Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86797 * 119.99754 * 2 1 4 4 H 1.48497 * 109.47066 * 239.99458 * 3 2 1 5 5 H 1.48500 * 109.47452 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46885 * 119.99913 * 3 2 1 7 7 C 1.38644 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00143 * 180.02562 * 7 2 1 9 9 O 1.34822 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.35658 * 117.00062 * 185.06586 * 9 7 2 11 11 C 1.38765 * 120.13460 * 354.39767 * 10 9 7 12 12 C 1.38105 * 120.04888 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32402 * 359.97438 * 12 11 10 14 14 C 1.38015 * 120.27385 * 0.02562 * 13 12 11 15 15 C 1.39289 * 119.94274 * 359.97438 * 14 13 12 16 16 C 1.48293 * 120.16080 * 180.02562 * 15 14 13 17 17 C 1.39334 * 120.08668 * 309.70612 * 16 15 14 18 18 C 1.38507 * 119.83586 * 179.70202 * 17 16 15 19 19 O 1.35903 * 119.98105 * 180.27254 * 18 17 16 20 20 C 1.38822 * 120.02728 * 0.57074 * 18 17 16 21 21 C 1.38332 * 120.18399 * 359.72428 * 20 18 17 22 22 Cl 1.73606 * 119.91761 * 179.97438 * 21 20 18 23 23 C 1.38171 * 120.16268 * 359.97438 * 21 20 18 24 24 H 0.96997 * 119.99720 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.97757 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.84404 * 179.71922 * 12 11 10 27 27 H 1.08007 * 119.86489 * 179.97438 * 13 12 11 28 28 H 1.07997 * 120.02939 * 179.97438 * 14 13 12 29 29 H 1.07997 * 120.08338 * 359.97237 * 17 16 15 30 30 H 0.96699 * 114.00251 * 270.29149 * 19 18 17 31 31 H 1.07998 * 119.90337 * 179.74719 * 20 18 17 32 32 H 1.08001 * 120.01554 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3683 -0.0016 10 6 2.0695 -3.5037 0.1047 11 6 3.4556 -3.4404 0.0912 12 6 4.2019 -4.5975 0.1990 13 6 3.5740 -5.8253 0.3214 14 6 2.1962 -5.9038 0.3362 15 6 1.4325 -4.7439 0.2283 16 6 -0.0482 -4.8226 0.2443 17 6 -0.7095 -5.7145 -0.5975 18 6 -2.0924 -5.7881 -0.5739 19 8 -2.7401 -6.6609 -1.3897 20 6 -2.8173 -4.9663 0.2783 21 6 -2.1622 -4.0760 1.1101 22 17 -3.0756 -3.0511 2.1726 23 6 -0.7826 -4.0006 1.0973 24 1 -0.4849 0.8400 -0.0004 25 1 3.9513 -2.4856 -0.0044 26 1 5.2804 -4.5448 0.1836 27 1 4.1649 -6.7255 0.4047 28 1 1.7105 -6.8637 0.4314 29 1 -0.1449 -6.3500 -1.2637 30 1 -2.9673 -6.2954 -2.2557 31 1 -3.8957 -5.0224 0.2922 32 1 -0.2735 -3.3050 1.7480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235904113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = -46.940787 kcal Electronic energy + Delta-G solvation = -19971.179252 eV Core-core repulsion = 16694.623578 eV Total energy + Delta-G solvation = -3276.555674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21081 -40.25371 -38.20406 -37.94606 -37.00949 -34.27403 -33.31780 -30.88865 -30.70784 -29.65727 -27.31156 -24.58958 -23.80360 -22.85062 -22.08958 -19.79378 -19.53348 -18.38259 -17.52783 -17.01718 -16.70910 -16.37562 -16.09735 -15.82963 -15.55290 -15.23441 -15.13720 -14.47010 -14.23950 -14.08540 -13.53643 -13.41621 -13.15713 -12.85118 -12.53725 -12.47602 -12.39970 -12.21444 -12.06162 -11.93400 -11.66235 -11.14675 -10.77363 -10.21245 -9.61830 -9.40707 -8.84887 -8.42295 -6.09406 -0.08662 0.14761 0.68133 0.79022 1.10940 1.35378 1.44926 1.49757 2.17480 2.48027 2.86008 3.14653 3.31334 3.48142 3.68852 4.04277 4.10702 4.19963 4.27639 4.28864 4.52908 4.57546 4.73497 4.76911 5.04143 5.13486 5.16924 5.18253 5.32850 5.40716 5.55500 5.70701 5.75792 5.77045 6.03875 6.22515 6.79809 7.01134 7.79843 8.77444 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.007060 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.540756 B = 3965.235483 C = 5750.783947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.013 4.013 3 Si 1.008 2.992 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.418 4.418 8 H 0.099 0.901 9 O -0.207 6.207 10 C 0.129 3.871 11 C -0.250 4.250 12 C -0.064 4.064 13 C -0.193 4.193 14 C -0.055 4.055 15 C -0.151 4.151 16 C 0.002 3.998 17 C -0.137 4.137 18 C 0.125 3.875 19 O -0.494 6.494 20 C -0.148 4.148 21 C -0.021 4.021 22 Cl -0.071 7.071 23 C -0.103 4.103 24 H 0.270 0.730 25 H 0.120 0.880 26 H 0.145 0.855 27 H 0.153 0.847 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.413 0.587 31 H 0.156 0.844 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -10.499 -1.054 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.212 4.212 3 Si 0.829 3.171 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.116 0.884 9 O -0.112 6.112 10 C 0.077 3.923 11 C -0.269 4.269 12 C -0.082 4.082 13 C -0.211 4.211 14 C -0.073 4.073 15 C -0.153 4.153 16 C 0.001 3.999 17 C -0.155 4.155 18 C 0.080 3.920 19 O -0.307 6.307 20 C -0.167 4.167 21 C -0.048 4.048 22 Cl -0.042 7.042 23 C -0.122 4.122 24 H 0.079 0.921 25 H 0.138 0.862 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.272 0.728 31 H 0.173 0.827 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.629 -10.594 -0.522 10.625 hybrid contribution 0.142 1.755 -0.175 1.769 sum -0.487 -8.839 -0.697 8.880 Atomic orbital electron populations 1.70187 1.07557 1.28495 1.47664 1.26377 0.96735 1.02149 0.95947 0.84789 0.77521 0.75110 0.79728 1.18352 1.19920 1.18516 1.21720 0.92412 0.81579 1.53675 0.88394 1.83965 1.35141 1.11967 1.80138 1.19880 0.91348 0.87529 0.93551 1.21284 0.92963 1.00423 1.12268 1.21267 1.00389 0.91483 0.95071 1.21113 0.94016 0.98221 1.07735 1.21157 0.94104 0.96069 0.95983 1.18128 0.91367 0.91580 1.14181 1.18469 0.92265 0.94714 0.94421 1.21678 0.94024 0.99667 1.00136 1.17960 0.89454 0.90691 0.93931 1.84748 1.77320 1.38172 1.30460 1.21373 1.01627 0.95845 0.97838 1.20631 0.91450 0.95950 0.96732 1.98340 1.73849 1.67460 1.64574 1.21011 0.92271 0.98821 1.00061 0.92101 0.86207 0.83686 0.82886 0.83552 0.83083 0.72772 0.82667 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.57 13.67 21.61 0.30 -53.27 16 2 C -0.01 -0.70 5.49 84.83 0.47 -0.23 16 3 Si 1.01 42.22 29.55 68.60 2.03 44.24 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.42 -23.46 9.49 67.92 0.64 -22.82 16 8 H 0.10 5.08 5.21 -2.91 -0.02 5.06 16 9 O -0.21 -11.75 8.11 -21.65 -0.18 -11.93 16 10 C 0.13 6.13 6.56 22.81 0.15 6.28 16 11 C -0.25 -10.44 9.16 22.36 0.20 -10.23 16 12 C -0.06 -2.06 10.03 22.29 0.22 -1.84 16 13 C -0.19 -5.52 10.03 22.27 0.22 -5.30 16 14 C -0.06 -1.77 9.51 22.47 0.21 -1.55 16 15 C -0.15 -6.17 5.49 -19.93 -0.11 -6.28 16 16 C 0.00 0.07 5.27 -20.06 -0.11 -0.03 16 17 C -0.14 -4.45 9.46 22.60 0.21 -4.23 16 18 C 0.12 3.69 6.70 22.47 0.15 3.84 16 19 O -0.49 -11.32 13.50 -92.46 -1.25 -12.57 16 20 C -0.15 -4.68 9.76 22.43 0.22 -4.46 16 21 C -0.02 -0.80 6.31 22.28 0.14 -0.66 16 22 Cl -0.07 -2.58 28.95 -2.72 -0.08 -2.66 16 23 C -0.10 -4.45 8.56 22.53 0.19 -4.25 16 24 H 0.27 14.95 8.31 -92.71 -0.77 14.17 16 25 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 26 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.15 3.73 8.04 -2.91 -0.02 3.71 16 29 H 0.15 4.18 8.05 -2.91 -0.02 4.15 16 30 H 0.41 5.51 9.06 -74.06 -0.67 4.83 16 31 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.10 5.11 7.68 -2.91 -0.02 5.09 16 Total: -1.00 -68.89 303.08 4.15 -64.74 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.51 Total: 23.20 kcal Atomic # 6 Polarization: -54.59 SS G_CDS: 2.83 Total: -51.76 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.30 Total: -53.27 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.42 Total: -24.49 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.08 Total: -2.66 kcal Total: -68.89 4.15 -64.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235904113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.798 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds