Wall clock time and date at job start Tue Mar 31 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99954 * 2 1 4 4 H 1.48506 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46947 * 299.99703 * 3 2 1 6 6 H 1.48503 * 109.47126 * 59.99900 * 3 2 1 7 7 C 1.37880 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00217 * 188.45887 * 7 2 1 9 9 C 1.50699 * 119.99579 * 8.46440 * 7 2 1 10 10 H 1.09001 * 109.46438 * 185.46022 * 9 7 2 11 11 O 1.42894 * 109.47224 * 305.45274 * 9 7 2 12 12 C 1.35450 * 117.00517 * 270.00514 * 11 9 7 13 13 N 1.32335 * 119.19264 * 180.02562 * 12 11 9 14 14 C 1.32323 * 120.79672 * 179.97438 * 13 12 11 15 15 C 1.38515 * 119.19350 * 359.97438 * 14 13 12 16 16 C 1.38775 * 118.50681 * 0.27720 * 15 14 13 17 17 Cl 1.73598 * 120.42601 * 179.70364 * 16 15 14 18 18 N 1.32298 * 119.18869 * 359.97438 * 12 11 9 19 19 C 1.50701 * 109.47276 * 65.46251 * 9 7 2 20 20 C 1.38233 * 119.99310 * 269.26489 * 19 9 7 21 21 C 1.38238 * 119.99969 * 179.80835 * 20 19 9 22 22 C 1.38236 * 119.99587 * 0.39870 * 21 20 19 23 23 C 1.38234 * 119.99955 * 359.85904 * 22 21 20 24 24 C 1.38231 * 120.00472 * 359.95021 * 23 22 21 25 25 H 0.97005 * 119.99979 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.40287 * 179.97438 * 14 13 12 27 27 H 1.08001 * 120.74553 * 179.97438 * 15 14 13 28 28 H 1.08002 * 120.00477 * 0.02562 * 20 19 9 29 29 H 1.07993 * 120.00242 * 180.23452 * 21 20 19 30 30 H 1.07997 * 120.00122 * 179.82809 * 22 21 20 31 31 H 1.08001 * 119.99893 * 179.97438 * 23 22 21 32 32 H 1.07994 * 120.00550 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0757 -1.1991 0.1381 9 6 1.2632 -2.4921 -0.1910 10 1 1.9532 -3.3264 -0.0649 11 8 0.2160 -2.5898 0.7763 12 6 0.5228 -3.1772 1.9576 13 7 -0.4148 -3.2909 2.8846 14 6 -0.1501 -3.8597 4.0497 15 6 1.1263 -4.3393 4.2929 16 6 2.0867 -4.1990 3.3010 17 17 3.7043 -4.7754 3.5558 18 7 1.7521 -3.6241 2.1560 19 6 0.6727 -2.5336 -1.5769 20 6 -0.6053 -2.0554 -1.7980 21 6 -1.1457 -2.0898 -3.0700 22 6 -0.4110 -2.6100 -4.1191 23 6 0.8649 -3.0930 -3.8968 24 6 1.4068 -3.0550 -2.6257 25 1 -0.4850 0.8401 -0.0004 26 1 -0.9200 -3.9487 4.8018 27 1 1.3700 -4.8076 5.2351 28 1 -1.1804 -1.6517 -0.9778 29 1 -2.1426 -1.7127 -3.2435 30 1 -0.8342 -2.6394 -5.1123 31 1 1.4387 -3.4998 -4.7164 32 1 2.4038 -3.4321 -2.4521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234538032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:03 Heat of formation + Delta-G solvation = 26.100788 kcal Electronic energy + Delta-G solvation = -20291.528435 eV Core-core repulsion = 17050.432833 eV Total energy + Delta-G solvation = -3241.095602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.02366 -40.13752 -38.63938 -37.78514 -34.98466 -34.57946 -32.71313 -31.81210 -31.40084 -28.83692 -25.84435 -25.20659 -24.38157 -23.11900 -21.96194 -19.81221 -19.05831 -18.28243 -17.33780 -17.17800 -16.74167 -16.45172 -16.02255 -15.82051 -15.25421 -15.02901 -14.81441 -14.51065 -14.00558 -13.74706 -13.54104 -13.37598 -12.98098 -12.90016 -12.52626 -12.39471 -12.26751 -11.90420 -11.79450 -11.53014 -11.43731 -11.13696 -10.75467 -10.17997 -9.73085 -9.54197 -9.30714 -8.16714 -6.42303 -0.04740 0.15214 0.58165 0.69610 0.82101 1.31745 1.35052 1.45290 2.02274 2.32500 2.80829 3.05078 3.20028 3.32851 3.76760 3.94690 4.24709 4.25920 4.31179 4.45544 4.54110 4.57894 4.78784 4.94702 5.05088 5.21812 5.32467 5.49087 5.58197 5.76628 5.84347 5.90478 5.94094 6.16614 6.38595 6.42390 6.72924 7.21598 7.35796 8.78742 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.006161 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.259181 B = 4543.351551 C = 5191.770293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.556 4.556 8 H 0.055 0.945 9 C 0.251 3.749 10 H 0.044 0.956 11 O -0.276 6.276 12 C 0.516 3.484 13 N -0.561 5.561 14 C 0.198 3.802 15 C -0.256 4.256 16 C 0.236 3.764 17 Cl -0.015 7.015 18 N -0.587 5.587 19 C -0.069 4.069 20 C -0.092 4.092 21 C -0.145 4.145 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.136 4.136 25 H 0.264 0.736 26 H 0.230 0.770 27 H 0.198 0.802 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -8.554 4.071 9.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.073 0.927 9 C 0.197 3.803 10 H 0.062 0.938 11 O -0.174 6.174 12 C 0.216 3.784 13 N -0.290 5.290 14 C 0.032 3.968 15 C -0.280 4.280 16 C 0.063 3.937 17 Cl 0.014 6.986 18 N -0.322 5.322 19 C -0.070 4.070 20 C -0.111 4.111 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.154 4.154 25 H 0.073 0.927 26 H 0.246 0.754 27 H 0.215 0.785 28 H 0.135 0.865 29 H 0.146 0.854 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.004 -7.891 2.958 8.427 hybrid contribution 1.166 0.787 0.818 1.627 sum 1.170 -7.103 3.776 8.129 Atomic orbital electron populations 1.70120 1.06667 1.27164 1.44981 1.25659 0.95596 1.01890 0.93193 0.85702 0.79350 0.80013 0.77831 1.19381 1.19930 1.20661 1.21381 0.93772 0.91236 1.52892 0.92690 1.18924 0.83568 0.96284 0.81566 0.93806 1.86355 1.41905 1.69036 1.20089 1.21090 0.83216 0.85651 0.88463 1.67750 1.35517 1.22138 1.03564 1.24015 0.96164 0.85389 0.91216 1.22785 0.93589 1.08969 1.02641 1.22234 0.89246 0.91945 0.90230 1.98396 1.19568 1.85512 1.95137 1.67381 1.20876 1.18211 1.25712 1.20052 0.94632 0.97081 0.95245 1.21299 0.95586 0.96428 0.97739 1.21392 1.00669 1.01242 0.92987 1.21329 0.94940 0.99801 0.99304 1.21242 0.96261 1.01087 0.96160 1.20988 0.99779 1.01332 0.93307 0.92683 0.75392 0.78492 0.86462 0.85437 0.83543 0.83477 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.97 9.55 21.45 0.20 -47.76 16 2 C 0.04 2.37 5.22 84.66 0.44 2.81 16 3 Si 0.95 43.92 29.55 68.60 2.03 45.95 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.56 -31.18 8.85 25.60 0.23 -30.96 16 8 H 0.05 3.14 7.83 -2.91 -0.02 3.11 16 9 C 0.25 13.23 2.31 29.10 0.07 13.30 16 10 H 0.04 2.32 6.90 -2.39 -0.02 2.30 16 11 O -0.28 -14.87 7.67 -87.48 -0.67 -15.54 16 12 C 0.52 24.63 8.45 180.57 1.53 26.16 16 13 N -0.56 -23.02 10.46 -313.53 -3.28 -26.30 16 14 C 0.20 5.44 11.30 84.68 0.96 6.40 16 15 C -0.26 -6.51 9.97 22.46 0.22 -6.28 16 16 C 0.24 8.05 7.33 84.73 0.62 8.67 16 17 Cl -0.01 -0.41 29.15 -2.72 -0.08 -0.49 16 18 N -0.59 -25.94 8.66 -304.29 -2.63 -28.58 16 19 C -0.07 -3.40 4.82 -19.87 -0.10 -3.50 16 20 C -0.09 -4.41 8.08 22.27 0.18 -4.23 16 21 C -0.14 -5.69 10.05 22.27 0.22 -5.47 16 22 C -0.14 -4.56 10.05 22.27 0.22 -4.34 16 23 C -0.13 -4.47 10.05 22.27 0.22 -4.24 16 24 C -0.14 -5.67 9.70 22.27 0.22 -5.46 16 25 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 26 H 0.23 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.12 6.32 5.99 -2.91 -0.02 6.30 16 29 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -69.12 299.92 1.76 -67.37 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.15 Total: 12.50 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 5.03 Total: -7.14 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -5.71 Total: -102.64 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.67 Total: -15.54 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -69.12 1.76 -67.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234538032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.468 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds