Wall clock time and date at job start Tue Mar 31 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99660 * 2 1 4 4 H 1.48504 * 109.46884 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47588 * 300.00405 * 3 2 1 6 6 H 1.48495 * 109.47043 * 60.00660 * 3 2 1 7 7 C 1.37872 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00097 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47426 * 180.02562 * 9 7 2 11 11 C 1.38340 * 119.93868 * 270.25769 * 10 9 7 12 12 C 1.38303 * 120.24464 * 180.25976 * 11 10 9 13 13 C 1.38039 * 120.12210 * 359.47938 * 12 11 10 14 14 C 1.39327 * 119.87568 * 0.26028 * 13 12 11 15 15 C 1.48369 * 120.12450 * 180.02562 * 14 13 12 16 16 C 1.39353 * 120.12740 * 310.00256 * 15 14 13 17 17 C 1.37992 * 119.92540 * 179.97438 * 16 15 14 18 18 C 1.38353 * 120.18857 * 0.02562 * 17 16 15 19 19 C 1.38357 * 120.25359 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 119.96217 * 179.97438 * 19 18 17 21 21 C 1.38391 * 120.07100 * 359.74826 * 19 18 17 22 22 F 1.35103 * 120.09544 * 180.27909 * 21 19 18 23 23 C 1.37996 * 119.93476 * 89.99678 * 10 9 7 24 24 H 0.97002 * 120.00268 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46743 * 59.99861 * 9 7 2 26 26 H 1.09002 * 109.46365 * 300.00529 * 9 7 2 27 27 H 1.08003 * 119.88232 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.94274 * 179.76597 * 12 11 10 29 29 H 1.07999 * 120.06299 * 180.27833 * 13 12 11 30 30 H 1.07999 * 120.03184 * 359.95630 * 16 15 14 31 31 H 1.07998 * 119.90853 * 180.02562 * 17 16 15 32 32 H 1.07989 * 119.87296 * 179.97438 * 18 17 16 33 33 H 1.07993 * 120.06353 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6832 -4.1658 -1.1993 12 6 3.5779 -5.2205 -1.2067 13 6 4.0323 -5.7518 -0.0165 14 6 3.5837 -5.2272 1.1938 15 6 4.0689 -5.7937 2.4764 16 6 4.0316 -7.1700 2.6917 17 6 4.4844 -7.6925 3.8859 18 6 4.9751 -6.8537 4.8707 19 6 5.0157 -5.4861 4.6650 20 17 5.6323 -4.4406 5.9061 21 6 4.5696 -4.9512 3.4691 22 9 4.6143 -3.6164 3.2655 23 6 2.6780 -4.1679 1.1953 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.3339 -3.7501 -2.1330 28 1 3.9253 -5.6261 -2.1455 29 1 4.7343 -6.5724 -0.0234 30 1 3.6484 -7.8269 1.9249 31 1 4.4557 -8.7592 4.0524 32 1 5.3278 -7.2680 5.8035 33 1 2.3275 -3.7572 2.1306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238957061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:53 Heat of formation + Delta-G solvation = -31.123650 kcal Electronic energy + Delta-G solvation = -19486.316078 eV Core-core repulsion = 16222.819077 eV Total energy + Delta-G solvation = -3263.497002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.01361 -40.67791 -39.47540 -37.59878 -35.58706 -33.83155 -32.75594 -31.47909 -30.13692 -28.88499 -25.37795 -24.68895 -23.80760 -22.59705 -21.41747 -18.81529 -18.55663 -17.67194 -17.59829 -17.04996 -16.82505 -16.57388 -15.90938 -15.60316 -15.45097 -14.60551 -14.44250 -14.35785 -14.16553 -14.06321 -13.52277 -13.37234 -13.13449 -12.91622 -12.71778 -12.52777 -12.48189 -12.36469 -12.17647 -11.73908 -11.59124 -11.40067 -10.65759 -10.31581 -9.76180 -9.56914 -9.23187 -8.25384 -6.38430 -0.25696 -0.05174 0.59739 0.63180 0.95747 1.34299 1.35347 1.48962 2.34860 2.42411 2.92699 3.05294 3.08421 3.42149 3.89139 3.92426 4.11317 4.16968 4.22079 4.33619 4.46887 4.62390 4.70566 4.83634 4.91466 5.02613 5.15744 5.18198 5.24663 5.30753 5.34770 5.56900 5.58624 5.68676 5.73798 6.02325 6.07002 6.20583 6.73624 7.30195 8.84430 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.004829 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.447354 B = 5796.557646 C = 7129.935721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.049 0.951 9 C 0.057 3.943 10 C -0.066 4.066 11 C -0.128 4.128 12 C -0.110 4.110 13 C -0.113 4.113 14 C -0.064 4.064 15 C -0.074 4.074 16 C -0.070 4.070 17 C -0.098 4.098 18 C -0.079 4.079 19 C -0.085 4.085 20 Cl -0.061 7.061 21 C 0.081 3.919 22 F -0.145 7.145 23 C -0.117 4.117 24 H 0.267 0.733 25 H 0.009 0.991 26 H -0.003 1.003 27 H 0.118 0.882 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.186 0.814 32 H 0.172 0.828 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.802 -19.860 7.257 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.067 0.933 9 C 0.020 3.980 10 C -0.066 4.066 11 C -0.146 4.146 12 C -0.127 4.127 13 C -0.130 4.130 14 C -0.064 4.064 15 C -0.076 4.076 16 C -0.088 4.088 17 C -0.116 4.116 18 C -0.098 4.098 19 C -0.113 4.113 20 Cl -0.032 7.032 21 C 0.061 3.939 22 F -0.124 7.124 23 C -0.135 4.135 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.015 0.985 27 H 0.136 0.864 28 H 0.176 0.824 29 H 0.177 0.823 30 H 0.185 0.815 31 H 0.204 0.796 32 H 0.190 0.810 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.712 -19.591 7.363 23.983 hybrid contribution -0.156 2.193 0.178 2.206 sum 11.556 -17.398 7.541 22.206 Atomic orbital electron populations 1.70075 1.07558 1.27947 1.51263 1.25892 0.95785 1.02997 0.94474 0.85431 0.78806 0.78852 0.78218 1.19310 1.19474 1.20148 1.21365 0.92869 0.91394 1.51043 0.93259 1.18096 0.92911 0.91237 0.95762 1.20316 0.97331 0.95224 0.93741 1.21282 0.98850 0.97439 0.97078 1.21372 0.96387 0.95539 0.99435 1.21352 1.00450 1.01019 0.90192 1.18671 0.98026 0.96730 0.92985 1.18980 1.01335 0.94691 0.92544 1.21620 0.96546 0.91455 0.99150 1.21612 0.96412 1.02275 0.91281 1.21454 0.97826 0.88549 1.01941 1.21155 1.06445 0.93888 0.89801 1.98379 1.85848 1.67131 1.51806 1.17981 1.03378 0.77622 0.94930 1.91530 1.94282 1.31265 1.95283 1.20954 0.98887 0.96716 0.96990 0.92453 0.97266 0.98471 0.86359 0.82376 0.82309 0.81548 0.79632 0.81012 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.96 46.27 29.54 68.60 2.03 48.30 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.53 -31.83 9.09 25.60 0.23 -31.60 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.06 3.20 5.10 29.10 0.15 3.35 16 10 C -0.07 -3.07 5.06 -19.90 -0.10 -3.17 16 11 C -0.13 -4.97 9.69 22.31 0.22 -4.76 16 12 C -0.11 -3.20 10.03 22.24 0.22 -2.97 16 13 C -0.11 -3.07 9.51 22.48 0.21 -2.86 16 14 C -0.06 -2.14 5.31 -20.04 -0.11 -2.24 16 15 C -0.07 -2.07 5.48 -20.01 -0.11 -2.18 16 16 C -0.07 -1.23 9.51 22.48 0.21 -1.01 16 17 C -0.10 -1.20 10.03 22.24 0.22 -0.97 16 18 C -0.08 -1.25 9.82 22.33 0.22 -1.03 16 19 C -0.09 -2.10 6.32 22.33 0.14 -1.96 16 20 Cl -0.06 -1.51 28.61 -2.72 -0.08 -1.59 16 21 C 0.08 2.52 7.14 22.61 0.16 2.68 16 22 F -0.15 -5.71 15.49 44.97 0.70 -5.01 16 23 C -0.12 -5.02 8.52 22.49 0.19 -4.83 16 24 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 26 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 27 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 28 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.16 2.95 8.04 -2.91 -0.02 2.93 16 30 H 0.17 2.01 8.04 -2.91 -0.02 1.99 16 31 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 32 H 0.17 1.61 8.06 -2.92 -0.02 1.58 16 33 H 0.09 4.26 7.81 -2.91 -0.02 4.24 16 Total: -1.00 -73.51 312.67 6.39 -67.12 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: 1.13 Total: 1.18 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 2.33 Total: -52.69 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.28 Total: -57.31 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.70 Total: -5.01 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -73.51 6.39 -67.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238957061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.000 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds