 21 20 31 31 H 1.08001 * 119.99893 * 179.97438 * 23 22 21 32 32 H 1.07994 * 120.00550 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0757 -1.1991 0.1381 9 6 1.2632 -2.4921 -0.1910 10 1 1.9532 -3.3264 -0.0649 11 8 0.2160 -2.5898 0.7763 12 6 0.5228 -3.1772 1.9576 13 7 -0.4148 -3.2909 2.8846 14 6 -0.1501 -3.8597 4.0497 15 6 1.1263 -4.3393 4.2929 16 6 2.0867 -4.1990 3.3010 17 17 3.7043 -4.7754 3.5558 18 7 1.7521 -3.6241 2.1560 19 6 0.6727 -2.5336 -1.5769 20 6 -0.6053 -2.0554 -1.7980 21 6 -1.1457 -2.0898 -3.0700 22 6 -0.4110 -2.6100 -4.1191 23 6 0.8649 -3.0930 -3.8968 24 6 1.4068 -3.0550 -2.6257 25 1 -0.4850 0.8401 -0.0004 26 1 -0.9200 -3.9487 4.8018 27 1 1.3700 -4.8076 5.2351 28 1 -1.1804 -1.6517 -0.9778 29 1 -2.1426 -1.7127 -3.2435 30 1 -0.8342 -2.6394 -5.1123 31 1 1.4387 -3.4998 -4.7164 32 1 2.4038 -3.4321 -2.4521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234538032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:03 Heat of formation + Delta-G solvation = 44.926038 kcal Electronic energy + Delta-G solvation = -20290.712111 eV Core-core repulsion = 17050.432833 eV Total energy + Delta-G solvation = -3240.279278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56922 -38.52428 -37.05880 -36.47890 -33.15915 -33.09940 -31.08488 -30.32528 -29.83940 -27.01742 -24.30222 -23.70125 -22.76561 -21.55618 -20.32942 -18.17434 -17.55952 -16.56670 -15.83854 -15.60328 -15.15897 -14.76507 -14.60007 -14.24411 -13.67379 -13.59765 -13.26599 -12.93052 -12.45794 -12.20961 -11.81657 -11.66140 -11.39773 -11.23202 -11.05943 -10.64331 -10.57879 -10.53527 -10.15542 -10.07920 -9.68613 -9.46391 -8.80890 -8.69839 -8.21529 -7.95941 -7.65219 -6.21887 -4.39847 1.32147 1.48890 1.87723 2.28140 2.39566 3.17943 3.27384 3.31456 3.55476 4.22365 4.28040 4.63033 4.78449 5.05190 5.09478 5.26804 5.41824 5.68219 5.73322 5.80115 5.89832 6.18827 6.36622 6.53504 6.60301 6.71942 6.89684 7.06333 7.24021 7.33355 7.48016 7.66238 7.77546 7.85784 8.02445 8.10804 8.58952 8.85302 9.32221 10.76078 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.006161 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.259181 B = 4543.351551 C = 5191.770293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.081 3.919 3 Si 0.893 3.107 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.242 3.758 10 H 0.058 0.942 11 O -0.248 6.248 12 C 0.547 3.453 13 N -0.533 5.533 14 C 0.197 3.803 15 C -0.288 4.288 16 C 0.263 3.737 17 Cl -0.034 7.034 18 N -0.556 5.556 19 C -0.040 4.040 20 C -0.070 4.070 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.122 4.122 25 H 0.266 0.734 26 H 0.175 0.825 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 -7.713 4.000 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.128 4.128 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.188 3.812 10 H 0.076 0.924 11 O -0.145 6.145 12 C 0.249 3.751 13 N -0.261 5.261 14 C 0.029 3.971 15 C -0.313 4.313 16 C 0.087 3.913 17 Cl -0.006 7.006 18 N -0.290 5.290 19 C -0.040 4.040 20 C -0.088 4.088 21 C -0.158 4.158 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.140 4.140 25 H 0.076 0.924 26 H 0.192 0.808 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.002 -7.018 2.844 7.573 hybrid contribution 1.147 0.705 0.699 1.517 sum 1.145 -6.313 3.543 7.330 Atomic orbital electron populations 1.69973 1.05917 1.27011 1.44276 1.25078 0.94873 0.99548 0.93262 0.86512 0.80520 0.83152 0.77841 1.19376 1.20488 1.20793 1.21302 0.94415 0.89672 1.51972 0.91016 1.19140 0.83616 0.97809 0.80619 0.92408 1.86471 1.41919 1.67356 1.18763 1.20951 0.81969 0.83816 0.88387 1.67750 1.35407 1.20754 1.02149 1.23015 0.94396 0.87456 0.92236 1.22225 0.95034 1.11883 1.02155 1.21680 0.87601 0.91666 0.90319 1.98396 1.20869 1.85921 1.95415 1.67486 1.21069 1.16969 1.23446 1.19948 0.93752 0.95107 0.95241 1.21504 0.95485 0.94793 0.97029 1.21128 0.99499 1.01402 0.93774 1.20869 0.95395 1.01992 0.98110 1.20789 0.95931 1.02556 0.96330 1.20752 0.99434 1.01176 0.92680 0.92432 0.80769 0.83446 0.83363 0.87519 0.87752 0.87434 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.49 9.55 55.43 0.53 -21.96 16 2 C 0.08 2.15 5.22 -17.82 -0.09 2.06 16 3 Si 0.89 20.84 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.54 -14.31 8.85 -34.44 -0.30 -14.61 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C 0.24 6.01 2.31 -29.03 -0.07 5.94 16 10 H 0.06 1.41 6.90 -51.93 -0.36 1.06 16 11 O -0.25 -6.30 7.67 -18.04 -0.14 -6.43 16 12 C 0.55 12.52 8.45 -91.25 -0.77 11.75 16 13 N -0.53 -10.82 10.46 -14.75 -0.15 -10.98 16 14 C 0.20 2.94 11.30 -17.24 -0.19 2.74 16 15 C -0.29 -4.06 9.97 -39.28 -0.39 -4.46 16 16 C 0.26 4.56 7.33 -17.10 -0.13 4.43 16 17 Cl -0.03 -0.50 29.15 -51.86 -1.51 -2.02 16 18 N -0.56 -11.87 8.66 -11.82 -0.10 -11.97 16 19 C -0.04 -0.93 4.82 -104.62 -0.50 -1.44 16 20 C -0.07 -1.61 8.08 -39.58 -0.32 -1.93 16 21 C -0.14 -2.80 10.05 -39.58 -0.40 -3.19 16 22 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 23 C -0.14 -2.54 10.05 -39.59 -0.40 -2.94 16 24 C -0.12 -2.54 9.70 -39.59 -0.38 -2.92 16 25 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 26 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.15 3.74 5.99 -52.49 -0.31 3.43 16 29 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -29.35 299.92 -8.99 -38.34 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -2.76 Total: 2.32 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -4.35 Total: -7.62 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.27 Total: -44.92 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.14 Total: -6.43 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.35 -8.99 -38.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234538032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.264 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds