Wall clock time and date at job start Tue Mar 31 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35925 * 116.99909 * 2 1 4 4 C 1.38779 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.38262 * 120.21956 * 180.02562 * 4 3 2 6 6 C 1.38031 * 120.20783 * 359.73644 * 5 4 3 7 7 C 1.39416 * 119.98965 * 0.51475 * 6 5 4 8 8 C 1.48276 * 120.10562 * 179.76524 * 7 6 5 9 9 C 1.40047 * 119.98540 * 46.57557 * 8 7 6 10 10 N 1.32171 * 120.29443 * 179.97438 * 9 8 7 11 11 C 1.31885 * 120.28491 * 359.70721 * 10 9 8 12 12 C 1.40815 * 119.96464 * 0.59455 * 11 10 9 13 13 C 1.41331 * 120.14717 * 179.68245 * 12 11 10 14 14 H 1.08000 * 120.00188 * 204.36138 * 13 12 11 15 15 C 1.40049 * 119.99684 * 24.35380 * 13 12 11 16 16 N 1.30726 * 120.00364 * 17.47629 * 15 13 12 17 17 Si 1.86804 * 120.00068 * 197.47151 * 15 13 12 18 18 H 1.48501 * 109.47011 * 265.02176 * 17 15 13 19 19 H 1.48500 * 109.47052 * 25.01740 * 17 15 13 20 20 H 1.48498 * 109.47186 * 145.01588 * 17 15 13 21 21 N 1.32517 * 119.98773 * 226.59788 * 8 7 6 22 22 C 1.38610 * 120.00010 * 179.97438 * 3 2 1 23 23 Cl 1.73607 * 120.10271 * 359.95823 * 22 3 2 24 24 H 1.08995 * 109.47369 * 299.99605 * 1 2 3 25 25 H 1.08998 * 109.47347 * 60.00232 * 1 2 3 26 26 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.88712 * 0.03803 * 4 3 2 28 28 H 1.08001 * 119.89410 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.00095 * 180.26484 * 6 5 4 30 30 H 1.08005 * 119.85527 * 0.02684 * 9 8 7 31 31 H 1.08008 * 120.01932 * 180.27410 * 11 10 9 32 32 H 0.97003 * 120.00579 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2902 2.3750 -0.0005 5 6 1.9132 3.6093 -0.0011 6 6 3.2910 3.6919 0.0044 7 6 4.0588 2.5282 -0.0003 8 6 5.5391 2.6140 0.0003 9 6 6.1895 3.4831 0.8850 10 7 7.5087 3.5640 0.8911 11 6 8.2243 2.8226 0.0680 12 6 7.5820 1.9495 -0.8308 13 6 8.3449 1.1582 -1.7193 14 1 7.9054 0.8035 -2.6399 15 6 9.6708 0.8340 -1.4059 16 7 10.1006 0.9555 -0.1773 17 14 10.8253 0.2279 -2.7435 18 1 10.8369 -1.2571 -2.7519 19 1 10.3599 0.7267 -4.0625 20 1 12.1969 0.7321 -2.4795 21 7 6.2461 1.8684 -0.8366 22 6 3.4303 1.2837 0.0005 23 17 4.3784 -0.1706 0.0023 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2117 2.3163 -0.0003 28 1 1.3198 4.5117 -0.0011 29 1 3.7741 4.6578 0.0083 30 1 5.6106 4.0895 1.5660 31 1 9.3023 2.8889 0.0797 32 1 11.0189 0.7306 0.0399 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241857443.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:55 Heat of formation + Delta-G solvation = -2.368267 kcal Electronic energy + Delta-G solvation = -19792.308146 eV Core-core repulsion = 16549.978033 eV Total energy + Delta-G solvation = -3242.330113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37436 -40.70573 -38.47015 -37.17177 -36.04987 -34.58106 -32.98774 -31.42664 -30.31541 -28.11941 -28.02808 -25.13327 -24.15102 -23.16125 -22.37062 -19.80275 -18.70626 -18.03565 -17.38492 -17.25301 -16.95737 -16.74218 -16.66188 -15.97709 -15.19133 -15.03056 -14.68795 -14.55217 -14.09187 -13.52777 -13.44259 -13.09577 -12.92505 -12.88039 -12.72454 -12.42199 -12.11204 -12.05392 -11.97175 -11.86942 -11.72552 -11.44762 -11.11408 -10.20509 -9.38186 -9.27133 -9.16029 -8.88289 -6.68138 -0.16208 0.29745 0.66408 0.97639 1.37860 1.38751 1.48414 1.56706 2.16262 2.27267 2.54386 2.66440 3.42439 3.64568 3.91603 4.01519 4.06222 4.19195 4.30634 4.41908 4.45464 4.51324 4.60089 4.63396 4.77473 4.97924 5.04055 5.10123 5.25553 5.34743 5.44251 5.64436 5.70766 6.15020 6.34791 6.49693 6.54222 7.18408 7.67354 8.13750 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.004865 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.761175 B = 5754.184304 C = 6544.952097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.124 3.876 4 C -0.187 4.187 5 C -0.062 4.062 6 C -0.133 4.133 7 C -0.003 4.003 8 C 0.127 3.873 9 C -0.089 4.089 10 N -0.452 5.452 11 C -0.016 4.016 12 C 0.201 3.799 13 C -0.450 4.450 14 H 0.083 0.917 15 C 0.040 3.960 16 N -0.809 5.809 17 Si 1.000 3.000 18 H -0.262 1.262 19 H -0.256 1.256 20 H -0.256 1.256 21 N -0.518 5.518 22 C -0.076 4.076 23 Cl -0.071 7.071 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.177 0.823 28 H 0.179 0.821 29 H 0.146 0.854 30 H 0.162 0.838 31 H 0.151 0.849 32 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.234 1.810 -0.362 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.078 3.922 4 C -0.205 4.205 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.005 4.005 8 C -0.018 4.018 9 C -0.246 4.246 10 N -0.164 5.164 11 C -0.185 4.185 12 C 0.074 3.926 13 C -0.483 4.483 14 H 0.101 0.899 15 C -0.179 4.179 16 N -0.435 5.435 17 Si 0.819 3.181 18 H -0.186 1.186 19 H -0.179 1.179 20 H -0.179 1.179 21 N -0.236 5.236 22 C -0.104 4.104 23 Cl -0.042 7.042 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.194 0.806 28 H 0.196 0.804 29 H 0.163 0.837 30 H 0.180 0.820 31 H 0.169 0.831 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.879 1.456 -0.182 15.947 hybrid contribution 0.855 -0.599 -0.194 1.062 sum -15.024 0.857 -0.376 15.053 Atomic orbital electron populations 1.23448 0.75660 1.05773 1.02930 1.86155 1.24110 1.25887 1.88400 1.18701 0.89297 0.86713 0.97506 1.21653 1.01704 0.90416 1.06756 1.21374 0.93023 0.98776 0.94758 1.21342 0.94646 0.96600 1.02616 1.18447 0.90226 0.92406 0.99459 1.20759 0.93397 0.93631 0.93997 1.23096 0.90975 1.05675 1.04857 1.67864 1.07577 1.20908 1.20038 1.23686 1.00533 0.96502 0.97825 1.19642 0.88526 0.91798 0.92680 1.19595 0.96217 1.27745 1.04730 0.89872 1.26953 0.99376 0.92918 0.98603 1.69748 1.19315 1.33964 1.20450 0.84929 0.76582 0.78977 0.77661 1.18618 1.17936 1.17928 1.69159 1.07218 1.22359 1.24883 1.20511 0.89786 0.88154 1.11982 1.98363 1.72607 1.36213 1.96984 0.90721 0.90918 0.86639 0.80620 0.80362 0.83650 0.82043 0.83143 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -9.19 9.95 -92.71 -0.92 -10.12 16 3 C 0.12 3.75 6.67 22.49 0.15 3.90 16 4 C -0.19 -3.93 9.03 22.40 0.20 -3.72 16 5 C -0.06 -1.26 10.03 22.23 0.22 -1.04 16 6 C -0.13 -3.85 9.42 22.50 0.21 -3.64 16 7 C 0.00 -0.12 5.64 -20.04 -0.11 -0.23 16 8 C 0.13 6.17 5.89 42.15 0.25 6.42 16 9 C -0.09 -4.22 10.61 85.08 0.90 -3.32 16 10 N -0.45 -23.95 10.47 -192.04 -2.01 -25.96 16 11 C -0.02 -0.92 9.88 85.32 0.84 -0.08 16 12 C 0.20 11.54 6.41 40.23 0.26 11.80 16 13 C -0.45 -24.82 9.29 23.47 0.22 -24.60 16 14 H 0.08 4.54 7.91 -2.91 -0.02 4.52 16 15 C 0.04 1.99 5.15 85.30 0.44 2.43 16 16 N -0.81 -41.32 10.91 21.84 0.24 -41.08 16 17 Si 1.00 37.02 29.59 68.60 2.03 39.05 16 18 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 20 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 21 N -0.52 -28.44 8.87 -177.66 -1.58 -30.02 16 22 C -0.08 -2.98 6.34 22.65 0.14 -2.83 16 23 Cl -0.07 -3.15 26.46 -2.72 -0.07 -3.22 16 24 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 25 H 0.07 0.81 7.66 -2.39 -0.02 0.80 16 26 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.18 2.12 6.28 -2.91 -0.02 2.11 16 28 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.15 3.78 7.97 -2.91 -0.02 3.76 16 30 H 0.16 6.42 7.97 -2.91 -0.02 6.40 16 31 H 0.15 8.51 6.12 -2.91 -0.02 8.49 16 32 H 0.30 13.53 8.29 -92.71 -0.77 12.76 16 Total: -1.00 -71.14 297.81 3.70 -67.45 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.17 Total: 17.48 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 4.84 Total: -13.58 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -3.35 Total: -97.06 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.92 Total: -10.12 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Atomic # 17 Polarization: -3.15 SS G_CDS: -0.07 Total: -3.22 kcal Total: -71.14 3.70 -67.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241857443.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.081 kcal (2) G-P(sol) polarization free energy of solvation -71.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds