Wall clock time and date at job start Tue Mar 31 2020 06:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48507 * 109.47192 * 269.99782 * 3 2 1 5 5 H 1.48494 * 109.47232 * 30.00063 * 3 2 1 6 6 H 1.48498 * 109.47156 * 150.00226 * 3 2 1 7 7 C 1.37887 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99673 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47178 * 180.02562 * 9 7 2 11 11 C 1.38346 * 119.94100 * 269.97657 * 10 9 7 12 12 C 1.38301 * 120.24887 * 179.97438 * 11 10 9 13 13 C 1.38048 * 120.11770 * 359.77101 * 12 11 10 14 14 C 1.39314 * 119.87460 * 0.50461 * 13 12 11 15 15 C 1.48388 * 120.11978 * 179.74417 * 14 13 12 16 16 C 1.39365 * 120.09708 * 179.75261 * 15 14 13 17 17 C 1.37990 * 119.93573 * 179.97438 * 16 15 14 18 18 C 1.38415 * 120.14119 * 0.02562 * 17 16 15 19 19 Cl 1.73593 * 119.90489 * 179.97438 * 18 17 16 20 20 C 1.38640 * 120.18746 * 359.67550 * 18 17 16 21 21 F 1.35099 * 119.96647 * 180.32248 * 20 18 17 22 22 C 1.38223 * 120.06014 * 0.60918 * 20 18 17 23 23 C 1.38002 * 119.94195 * 89.99731 * 10 9 7 24 24 H 0.96996 * 119.99992 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47229 * 59.99939 * 9 7 2 26 26 H 1.09001 * 109.46960 * 300.00264 * 9 7 2 27 27 H 1.07999 * 119.87484 * 0.02600 * 11 10 9 28 28 H 1.07993 * 119.94010 * 180.02562 * 12 11 10 29 29 H 1.07996 * 120.05847 * 180.24944 * 13 12 11 30 30 H 1.07998 * 120.03410 * 359.94765 * 16 15 14 31 31 H 1.08009 * 119.93414 * 179.97438 * 17 16 15 32 32 H 1.08002 * 120.07043 * 179.69921 * 22 20 18 33 33 H 1.08001 * 120.05995 * 359.96029 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6786 -4.1698 -1.1994 12 6 3.5777 -5.2206 -1.2068 13 6 4.0363 -5.7483 -0.0164 14 6 3.5838 -5.2271 1.1937 15 6 4.0689 -5.7938 2.4764 16 6 3.6198 -5.2687 3.6867 17 6 4.0727 -5.7987 4.8776 18 6 4.9726 -6.8504 4.8727 19 17 5.5388 -7.5119 6.3745 20 6 5.4182 -7.3811 3.6719 21 9 6.2915 -8.4119 3.6724 22 6 4.9743 -6.8526 2.4743 23 6 2.6779 -4.1681 1.1953 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.3258 -3.7570 -2.1329 28 1 3.9246 -5.6265 -2.1455 29 1 4.7415 -6.5662 -0.0234 30 1 2.9184 -4.4476 3.6926 31 1 3.7250 -5.3914 5.8156 32 1 5.3251 -7.2627 1.5388 33 1 2.3275 -3.7573 2.1306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241231509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:55 Heat of formation + Delta-G solvation = -29.171092 kcal Electronic energy + Delta-G solvation = -19018.142320 eV Core-core repulsion = 15754.729987 eV Total energy + Delta-G solvation = -3263.412333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.05277 -40.89197 -39.38201 -37.60495 -35.52934 -33.74704 -32.79862 -31.87439 -29.88178 -28.84377 -25.44659 -24.72915 -24.08940 -22.27034 -21.39596 -18.89381 -18.47945 -17.75131 -17.58635 -17.13582 -16.85292 -16.51181 -15.86801 -15.67126 -15.06445 -14.78472 -14.59866 -14.29493 -14.21666 -14.06310 -13.57997 -13.40834 -13.13891 -12.89325 -12.74291 -12.56122 -12.47180 -12.30328 -12.04360 -11.76461 -11.55154 -11.31696 -10.60396 -10.46746 -10.00426 -9.52170 -8.98693 -8.20292 -6.33182 -0.54524 0.01324 0.63082 0.79941 0.92347 1.40899 1.41127 1.52584 2.34642 2.42458 2.92796 3.11036 3.11233 3.43994 3.59004 3.95436 4.05085 4.13156 4.15616 4.37359 4.47597 4.63005 4.64396 4.73468 4.86171 4.94204 5.07690 5.20596 5.22935 5.36168 5.38877 5.56537 5.64631 5.69111 5.76701 6.05944 6.10524 6.23703 6.79766 7.35679 8.89028 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.003521 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.600095 B = 7950.016980 C = 8833.926773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.056 3.944 10 C -0.065 4.065 11 C -0.128 4.128 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.064 4.064 15 C -0.004 4.004 16 C -0.116 4.116 17 C -0.072 4.072 18 C -0.087 4.087 19 Cl -0.051 7.051 20 C 0.102 3.898 21 F -0.132 7.132 22 C -0.135 4.135 23 C -0.116 4.116 24 H 0.265 0.735 25 H 0.004 0.996 26 H 0.005 0.995 27 H 0.116 0.884 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.642 -15.136 7.182 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.019 3.981 10 C -0.065 4.065 11 C -0.146 4.146 12 C -0.130 4.130 13 C -0.139 4.139 14 C -0.064 4.064 15 C -0.005 4.005 16 C -0.134 4.134 17 C -0.090 4.090 18 C -0.114 4.114 19 Cl -0.022 7.022 20 C 0.082 3.918 21 F -0.110 7.110 22 C -0.154 4.154 23 C -0.133 4.133 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.024 0.976 27 H 0.134 0.866 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.184 0.816 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.582 -15.132 7.327 19.866 hybrid contribution 0.058 0.953 0.061 0.956 sum 10.640 -14.180 7.388 19.206 Atomic orbital electron populations 1.70069 1.07615 1.27935 1.51271 1.25882 0.95705 1.02961 0.94615 0.85488 0.78661 0.78654 0.78536 1.19789 1.20557 1.19028 1.21371 0.93067 0.91208 1.50948 0.92738 1.18108 0.92897 0.91086 0.96018 1.20333 0.97154 0.95217 0.93755 1.21309 0.98586 0.97209 0.97457 1.21327 0.96624 0.95793 0.99294 1.21414 1.00641 1.00893 0.90951 1.18703 0.98350 0.96789 0.92554 1.18740 0.94873 0.94134 0.92722 1.21542 1.00440 1.00626 0.90825 1.21115 0.94372 0.93371 1.00170 1.21168 1.03126 1.00524 0.86589 1.98378 1.88221 1.85036 1.30595 1.17333 0.92899 0.88429 0.93107 1.91524 1.66503 1.55691 1.97290 1.21282 0.98987 0.97492 0.97597 1.21148 0.98037 0.96294 0.97870 0.92572 0.97771 0.97641 0.86636 0.82967 0.82903 0.83531 0.81597 0.81640 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.53 -29.33 9.09 25.60 0.23 -29.10 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 9 C 0.06 2.89 5.10 29.10 0.15 3.04 16 10 C -0.06 -2.70 5.06 -19.90 -0.10 -2.80 16 11 C -0.13 -4.60 9.69 22.31 0.22 -4.38 16 12 C -0.11 -3.11 10.03 22.24 0.22 -2.89 16 13 C -0.12 -3.11 9.43 22.48 0.21 -2.90 16 14 C -0.06 -1.88 5.88 -20.04 -0.12 -2.00 16 15 C 0.00 -0.11 5.88 -20.04 -0.12 -0.23 16 16 C -0.12 -2.69 9.42 22.48 0.21 -2.48 16 17 C -0.07 -1.43 9.81 22.25 0.22 -1.21 16 18 C -0.09 -1.85 6.33 22.41 0.14 -1.71 16 19 Cl -0.05 -1.02 28.60 -2.72 -0.08 -1.10 16 20 C 0.10 2.27 7.27 22.36 0.16 2.44 16 21 F -0.13 -2.99 16.83 44.97 0.76 -2.24 16 22 C -0.14 -2.90 9.40 22.52 0.21 -2.68 16 23 C -0.12 -4.19 9.08 22.48 0.20 -3.99 16 24 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 26 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 27 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.15 2.75 6.21 -2.91 -0.02 2.73 16 30 H 0.15 3.35 6.20 -2.91 -0.02 3.33 16 31 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.17 2.78 6.21 -2.91 -0.02 2.77 16 33 H 0.12 4.27 6.21 -2.91 -0.02 4.25 16 Total: -1.00 -62.55 307.72 6.45 -56.10 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.15 Total: 6.46 kcal Atomic # 6 Polarization: -52.35 SS G_CDS: 2.31 Total: -50.04 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.28 Total: -54.56 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.76 Total: -2.24 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -62.55 6.45 -56.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241231509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.929 kcal (2) G-P(sol) polarization free energy of solvation -62.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds