Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36024 * 116.99670 * 2 1 4 4 C 1.38669 * 120.07060 * 90.00707 * 3 2 1 5 5 Cl 1.73594 * 120.01152 * 0.02562 * 4 3 2 6 6 C 1.38335 * 119.97382 * 179.74053 * 4 3 2 7 7 C 1.38252 * 120.13423 * 0.27496 * 6 4 3 8 8 C 1.38227 * 120.15628 * 359.97438 * 7 6 4 9 9 C 1.38594 * 120.01712 * 0.02562 * 8 7 6 10 10 O 1.36001 * 120.06327 * 179.97438 * 9 8 7 11 11 C 1.42894 * 117.00279 * 356.72902 * 10 9 8 12 12 H 1.09006 * 109.47157 * 26.86145 * 11 10 9 13 13 C 1.50703 * 109.47005 * 146.85615 * 11 10 9 14 14 H 1.07995 * 120.00166 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99865 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99773 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 119.99956 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.46773 * 89.99903 * 17 15 13 19 19 H 1.48499 * 109.47364 * 209.99824 * 17 15 13 20 20 H 1.48503 * 109.47356 * 330.00403 * 17 15 13 21 21 C 1.52998 * 109.47479 * 266.86121 * 11 10 9 22 22 Cl 1.80296 * 109.47213 * 64.99791 * 21 11 10 23 23 H 1.08997 * 109.46668 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46676 * 299.99778 * 1 2 3 25 25 H 1.08997 * 109.47314 * 59.99595 * 1 2 3 26 26 H 1.08007 * 119.92840 * 180.24750 * 6 4 3 27 27 H 1.08004 * 119.91870 * 180.02562 * 7 6 4 28 28 H 1.07996 * 119.99354 * 180.02562 * 8 7 6 29 29 H 0.97000 * 119.99735 * 180.02562 * 16 15 13 30 30 H 1.09003 * 109.46960 * 184.99809 * 21 11 10 31 31 H 1.08995 * 109.47140 * 304.99797 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 2.3621 1.8311 1.2001 5 17 1.9698 1.0592 2.7047 6 6 2.9948 3.0612 1.1977 7 6 3.3086 3.6780 0.0009 8 6 2.9919 3.0683 -1.1985 9 6 2.3580 1.8358 -1.2036 10 8 2.0455 1.2353 -2.3832 11 6 2.3347 1.9631 -3.5784 12 1 3.1619 2.6490 -3.3951 13 6 2.7141 1.0000 -4.6737 14 1 2.7321 -0.0617 -4.4768 15 6 3.0381 1.4744 -5.9271 16 7 3.0166 2.7674 -6.1666 17 14 3.5077 0.2806 -7.2849 18 1 2.2885 -0.1290 -8.0273 19 1 4.4570 0.9399 -8.2173 20 1 4.1508 -0.9183 -6.6895 21 6 1.0982 2.7576 -4.0035 22 17 0.7314 4.0099 -2.7594 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.2439 3.5408 2.1328 27 1 3.8030 4.6383 0.0031 28 1 3.2386 3.5523 -2.1319 29 1 3.2442 3.1010 -7.0485 30 1 1.2891 3.2419 -4.9613 31 1 0.2482 2.0823 -4.1009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234638685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -80.363842 kcal Electronic energy + Delta-G solvation = -19104.711489 eV Core-core repulsion = 15824.273633 eV Total energy + Delta-G solvation = -3280.437856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.43726 -39.31793 -38.08486 -37.27674 -36.59288 -35.35428 -31.80176 -31.22324 -30.24699 -27.71735 -27.28851 -24.66942 -23.34205 -22.21188 -19.63938 -18.75347 -18.15185 -17.51158 -16.93438 -16.61879 -16.27620 -15.86039 -15.52094 -15.41485 -14.70577 -14.61294 -14.06859 -13.88560 -13.70060 -13.15461 -12.98500 -12.92595 -12.84363 -12.60837 -12.51925 -12.21506 -12.08141 -11.92028 -11.44958 -11.21840 -10.97687 -10.92197 -10.57932 -9.62285 -8.99562 -8.39042 -6.54119 0.03520 0.34605 1.01979 1.38919 1.43238 1.53204 1.58242 2.26152 2.44175 2.65466 2.90397 2.96494 4.01347 4.04533 4.14848 4.24554 4.38111 4.41985 4.44152 4.45758 4.51333 4.75220 4.83890 5.10201 5.14517 5.32810 5.39727 5.52147 5.62690 5.82212 6.26092 6.51968 6.80696 7.18230 8.67555 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.005415 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.866795 B = 5169.589237 C = 5604.173331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.336 6.336 3 C 0.037 3.963 4 C -0.028 4.028 5 Cl -0.050 7.050 6 C -0.139 4.139 7 C -0.069 4.069 8 C -0.190 4.190 9 C 0.122 3.878 10 O -0.317 6.317 11 C 0.210 3.790 12 H 0.038 0.962 13 C -0.549 4.549 14 H 0.062 0.938 15 C 0.031 3.969 16 N -0.906 5.906 17 Si 0.975 3.025 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.272 1.272 21 C -0.026 4.026 22 Cl -0.219 7.219 23 H 0.113 0.887 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.132 0.868 29 H 0.277 0.723 30 H 0.120 0.880 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 1.603 11.272 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C -0.008 4.008 4 C -0.055 4.055 5 Cl -0.021 7.021 6 C -0.158 4.158 7 C -0.087 4.087 8 C -0.209 4.209 9 C 0.074 3.926 10 O -0.230 6.230 11 C 0.155 3.845 12 H 0.055 0.945 13 C -0.586 4.586 14 H 0.080 0.920 15 C -0.171 4.171 16 N -0.543 5.543 17 Si 0.798 3.202 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.089 4.089 22 Cl -0.193 7.193 23 H 0.132 0.868 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.184 0.816 27 H 0.183 0.817 28 H 0.149 0.851 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.356 1.392 11.296 11.623 hybrid contribution -0.061 -0.194 -0.928 0.950 sum -2.417 1.198 10.368 10.713 Atomic orbital electron populations 1.23094 0.78198 1.04316 1.00291 1.86060 1.21087 1.23969 1.94117 1.17786 1.04613 0.89231 0.89157 1.21065 1.03540 0.95114 0.85780 1.98333 1.92808 1.81340 1.29608 1.21130 1.01222 0.93160 1.00262 1.21225 0.97143 1.00372 0.89925 1.21570 1.02851 0.95508 1.00967 1.19597 0.94742 0.91923 0.86321 1.86171 1.78492 1.45618 1.12745 1.20364 0.92532 0.91570 0.80047 0.94507 1.21199 1.48388 0.93847 0.95181 0.91958 1.25651 0.93856 0.97366 1.00202 1.69859 1.47191 1.13211 1.24069 0.85286 0.78554 0.78452 0.77873 1.19358 1.19903 1.19680 1.25413 0.99651 0.90078 0.93716 1.98633 1.95914 1.62115 1.62679 0.86846 0.92736 0.94829 0.81560 0.81745 0.85060 0.91363 0.86245 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.13 113.37 1.26 2.31 16 2 O -0.34 -12.58 9.66 -79.94 -0.77 -13.35 16 3 C 0.04 1.40 5.73 22.58 0.13 1.53 16 4 C -0.03 -0.86 6.33 22.40 0.14 -0.72 16 5 Cl -0.05 -1.32 28.50 -2.72 -0.08 -1.40 16 6 C -0.14 -3.65 9.82 22.30 0.22 -3.43 16 7 C -0.07 -1.93 10.04 22.27 0.22 -1.70 16 8 C -0.19 -6.97 7.05 22.35 0.16 -6.81 16 9 C 0.12 5.01 5.98 22.56 0.14 5.14 16 10 O -0.32 -15.04 9.51 -79.68 -0.76 -15.80 16 11 C 0.21 10.23 2.19 29.85 0.07 10.30 16 12 H 0.04 1.90 5.40 -2.38 -0.01 1.88 16 13 C -0.55 -28.91 8.89 25.60 0.23 -28.68 16 14 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 15 C 0.03 1.55 5.29 84.66 0.45 2.00 16 16 N -0.91 -46.23 11.30 21.45 0.24 -45.98 16 17 Si 0.97 40.25 29.54 68.60 2.03 42.28 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 C -0.03 -1.15 6.17 71.98 0.44 -0.71 16 22 Cl -0.22 -8.60 25.61 -2.72 -0.07 -8.67 16 23 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 27 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 28 H 0.13 5.22 5.10 -2.91 -0.01 5.20 16 29 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 30 H 0.12 5.76 5.96 -2.39 -0.01 5.75 16 31 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -56.04 295.33 5.21 -50.84 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.16 Total: 12.87 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.45 Total: -20.77 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.24 Total: -45.98 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.53 Total: -29.15 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 17 Polarization: -9.92 SS G_CDS: -0.15 Total: -10.07 kcal Total: -56.04 5.21 -50.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234638685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.527 kcal (2) G-P(sol) polarization free energy of solvation -56.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds