Wall clock time and date at job start Tue Mar 31 2020 06:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99660 * 2 1 4 4 H 1.48504 * 109.46884 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47588 * 300.00405 * 3 2 1 6 6 H 1.48495 * 109.47043 * 60.00660 * 3 2 1 7 7 C 1.37872 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00097 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47426 * 180.02562 * 9 7 2 11 11 C 1.38340 * 119.93868 * 270.25769 * 10 9 7 12 12 C 1.38303 * 120.24464 * 180.25976 * 11 10 9 13 13 C 1.38039 * 120.12210 * 359.47938 * 12 11 10 14 14 C 1.39327 * 119.87568 * 0.26028 * 13 12 11 15 15 C 1.48369 * 120.12450 * 180.02562 * 14 13 12 16 16 C 1.39353 * 120.12740 * 310.00256 * 15 14 13 17 17 C 1.37992 * 119.92540 * 179.97438 * 16 15 14 18 18 C 1.38353 * 120.18857 * 0.02562 * 17 16 15 19 19 C 1.38357 * 120.25359 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 119.96217 * 179.97438 * 19 18 17 21 21 C 1.38391 * 120.07100 * 359.74826 * 19 18 17 22 22 F 1.35103 * 120.09544 * 180.27909 * 21 19 18 23 23 C 1.37996 * 119.93476 * 89.99678 * 10 9 7 24 24 H 0.97002 * 120.00268 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46743 * 59.99861 * 9 7 2 26 26 H 1.09002 * 109.46365 * 300.00529 * 9 7 2 27 27 H 1.08003 * 119.88232 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.94274 * 179.76597 * 12 11 10 29 29 H 1.07999 * 120.06299 * 180.27833 * 13 12 11 30 30 H 1.07999 * 120.03184 * 359.95630 * 16 15 14 31 31 H 1.07998 * 119.90853 * 180.02562 * 17 16 15 32 32 H 1.07989 * 119.87296 * 179.97438 * 18 17 16 33 33 H 1.07993 * 120.06353 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6832 -4.1658 -1.1993 12 6 3.5779 -5.2205 -1.2067 13 6 4.0323 -5.7518 -0.0165 14 6 3.5837 -5.2272 1.1938 15 6 4.0689 -5.7937 2.4764 16 6 4.0316 -7.1700 2.6917 17 6 4.4844 -7.6925 3.8859 18 6 4.9751 -6.8537 4.8707 19 6 5.0157 -5.4861 4.6650 20 17 5.6323 -4.4406 5.9061 21 6 4.5696 -4.9512 3.4691 22 9 4.6143 -3.6164 3.2655 23 6 2.6780 -4.1679 1.1953 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.3339 -3.7501 -2.1330 28 1 3.9253 -5.6261 -2.1455 29 1 4.7343 -6.5724 -0.0234 30 1 3.6484 -7.8269 1.9249 31 1 4.4557 -8.7592 4.0524 32 1 5.3278 -7.2680 5.8035 33 1 2.3275 -3.7572 2.1306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238957061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:54 Heat of formation + Delta-G solvation = -16.239734 kcal Electronic energy + Delta-G solvation = -19485.670663 eV Core-core repulsion = 16222.819077 eV Total energy + Delta-G solvation = -3262.851587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.79122 -39.55170 -38.27201 -36.62617 -33.67283 -32.41760 -31.14403 -30.56047 -28.90957 -27.03220 -23.73642 -23.34221 -22.71918 -21.32113 -19.99307 -17.74547 -16.60409 -16.52892 -16.25466 -15.81885 -15.62275 -14.74550 -14.59645 -14.43610 -14.24137 -13.34547 -13.13651 -13.07308 -12.66927 -12.51909 -12.30475 -11.86615 -11.67052 -11.54248 -11.31339 -11.17809 -11.05996 -10.76414 -10.50566 -10.32968 -9.58637 -9.51082 -9.20019 -8.81996 -8.42798 -8.13447 -7.84771 -6.04713 -4.08270 0.73767 0.87128 1.82698 1.97797 2.03791 3.30498 3.31186 3.38156 3.44127 4.00810 4.31680 4.48855 4.49527 4.69563 4.84504 4.96714 5.29863 5.31042 5.44589 5.48509 5.69156 5.75340 5.88335 5.97488 6.01466 6.06242 6.22403 6.44773 6.57240 6.66196 6.93400 7.07604 7.11273 7.46561 7.62094 7.79096 7.91439 8.30375 8.97099 9.55959 11.05355 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.004829 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.447354 B = 5796.557646 C = 7129.935721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.033 4.033 11 C -0.112 4.112 12 C -0.124 4.124 13 C -0.127 4.127 14 C -0.071 4.071 15 C -0.049 4.049 16 C -0.079 4.079 17 C -0.120 4.120 18 C -0.092 4.092 19 C -0.074 4.074 20 Cl -0.053 7.053 21 C 0.120 3.880 22 F -0.113 7.113 23 C -0.095 4.095 24 H 0.262 0.738 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 -16.616 7.109 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.033 4.033 11 C -0.130 4.130 12 C -0.142 4.142 13 C -0.145 4.145 14 C -0.071 4.071 15 C -0.050 4.050 16 C -0.098 4.098 17 C -0.138 4.138 18 C -0.110 4.110 19 C -0.102 4.102 20 Cl -0.024 7.024 21 C 0.099 3.901 22 F -0.091 7.091 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.403 -16.337 7.216 20.184 hybrid contribution 0.531 1.368 0.139 1.474 sum 9.933 -14.969 7.354 19.412 Atomic orbital electron populations 1.69963 1.06031 1.26737 1.50602 1.24993 0.94868 0.99254 0.95110 0.86494 0.80249 0.83476 0.77637 1.19600 1.20919 1.20880 1.21087 0.93120 0.89773 1.50907 0.92370 1.18381 0.92528 0.89580 0.98492 1.20650 0.96110 0.94943 0.91574 1.21226 0.97429 0.95883 0.98470 1.20964 0.98539 0.97533 0.97203 1.20835 1.01261 1.00859 0.91513 1.18438 0.99815 0.98316 0.90575 1.18937 0.99509 0.93036 0.93565 1.21262 0.97699 0.93206 0.97586 1.21074 0.99425 1.00212 0.93100 1.20954 0.99536 0.90087 1.00451 1.20937 1.05949 0.92641 0.90664 1.98386 1.85771 1.66436 1.51855 1.17531 1.00772 0.78644 0.93104 1.91620 1.93689 1.28881 1.94923 1.21122 0.96817 0.94597 0.98782 0.92884 0.95136 0.95267 0.86132 0.86601 0.86838 0.84251 0.84399 0.84210 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.47 9.09 -34.44 -0.31 -14.78 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.05 1.21 5.10 -29.04 -0.15 1.06 16 10 C -0.03 -0.71 5.06 -104.67 -0.53 -1.24 16 11 C -0.11 -2.13 9.69 -39.52 -0.38 -2.51 16 12 C -0.12 -1.97 10.03 -39.63 -0.40 -2.37 16 13 C -0.13 -1.93 9.51 -39.25 -0.37 -2.30 16 14 C -0.07 -1.21 5.31 -104.90 -0.56 -1.77 16 15 C -0.05 -0.72 5.48 -104.84 -0.57 -1.29 16 16 C -0.08 -0.87 9.51 -39.26 -0.37 -1.24 16 17 C -0.12 -1.06 10.03 -39.63 -0.40 -1.46 16 18 C -0.09 -0.90 9.82 -39.50 -0.39 -1.29 16 19 C -0.07 -0.96 6.32 -39.48 -0.25 -1.21 16 20 Cl -0.05 -0.68 28.61 -51.86 -1.48 -2.16 16 21 C 0.12 1.85 7.14 -39.05 -0.28 1.57 16 22 F -0.11 -2.08 15.49 2.25 0.03 -2.04 16 23 C -0.10 -1.91 8.52 -39.25 -0.33 -2.25 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 26 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.12 2.21 8.06 -52.48 -0.42 1.78 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.39 8.04 -52.49 -0.42 0.97 16 30 H 0.14 1.25 8.04 -52.49 -0.42 0.83 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 2.46 7.81 -52.49 -0.41 2.05 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -30.63 312.67 -9.74 -40.37 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.33 Total: -2.44 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -5.40 Total: -29.49 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.03 Total: -2.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.63 -9.74 -40.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238957061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.129 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds