Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35849 * 117.00190 * 2 1 4 4 C 1.38866 * 119.93427 * 359.97438 * 3 2 1 5 5 C 1.37846 * 120.08594 * 179.97438 * 4 3 2 6 6 C 1.39486 * 119.94857 * 0.02562 * 5 4 3 7 7 C 1.48210 * 120.06389 * 180.02562 * 6 5 4 8 8 C 1.40098 * 119.99623 * 5.00511 * 7 6 5 9 9 N 1.32154 * 120.29696 * 180.29595 * 8 7 6 10 10 C 1.31904 * 120.28434 * 359.44291 * 9 8 7 11 11 C 1.40812 * 119.97566 * 0.55653 * 10 9 8 12 12 C 1.41324 * 120.14115 * 179.70057 * 11 10 9 13 13 H 1.07992 * 119.99975 * 155.20022 * 12 11 10 14 14 C 1.40043 * 119.99940 * 335.20376 * 12 11 10 15 15 N 1.30744 * 119.99912 * 342.16208 * 14 12 11 16 16 Si 1.86795 * 120.00044 * 162.16530 * 14 12 11 17 17 H 1.48503 * 109.47125 * 94.66067 * 16 14 12 18 18 H 1.48495 * 109.47247 * 214.65744 * 16 14 12 19 19 H 1.48501 * 109.47104 * 334.66137 * 16 14 12 20 20 N 1.32560 * 119.99147 * 185.02313 * 7 6 5 21 21 C 1.39451 * 119.86905 * 0.28127 * 6 5 4 22 22 C 1.37964 * 119.91652 * 359.44393 * 21 6 5 23 23 Cl 1.73591 * 119.97823 * 180.25514 * 22 21 6 24 24 H 1.09004 * 109.47383 * 300.00789 * 1 2 3 25 25 H 1.09003 * 109.46462 * 60.00214 * 1 2 3 26 26 H 1.08993 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.95644 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.02617 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.85065 * 0.02562 * 8 7 6 30 30 H 1.08000 * 120.00800 * 180.28039 * 10 9 8 31 31 H 0.96993 * 119.99696 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.04395 * 179.72576 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.2882 2.3742 -0.0005 5 6 1.9108 3.6040 0.0000 6 6 3.3036 3.6794 0.0005 7 6 3.9757 5.0004 0.0017 8 6 3.2160 6.1727 0.1081 9 7 3.8086 7.3539 0.1038 10 6 5.1215 7.4390 0.0104 11 6 5.8966 6.2683 -0.0971 12 6 7.3031 6.3557 -0.2038 13 1 7.9208 5.5268 0.1084 14 6 7.8957 7.5174 -0.7143 15 7 7.1810 8.3662 -1.4057 16 14 9.7073 7.8539 -0.4076 17 1 10.5046 7.3585 -1.5584 18 1 9.9197 9.3152 -0.2508 19 1 10.1379 7.1554 0.8301 20 7 5.2955 5.0724 -0.0983 21 6 4.0625 2.5095 -0.0054 22 6 3.4337 1.2815 -0.0002 23 17 4.3768 -0.1759 -0.0009 24 1 -0.3634 0.5140 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 0.2097 2.3156 -0.0005 28 1 1.3206 4.5085 0.0000 29 1 2.1408 6.1109 0.1895 30 1 5.6015 8.4065 0.0119 31 1 7.5916 9.1706 -1.7596 32 1 5.1410 2.5646 -0.0095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240029737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -4.371323 kcal Electronic energy + Delta-G solvation = -19387.609523 eV Core-core repulsion = 16145.192551 eV Total energy + Delta-G solvation = -3242.416972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43811 -40.74333 -38.52984 -37.41586 -36.04016 -34.54987 -32.85774 -31.96203 -30.19448 -28.49626 -27.67578 -24.94214 -24.50432 -23.02666 -22.40817 -19.67246 -19.20877 -18.10030 -17.44732 -17.26077 -16.83906 -16.74493 -16.58603 -15.61922 -15.17380 -15.05996 -14.95998 -14.66060 -14.18979 -13.70375 -13.42063 -13.18557 -13.03980 -12.80882 -12.72881 -12.59806 -12.21106 -12.07930 -12.03758 -11.88886 -11.76829 -11.62995 -11.10026 -10.10830 -9.88146 -9.38926 -8.90484 -8.83246 -6.70375 -0.27160 0.13123 0.71062 1.05704 1.13758 1.39906 1.49527 1.57941 2.16516 2.23083 2.47314 2.72484 3.40492 3.68442 3.73536 3.87097 4.05129 4.15285 4.27758 4.41218 4.45690 4.47431 4.60140 4.74328 4.79930 4.83223 4.98118 5.07552 5.12370 5.31642 5.48594 5.56364 5.68721 6.13768 6.27199 6.48472 6.53170 7.17273 7.65328 8.12325 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.003965 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.183401 B = 7059.790985 C = 8130.271307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.142 3.858 4 C -0.186 4.186 5 C -0.049 4.049 6 C -0.075 4.075 7 C 0.135 3.865 8 C -0.096 4.096 9 N -0.450 5.450 10 C -0.021 4.021 11 C 0.203 3.797 12 C -0.454 4.454 13 H 0.086 0.914 14 C 0.041 3.959 15 N -0.808 5.808 16 Si 1.001 2.999 17 H -0.260 1.260 18 H -0.257 1.257 19 H -0.257 1.257 20 N -0.547 5.547 21 C -0.049 4.049 22 C -0.087 4.087 23 Cl -0.063 7.063 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.121 0.879 27 H 0.181 0.819 28 H 0.159 0.841 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.301 0.699 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 -11.091 1.847 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.095 3.905 4 C -0.204 4.204 5 C -0.068 4.068 6 C -0.077 4.077 7 C -0.009 4.009 8 C -0.253 4.253 9 N -0.162 5.162 10 C -0.190 4.190 11 C 0.076 3.924 12 C -0.487 4.487 13 H 0.104 0.896 14 C -0.178 4.178 15 N -0.433 5.433 16 Si 0.820 3.180 17 H -0.184 1.184 18 H -0.181 1.181 19 H -0.180 1.180 20 N -0.266 5.266 21 C -0.069 4.069 22 C -0.114 4.114 23 Cl -0.034 7.034 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.139 0.861 27 H 0.198 0.802 28 H 0.177 0.823 29 H 0.189 0.811 30 H 0.167 0.833 31 H 0.113 0.887 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.425 -11.197 1.703 15.394 hybrid contribution 0.896 0.380 -0.129 0.981 sum -9.530 -10.818 1.574 14.502 Atomic orbital electron populations 1.23500 0.75593 1.06046 1.02984 1.86130 1.24111 1.25274 1.87797 1.18846 0.89824 0.86266 0.95557 1.21420 1.01860 0.89680 1.07436 1.21384 0.91977 0.99315 0.94150 1.18495 0.93782 0.89779 1.05686 1.20858 0.91007 0.93803 0.95204 1.23236 1.00896 0.87728 1.13445 1.67856 1.11878 1.27990 1.08490 1.23639 0.89244 1.00129 1.05959 1.19619 0.95764 0.87797 0.89242 1.19640 0.90175 1.01939 1.36899 0.89590 1.26968 1.06590 0.93478 0.90811 1.69752 1.41326 1.10222 1.21999 0.84907 0.74011 0.79037 0.80081 1.18406 1.18055 1.18020 1.68945 1.09543 1.27702 1.20452 1.20951 1.00746 0.89507 0.95706 1.20101 0.89635 0.88035 1.13629 1.98332 1.72329 1.35448 1.97275 0.90875 0.90973 0.86091 0.80166 0.82340 0.81114 0.83271 0.88739 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.26 16 2 O -0.32 -7.11 9.94 -91.85 -0.91 -8.02 16 3 C 0.14 3.73 6.69 22.60 0.15 3.88 16 4 C -0.19 -4.08 9.02 22.33 0.20 -3.88 16 5 C -0.05 -1.35 9.41 22.48 0.21 -1.14 16 6 C -0.08 -2.82 5.88 -20.03 -0.12 -2.93 16 7 C 0.14 6.30 6.73 42.14 0.28 6.58 16 8 C -0.10 -4.32 10.61 85.10 0.90 -3.42 16 9 N -0.45 -23.09 10.47 -192.01 -2.01 -25.10 16 10 C -0.02 -1.15 9.88 85.31 0.84 -0.31 16 11 C 0.20 11.42 6.41 40.23 0.26 11.68 16 12 C -0.45 -24.40 9.29 23.47 0.22 -24.19 16 13 H 0.09 4.54 7.91 -2.91 -0.02 4.52 16 14 C 0.04 1.96 5.13 85.29 0.44 2.39 16 15 N -0.81 -40.16 10.97 21.84 0.24 -39.92 16 16 Si 1.00 35.94 29.60 68.60 2.03 37.97 16 17 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 18 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 19 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 20 N -0.55 -29.34 9.56 -177.67 -1.70 -31.03 16 21 C -0.05 -1.83 9.35 22.50 0.21 -1.62 16 22 C -0.09 -2.76 6.33 22.38 0.14 -2.62 16 23 Cl -0.06 -1.88 28.49 -2.72 -0.08 -1.96 16 24 H 0.07 0.63 7.66 -2.39 -0.02 0.62 16 25 H 0.07 0.64 7.65 -2.39 -0.02 0.62 16 26 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.18 2.34 6.28 -2.91 -0.02 2.32 16 28 H 0.16 3.58 6.21 -2.91 -0.02 3.56 16 29 H 0.17 6.06 6.21 -2.91 -0.02 6.04 16 30 H 0.15 8.25 6.17 -2.91 -0.02 8.23 16 31 H 0.30 13.18 8.29 -92.71 -0.77 12.41 16 32 H 0.13 5.26 7.55 -2.91 -0.02 5.23 16 Total: -1.00 -66.11 296.95 3.60 -62.50 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 1.18 Total: 19.88 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 4.85 Total: -14.32 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -3.47 Total: -96.05 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.91 Total: -8.02 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -66.11 3.60 -62.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240029737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.133 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds