Wall clock time and date at job start Tue Mar 31 2020 06:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48507 * 109.47192 * 269.99782 * 3 2 1 5 5 H 1.48494 * 109.47232 * 30.00063 * 3 2 1 6 6 H 1.48498 * 109.47156 * 150.00226 * 3 2 1 7 7 C 1.37887 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99673 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47178 * 180.02562 * 9 7 2 11 11 C 1.38346 * 119.94100 * 269.97657 * 10 9 7 12 12 C 1.38301 * 120.24887 * 179.97438 * 11 10 9 13 13 C 1.38048 * 120.11770 * 359.77101 * 12 11 10 14 14 C 1.39314 * 119.87460 * 0.50461 * 13 12 11 15 15 C 1.48388 * 120.11978 * 179.74417 * 14 13 12 16 16 C 1.39365 * 120.09708 * 179.75261 * 15 14 13 17 17 C 1.37990 * 119.93573 * 179.97438 * 16 15 14 18 18 C 1.38415 * 120.14119 * 0.02562 * 17 16 15 19 19 Cl 1.73593 * 119.90489 * 179.97438 * 18 17 16 20 20 C 1.38640 * 120.18746 * 359.67550 * 18 17 16 21 21 F 1.35099 * 119.96647 * 180.32248 * 20 18 17 22 22 C 1.38223 * 120.06014 * 0.60918 * 20 18 17 23 23 C 1.38002 * 119.94195 * 89.99731 * 10 9 7 24 24 H 0.96996 * 119.99992 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47229 * 59.99939 * 9 7 2 26 26 H 1.09001 * 109.46960 * 300.00264 * 9 7 2 27 27 H 1.07999 * 119.87484 * 0.02600 * 11 10 9 28 28 H 1.07993 * 119.94010 * 180.02562 * 12 11 10 29 29 H 1.07996 * 120.05847 * 180.24944 * 13 12 11 30 30 H 1.07998 * 120.03410 * 359.94765 * 16 15 14 31 31 H 1.08009 * 119.93414 * 179.97438 * 17 16 15 32 32 H 1.08002 * 120.07043 * 179.69921 * 22 20 18 33 33 H 1.08001 * 120.05995 * 359.96029 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6786 -4.1698 -1.1994 12 6 3.5777 -5.2206 -1.2068 13 6 4.0363 -5.7483 -0.0164 14 6 3.5838 -5.2271 1.1937 15 6 4.0689 -5.7938 2.4764 16 6 3.6198 -5.2687 3.6867 17 6 4.0727 -5.7987 4.8776 18 6 4.9726 -6.8504 4.8727 19 17 5.5388 -7.5119 6.3745 20 6 5.4182 -7.3811 3.6719 21 9 6.2915 -8.4119 3.6724 22 6 4.9743 -6.8526 2.4743 23 6 2.6779 -4.1681 1.1953 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.3258 -3.7570 -2.1329 28 1 3.9246 -5.6265 -2.1455 29 1 4.7415 -6.5662 -0.0234 30 1 2.9184 -4.4476 3.6926 31 1 3.7250 -5.3914 5.8156 32 1 5.3251 -7.2627 1.5388 33 1 2.3275 -3.7573 2.1306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241231509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:55 Heat of formation + Delta-G solvation = -17.448635 kcal Electronic energy + Delta-G solvation = -19017.633996 eV Core-core repulsion = 15754.729987 eV Total energy + Delta-G solvation = -3262.904009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.10085 -39.78992 -38.22127 -36.67829 -33.72163 -32.36975 -31.43087 -30.77705 -28.71532 -27.12945 -23.89664 -23.57471 -22.80042 -21.10948 -20.06349 -17.85053 -16.73927 -16.60235 -16.40162 -15.90611 -15.90203 -14.84672 -14.53882 -14.33203 -14.09962 -13.71018 -13.32945 -13.16184 -12.76105 -12.66722 -12.27722 -12.10220 -11.73840 -11.49863 -11.37263 -11.17728 -11.05438 -10.80005 -10.58075 -10.39850 -9.70768 -9.57060 -9.35801 -9.04824 -8.49887 -8.13282 -7.78376 -6.12028 -4.16423 0.49786 0.94004 1.83638 1.92609 2.00794 3.25655 3.32420 3.35590 3.39317 3.87781 4.30550 4.41747 4.46511 4.58533 4.89708 4.99392 5.22507 5.23545 5.32736 5.49886 5.62000 5.71295 5.77493 5.84439 5.95468 6.02443 6.29469 6.38805 6.55011 6.56989 6.88341 7.00311 7.02752 7.38648 7.53723 7.70589 7.83561 8.22090 8.88887 9.48167 10.97818 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.003521 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.600095 B = 7950.016980 C = 8833.926773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.033 4.033 11 C -0.110 4.110 12 C -0.123 4.123 13 C -0.129 4.129 14 C -0.071 4.071 15 C 0.013 3.987 16 C -0.113 4.113 17 C -0.077 4.077 18 C -0.086 4.086 19 Cl -0.059 7.059 20 C 0.112 3.888 21 F -0.130 7.130 22 C -0.145 4.145 23 C -0.101 4.101 24 H 0.263 0.737 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 -13.974 6.780 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.033 4.033 11 C -0.128 4.128 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.071 4.071 15 C 0.013 3.987 16 C -0.131 4.131 17 C -0.095 4.095 18 C -0.113 4.113 19 Cl -0.030 7.030 20 C 0.092 3.908 21 F -0.108 7.108 22 C -0.163 4.163 23 C -0.119 4.119 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.346 -13.958 6.923 17.676 hybrid contribution 0.711 0.719 0.102 1.017 sum 9.058 -13.239 7.026 17.512 Atomic orbital electron populations 1.69948 1.06046 1.26953 1.50199 1.25005 0.94877 0.99286 0.95041 0.86539 0.79858 0.83099 0.78254 1.20542 1.21106 1.19762 1.21041 0.93054 0.89790 1.51417 0.92421 1.18381 0.92510 0.89510 0.98591 1.20669 0.96053 0.94994 0.91631 1.21268 0.97194 0.95716 0.98583 1.20996 0.98354 0.97447 0.97312 1.20944 1.01127 1.00765 0.91889 1.18553 0.99658 0.98030 0.90873 1.18813 0.93511 0.92990 0.93384 1.21426 1.00547 1.00633 0.90509 1.20921 0.95018 0.93893 0.99695 1.20989 1.03433 1.00641 0.86258 1.98371 1.88343 1.85165 1.31137 1.17247 0.92577 0.88199 0.92810 1.91526 1.66428 1.55614 1.97274 1.21175 0.99985 0.98395 0.96775 1.21167 0.96854 0.95025 0.98832 0.92747 0.95132 0.95186 0.86072 0.86547 0.86713 0.83520 0.83807 0.83599 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.80 9.09 -34.44 -0.31 -14.11 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.05 1.14 5.10 -29.04 -0.15 0.99 16 10 C -0.03 -0.67 5.06 -104.67 -0.53 -1.20 16 11 C -0.11 -1.96 9.69 -39.52 -0.38 -2.35 16 12 C -0.12 -1.85 10.03 -39.63 -0.40 -2.25 16 13 C -0.13 -1.86 9.43 -39.25 -0.37 -2.23 16 14 C -0.07 -1.10 5.88 -104.90 -0.62 -1.72 16 15 C 0.01 0.18 5.88 -104.90 -0.62 -0.44 16 16 C -0.11 -1.39 9.42 -39.25 -0.37 -1.76 16 17 C -0.08 -0.84 9.81 -39.61 -0.39 -1.23 16 18 C -0.09 -1.02 6.33 -39.37 -0.25 -1.27 16 19 Cl -0.06 -0.65 28.60 -51.86 -1.48 -2.13 16 20 C 0.11 1.39 7.27 -39.44 -0.29 1.10 16 21 F -0.13 -1.64 16.83 2.25 0.04 -1.61 16 22 C -0.14 -1.77 9.40 -39.19 -0.37 -2.14 16 23 C -0.10 -1.80 9.08 -39.25 -0.36 -2.16 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 25 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 27 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.11 1.33 6.21 -52.49 -0.33 1.00 16 30 H 0.15 1.70 6.20 -52.49 -0.33 1.37 16 31 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 32 H 0.15 1.54 6.21 -52.49 -0.33 1.21 16 33 H 0.12 2.09 6.21 -52.49 -0.33 1.76 16 LS Contribution 307.72 15.07 4.64 4.64 Total: -1.00 -28.36 307.72 -9.54 -37.90 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -2.95 Total: -0.68 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -5.49 Total: -29.22 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.74 Total: -24.77 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.36 -9.54 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241231509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.448 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds