Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36024 * 116.99670 * 2 1 4 4 C 1.38669 * 120.07060 * 90.00707 * 3 2 1 5 5 Cl 1.73594 * 120.01152 * 0.02562 * 4 3 2 6 6 C 1.38335 * 119.97382 * 179.74053 * 4 3 2 7 7 C 1.38252 * 120.13423 * 0.27496 * 6 4 3 8 8 C 1.38227 * 120.15628 * 359.97438 * 7 6 4 9 9 C 1.38594 * 120.01712 * 0.02562 * 8 7 6 10 10 O 1.36001 * 120.06327 * 179.97438 * 9 8 7 11 11 C 1.42894 * 117.00279 * 356.72902 * 10 9 8 12 12 H 1.09006 * 109.47157 * 26.86145 * 11 10 9 13 13 C 1.50703 * 109.47005 * 146.85615 * 11 10 9 14 14 H 1.07995 * 120.00166 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99865 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99773 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 119.99956 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.46773 * 89.99903 * 17 15 13 19 19 H 1.48499 * 109.47364 * 209.99824 * 17 15 13 20 20 H 1.48503 * 109.47356 * 330.00403 * 17 15 13 21 21 C 1.52998 * 109.47479 * 266.86121 * 11 10 9 22 22 Cl 1.80296 * 109.47213 * 64.99791 * 21 11 10 23 23 H 1.08997 * 109.46668 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46676 * 299.99778 * 1 2 3 25 25 H 1.08997 * 109.47314 * 59.99595 * 1 2 3 26 26 H 1.08007 * 119.92840 * 180.24750 * 6 4 3 27 27 H 1.08004 * 119.91870 * 180.02562 * 7 6 4 28 28 H 1.07996 * 119.99354 * 180.02562 * 8 7 6 29 29 H 0.97000 * 119.99735 * 180.02562 * 16 15 13 30 30 H 1.09003 * 109.46960 * 184.99809 * 21 11 10 31 31 H 1.08995 * 109.47140 * 304.99797 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 2.3621 1.8311 1.2001 5 17 1.9698 1.0592 2.7047 6 6 2.9948 3.0612 1.1977 7 6 3.3086 3.6780 0.0009 8 6 2.9919 3.0683 -1.1985 9 6 2.3580 1.8358 -1.2036 10 8 2.0455 1.2353 -2.3832 11 6 2.3347 1.9631 -3.5784 12 1 3.1619 2.6490 -3.3951 13 6 2.7141 1.0000 -4.6737 14 1 2.7321 -0.0617 -4.4768 15 6 3.0381 1.4744 -5.9271 16 7 3.0166 2.7674 -6.1666 17 14 3.5077 0.2806 -7.2849 18 1 2.2885 -0.1290 -8.0273 19 1 4.4570 0.9399 -8.2173 20 1 4.1508 -0.9183 -6.6895 21 6 1.0982 2.7576 -4.0035 22 17 0.7314 4.0099 -2.7594 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.2439 3.5408 2.1328 27 1 3.8030 4.6383 0.0031 28 1 3.2386 3.5523 -2.1319 29 1 3.2442 3.1010 -7.0485 30 1 1.2891 3.2419 -4.9613 31 1 0.2482 2.0823 -4.1009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234638685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -67.746469 kcal Electronic energy + Delta-G solvation = -19104.164358 eV Core-core repulsion = 15824.273633 eV Total energy + Delta-G solvation = -3279.890725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00757 -37.80029 -36.76733 -35.98982 -34.93456 -33.50814 -30.17046 -29.86153 -28.74285 -26.45208 -25.40678 -23.13345 -21.99855 -20.59932 -18.15526 -17.00105 -16.70028 -15.99974 -15.46380 -15.12222 -14.72676 -14.38334 -14.10373 -13.84956 -13.28504 -13.03724 -12.72451 -12.28745 -12.07596 -11.78179 -11.55127 -11.29580 -11.20758 -11.15019 -10.97312 -10.74827 -10.67812 -10.36478 -9.76076 -9.63961 -9.48025 -9.24147 -8.75031 -8.31023 -7.52900 -6.50092 -4.57504 1.36145 1.68771 2.28169 3.09031 3.17892 3.21806 3.30123 3.74577 3.95574 4.24306 4.30480 4.86597 5.23609 5.37278 5.48571 5.61174 5.65417 5.71668 5.78020 5.95894 6.09429 6.15757 6.34149 6.46446 6.69996 6.74441 6.87954 7.05855 7.46848 7.67138 7.71575 8.23099 8.59873 9.10552 10.57143 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.005415 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.866795 B = 5169.589237 C = 5604.173331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.050 3.950 4 C -0.021 4.021 5 Cl -0.070 7.070 6 C -0.157 4.157 7 C -0.076 4.076 8 C -0.180 4.180 9 C 0.157 3.843 10 O -0.295 6.295 11 C 0.203 3.797 12 H 0.053 0.947 13 C -0.521 4.521 14 H 0.078 0.922 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.917 3.083 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.036 4.036 22 Cl -0.242 7.242 23 H 0.089 0.911 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.148 0.852 29 H 0.273 0.727 30 H 0.135 0.865 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 1.055 9.906 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.231 6.231 3 C 0.005 3.995 4 C -0.048 4.048 5 Cl -0.041 7.041 6 C -0.176 4.176 7 C -0.095 4.095 8 C -0.199 4.199 9 C 0.108 3.892 10 O -0.207 6.207 11 C 0.148 3.852 12 H 0.070 0.930 13 C -0.559 4.559 14 H 0.096 0.904 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.743 3.257 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.193 1.193 21 C -0.099 4.099 22 Cl -0.216 7.216 23 H 0.107 0.893 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.165 0.835 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.509 0.832 9.908 10.255 hybrid contribution 0.001 -0.066 -0.691 0.694 sum -2.508 0.766 9.218 9.584 Atomic orbital electron populations 1.22937 0.79754 1.02686 1.00409 1.86113 1.19448 1.23554 1.94006 1.17553 1.04174 0.89072 0.88733 1.20905 1.03671 0.94544 0.85673 1.98328 1.92951 1.81493 1.31312 1.20689 1.03631 0.94240 0.99007 1.20840 0.98184 0.99390 0.91038 1.21587 1.02179 0.95855 1.00229 1.19295 0.92504 0.90591 0.86844 1.86244 1.77451 1.44892 1.12104 1.20636 0.92559 0.92123 0.79873 0.92983 1.21014 1.46974 0.94126 0.93747 0.90388 1.24978 0.94305 0.95919 0.98679 1.69786 1.47244 1.12136 1.23480 0.86157 0.78627 0.80491 0.80384 1.20116 1.20721 1.19301 1.25807 1.00281 0.89809 0.93967 1.98644 1.96075 1.63227 1.63635 0.89251 0.94168 0.93266 0.85256 0.85214 0.83453 0.91733 0.84690 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 11.13 101.05 1.13 1.69 16 2 O -0.32 -5.93 9.66 -34.33 -0.33 -6.26 16 3 C 0.05 0.95 5.73 -39.10 -0.22 0.73 16 4 C -0.02 -0.34 6.33 -39.39 -0.25 -0.59 16 5 Cl -0.07 -1.01 28.50 -51.86 -1.48 -2.49 16 6 C -0.16 -2.32 9.82 -39.54 -0.39 -2.70 16 7 C -0.08 -1.17 10.04 -39.58 -0.40 -1.56 16 8 C -0.18 -3.32 7.05 -39.45 -0.28 -3.60 16 9 C 0.16 3.18 5.98 -39.13 -0.23 2.95 16 10 O -0.29 -6.74 9.51 -34.26 -0.33 -7.06 16 11 C 0.20 4.76 2.19 -27.88 -0.06 4.70 16 12 H 0.05 1.28 5.40 -51.93 -0.28 1.00 16 13 C -0.52 -13.27 8.89 -34.44 -0.31 -13.58 16 14 H 0.08 2.03 7.81 -52.49 -0.41 1.62 16 15 C 0.06 1.60 5.29 -17.82 -0.09 1.51 16 16 N -0.89 -22.42 11.30 55.43 0.63 -21.79 16 17 Si 0.92 19.55 29.54 -169.99 -5.02 14.53 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 21 C -0.04 -0.79 6.17 37.16 0.23 -0.56 16 22 Cl -0.24 -4.74 25.61 -51.86 -1.33 -6.07 16 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 27 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.15 2.87 5.10 -52.49 -0.27 2.60 16 29 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.14 3.17 5.96 -51.93 -0.31 2.86 16 31 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -25.80 295.33 -7.22 -33.03 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -2.94 Total: 2.69 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.88 Total: -11.03 kcal Atomic # 7 Polarization: -22.42 SS G_CDS: 0.63 Total: -21.79 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.66 Total: -13.32 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 17 Polarization: -5.75 SS G_CDS: -2.81 Total: -8.55 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -25.80 -7.22 -33.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234638685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.720 kcal (2) G-P(sol) polarization free energy of solvation -25.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds