Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35932 * 116.99862 * 2 1 4 4 C 1.38839 * 119.98661 * 0.02562 * 3 2 1 5 5 C 1.38343 * 120.27553 * 179.97438 * 4 3 2 6 6 C 1.37925 * 120.23717 * 359.97438 * 5 4 3 7 7 C 1.39714 * 119.96545 * 0.02562 * 6 5 4 8 8 C 1.47760 * 120.13214 * 179.97438 * 7 6 5 9 9 N 1.32878 * 120.25177 * 233.96636 * 8 7 6 10 10 C 1.32009 * 120.07673 * 180.30275 * 9 8 7 11 11 C 1.39201 * 120.58981 * 359.71151 * 10 9 8 12 12 N 1.31600 * 120.50789 * 359.97438 * 11 10 9 13 13 C 1.33975 * 119.89998 * 0.02562 * 12 11 10 14 14 C 1.40791 * 120.28963 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00594 * 188.38687 * 14 13 12 16 16 C 1.40174 * 119.99362 * 8.38748 * 14 13 12 17 17 N 1.30680 * 120.00262 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99580 * 180.27369 * 16 14 13 19 19 H 1.48506 * 109.46901 * 269.72259 * 18 16 14 20 20 H 1.48492 * 109.47046 * 29.72311 * 18 16 14 21 21 H 1.48502 * 109.46947 * 149.72548 * 18 16 14 22 22 C 1.38536 * 119.98528 * 180.25325 * 3 2 1 23 23 Cl 1.73599 * 120.11796 * 0.02586 * 22 3 2 24 24 H 1.08999 * 109.46564 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46828 * 299.99869 * 1 2 3 26 26 H 1.08999 * 109.47008 * 60.00047 * 1 2 3 27 27 H 1.08008 * 119.85827 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.87566 * 179.97438 * 5 4 3 29 29 H 1.08000 * 120.01029 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.70548 * 179.68002 * 10 9 8 31 31 H 1.08001 * 119.74545 * 180.02562 * 11 10 9 32 32 H 0.97002 * 119.99941 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2897 2.3754 0.0005 5 6 1.9115 3.6112 0.0011 6 6 3.2881 3.6961 0.0016 7 6 4.0591 2.5309 0.0011 8 6 5.5342 2.6175 0.0011 9 7 6.2420 1.9831 -0.9274 10 6 7.5600 2.0580 -0.9206 11 6 8.2221 2.8035 0.0507 12 7 7.5437 3.4460 0.9774 13 6 6.2055 3.3838 0.9894 14 6 5.4716 4.0675 1.9774 15 1 4.4073 3.9075 2.0671 16 6 6.1224 4.9559 2.8446 17 7 7.4102 5.1498 2.7357 18 14 5.1500 5.8573 4.1605 19 1 4.6589 7.1486 3.6157 20 1 3.9938 5.0248 4.5790 21 1 6.0245 6.1151 5.3327 22 6 3.4296 1.2834 -0.0053 23 17 4.3777 -0.1708 -0.0126 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2112 2.3159 0.0005 28 1 1.3167 4.5127 0.0011 29 1 3.7697 4.6627 0.0025 30 1 8.1296 1.5358 -1.6751 31 1 9.3008 2.8558 0.0431 32 1 7.8605 5.7644 3.3361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241856038.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = 4.995703 kcal Electronic energy + Delta-G solvation = -20266.481166 eV Core-core repulsion = 17024.470379 eV Total energy + Delta-G solvation = -3242.010788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25173 -40.54484 -38.30324 -37.11530 -35.97099 -34.14861 -32.98650 -31.39355 -30.19960 -28.29052 -27.74802 -25.06413 -23.91136 -23.17177 -22.15255 -19.53444 -19.07379 -17.96466 -17.32863 -17.00388 -16.76240 -16.61755 -16.46654 -15.82673 -15.13263 -14.90577 -14.51550 -14.39355 -13.99027 -13.85517 -13.29284 -13.03228 -12.95198 -12.81359 -12.48954 -12.32929 -12.04478 -11.97888 -11.85173 -11.63707 -11.52591 -11.41810 -10.98711 -10.01615 -9.48368 -9.20055 -9.05081 -8.41145 -6.63519 0.06598 0.41913 0.74805 1.18287 1.39806 1.43737 1.52837 1.55746 2.17526 2.34777 2.72177 2.79775 3.68568 3.78914 4.00664 4.11716 4.19363 4.34271 4.41714 4.47540 4.48053 4.61836 4.67179 4.77735 4.80010 5.00358 5.11002 5.18906 5.22932 5.44684 5.64415 5.76552 5.82944 6.12395 6.42377 6.47365 6.71836 7.34188 7.89948 8.26982 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.007083 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.227887 B = 3952.288111 C = 5242.007633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.126 3.874 4 C -0.200 4.200 5 C -0.068 4.068 6 C -0.141 4.141 7 C 0.043 3.957 8 C -0.044 4.044 9 N -0.412 5.412 10 C -0.122 4.122 11 C 0.079 3.921 12 N -0.488 5.488 13 C 0.195 3.805 14 C -0.421 4.421 15 H 0.103 0.897 16 C 0.024 3.976 17 N -0.742 5.742 18 Si 0.984 3.016 19 H -0.252 1.252 20 H -0.253 1.253 21 H -0.268 1.268 22 C -0.086 4.086 23 Cl -0.075 7.075 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.173 0.827 28 H 0.169 0.831 29 H 0.126 0.874 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.254 -1.565 -1.300 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.080 3.920 4 C -0.219 4.219 5 C -0.086 4.086 6 C -0.160 4.160 7 C 0.041 3.959 8 C -0.190 4.190 9 N -0.124 5.124 10 C -0.283 4.283 11 C -0.091 4.091 12 N -0.205 5.205 13 C 0.071 3.929 14 C -0.451 4.451 15 H 0.121 0.879 16 C -0.200 4.200 17 N -0.362 5.362 18 Si 0.803 3.197 19 H -0.176 1.176 20 H -0.176 1.176 21 H -0.192 1.192 22 C -0.114 4.114 23 Cl -0.046 7.046 24 H 0.136 0.864 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.190 0.810 28 H 0.186 0.814 29 H 0.144 0.856 30 H 0.175 0.825 31 H 0.176 0.824 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.872 -1.770 -1.202 13.049 hybrid contribution 0.515 0.082 0.341 0.623 sum -12.357 -1.688 -0.861 12.501 Atomic orbital electron populations 1.23419 0.75938 1.05666 1.02735 1.86128 1.23888 1.25818 1.88577 1.18639 0.89408 0.86401 0.97595 1.21519 1.01358 0.90387 1.08633 1.21272 0.93052 0.98704 0.95528 1.21279 0.94475 0.97013 1.03257 1.18172 0.90752 0.91364 0.95597 1.20250 0.92667 1.07205 0.98887 1.67818 1.08221 1.14496 1.21845 1.23056 0.90827 1.09453 1.04962 1.24022 1.01381 0.92320 0.91380 1.69494 1.07118 1.20870 1.22985 1.19618 0.89478 0.91196 0.92615 1.20061 0.96710 1.18025 1.10285 0.87940 1.27141 0.95890 0.97012 0.99991 1.70120 1.10744 1.24247 1.31136 0.85159 0.78936 0.78999 0.76608 1.17611 1.17610 1.19231 1.20518 0.89403 0.87787 1.13673 1.98295 1.73012 1.36086 1.97191 0.86440 0.91163 0.91064 0.80983 0.81389 0.85631 0.82544 0.82403 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -9.87 9.95 -92.78 -0.92 -10.79 16 3 C 0.13 4.25 6.67 22.48 0.15 4.40 16 4 C -0.20 -5.29 9.04 22.44 0.20 -5.08 16 5 C -0.07 -1.89 10.02 22.22 0.22 -1.67 16 6 C -0.14 -5.33 7.75 22.55 0.17 -5.15 16 7 C 0.04 1.95 4.98 -20.04 -0.10 1.85 16 8 C -0.04 -2.24 5.73 42.42 0.24 -2.00 16 9 N -0.41 -20.88 9.37 -182.30 -1.71 -22.58 16 10 C -0.12 -5.70 11.22 84.90 0.95 -4.75 16 11 C 0.08 3.82 11.22 84.96 0.95 4.77 16 12 N -0.49 -26.93 8.09 -187.84 -1.52 -28.45 16 13 C 0.20 10.70 6.53 40.36 0.26 10.97 16 14 C -0.42 -21.61 7.94 23.37 0.19 -21.43 16 15 H 0.10 4.94 5.79 -2.91 -0.02 4.93 16 16 C 0.02 1.14 5.50 85.33 0.47 1.61 16 17 N -0.74 -37.93 11.52 21.86 0.25 -37.67 16 18 Si 0.98 35.33 29.56 68.60 2.03 37.36 16 19 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16 20 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 21 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 22 C -0.09 -3.60 6.36 22.70 0.14 -3.45 16 23 Cl -0.07 -3.23 26.79 -2.72 -0.07 -3.31 16 24 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 26 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 27 H 0.17 2.95 6.28 -2.91 -0.02 2.93 16 28 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.13 4.90 7.59 -2.91 -0.02 4.88 16 30 H 0.16 6.19 8.06 -2.91 -0.02 6.16 16 31 H 0.16 6.41 8.06 -2.91 -0.02 6.38 16 32 H 0.29 13.11 8.29 -92.71 -0.77 12.34 16 Total: -1.00 -68.43 294.94 4.20 -64.24 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.17 Total: 19.76 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.97 Total: -18.55 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -2.98 Total: -88.71 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.92 Total: -10.79 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Atomic # 17 Polarization: -3.23 SS G_CDS: -0.07 Total: -3.31 kcal Total: -68.43 4.20 -64.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241856038.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.231 kcal (2) G-P(sol) polarization free energy of solvation -68.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds