Wall clock time and date at job start Tue Mar 31 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35725 * 116.99767 * 2 1 4 4 C 1.38539 * 120.14490 * 359.97438 * 3 2 1 5 5 C 1.38295 * 120.08428 * 180.02562 * 4 3 2 6 6 Cl 1.73599 * 119.81777 * 179.97438 * 5 4 3 7 7 C 1.38704 * 120.36713 * 0.02562 * 5 4 3 8 8 C 1.37761 * 120.27997 * 359.68798 * 7 5 4 9 9 C 1.39772 * 119.91206 * 0.58256 * 8 7 5 10 10 C 1.47560 * 120.18176 * 179.72115 * 9 8 7 11 11 N 1.33062 * 120.55456 * 129.85178 * 10 9 8 12 12 C 1.31898 * 120.03333 * 180.26274 * 11 10 9 13 13 C 1.39026 * 121.22170 * 359.73883 * 12 11 10 14 14 N 1.31522 * 121.14844 * 359.97438 * 13 12 11 15 15 C 1.34088 * 119.86321 * 359.97438 * 14 13 12 16 16 C 1.40709 * 120.58178 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00060 * 171.81321 * 16 15 14 18 18 C 1.40158 * 120.00368 * 351.81717 * 16 15 14 19 19 N 1.30701 * 119.99670 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00228 * 180.27620 * 18 16 15 21 21 H 1.48499 * 109.47099 * 179.72490 * 20 18 16 22 22 H 1.48503 * 109.46899 * 299.71872 * 20 18 16 23 23 H 1.48499 * 109.47217 * 59.72295 * 20 18 16 24 24 H 1.09000 * 109.46867 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47424 * 300.00049 * 1 2 3 26 26 H 1.09005 * 109.46691 * 60.00562 * 1 2 3 27 27 H 1.08000 * 119.95622 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.86095 * 179.97438 * 7 5 4 29 29 H 1.08000 * 120.04723 * 180.30268 * 8 7 5 30 30 H 1.07997 * 119.38836 * 179.71667 * 12 11 10 31 31 H 1.07999 * 119.42571 * 179.97438 * 13 12 11 32 32 H 0.97001 * 120.00150 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3731 -0.0005 5 6 1.9226 3.6047 -0.0011 6 17 0.9740 5.0586 -0.0024 7 6 3.3073 3.6847 -0.0016 8 6 4.0695 2.5372 0.0049 9 6 3.4459 1.2863 -0.0003 10 6 4.2565 0.0533 0.0004 11 7 4.0109 -0.9172 0.8770 12 6 4.7453 -2.0128 0.8718 13 6 5.7791 -2.1832 -0.0420 14 7 6.0592 -1.2569 -0.9327 15 6 5.3404 -0.1255 -0.9682 16 6 5.6267 0.8751 -1.9151 17 1 4.9638 1.7208 -2.0242 18 6 6.7720 0.7745 -2.7167 19 7 7.5744 -0.2487 -2.5843 20 14 7.1560 2.1068 -3.9683 21 1 8.4162 1.7705 -4.6783 22 1 6.0449 2.1995 -4.9492 23 1 7.3123 3.4094 -3.2726 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.2149 2.3184 -0.0005 28 1 3.7901 4.6509 -0.0024 29 1 5.1474 2.6039 0.0094 30 1 4.5398 -2.7919 1.5909 31 1 6.3623 -3.0919 -0.0200 32 1 8.3672 -0.3182 -3.1388 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241889289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:26 Heat of formation + Delta-G solvation = 19.280246 kcal Electronic energy + Delta-G solvation = -20231.721390 eV Core-core repulsion = 16990.330026 eV Total energy + Delta-G solvation = -3241.391363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80333 -38.47469 -37.17604 -35.97469 -34.18558 -32.43881 -31.30294 -29.84716 -28.81190 -26.91197 -26.15021 -23.36334 -22.16689 -21.53085 -20.76111 -17.83869 -17.66837 -16.25142 -16.01834 -15.63197 -15.31880 -14.92835 -14.68471 -14.23092 -13.81905 -13.50907 -13.01498 -12.85018 -12.69799 -12.28001 -11.75638 -11.61420 -11.53806 -11.45441 -11.34761 -10.97430 -10.70462 -10.62310 -10.51724 -10.24646 -9.88778 -9.57240 -9.20241 -8.45682 -8.02338 -7.54471 -7.29275 -6.62013 -4.77857 1.43835 1.80958 2.37466 2.45873 2.93212 2.95015 2.97312 3.20050 3.70314 3.73951 4.12090 4.54589 5.12371 5.20582 5.32376 5.36650 5.42641 5.57608 5.66737 5.74650 5.94324 6.09728 6.09873 6.22294 6.30124 6.53484 6.61967 6.77404 6.84673 6.94330 7.02602 7.24585 7.62456 7.83547 7.93132 8.28015 8.56115 9.22763 9.77673 9.97074 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.006842 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.356632 B = 4091.484941 C = 5695.070351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.287 6.287 3 C 0.145 3.855 4 C -0.207 4.207 5 C -0.013 4.013 6 Cl -0.089 7.089 7 C -0.148 4.148 8 C -0.058 4.058 9 C 0.009 3.991 10 C -0.029 4.029 11 N -0.395 5.395 12 C -0.125 4.125 13 C 0.092 3.908 14 N -0.461 5.461 15 C 0.226 3.774 16 C -0.397 4.397 17 H 0.097 0.903 18 C 0.065 3.935 19 N -0.701 5.701 20 Si 0.911 3.089 21 H -0.274 1.274 22 H -0.260 1.260 23 H -0.258 1.258 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 5.450 1.457 9.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.199 6.199 3 C 0.098 3.902 4 C -0.227 4.227 5 C -0.040 4.040 6 Cl -0.060 7.060 7 C -0.167 4.167 8 C -0.077 4.077 9 C 0.007 3.993 10 C -0.178 4.178 11 N -0.106 5.106 12 C -0.286 4.286 13 C -0.078 4.078 14 N -0.178 5.178 15 C 0.100 3.900 16 C -0.426 4.426 17 H 0.115 0.885 18 C -0.164 4.164 19 N -0.321 5.321 20 Si 0.734 3.266 21 H -0.199 1.199 22 H -0.184 1.184 23 H -0.183 1.183 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.162 0.838 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.263 5.206 1.368 9.041 hybrid contribution -0.185 0.597 -0.541 0.827 sum -7.448 5.804 0.827 9.479 Atomic orbital electron populations 1.23018 0.79800 1.03491 1.00697 1.86280 1.19828 1.25843 1.87912 1.19004 0.91546 0.83631 0.96024 1.20822 0.99926 0.90626 1.11313 1.20513 0.91478 0.86145 1.05871 1.98323 1.73014 1.37568 1.97143 1.20774 0.91107 0.99282 1.05544 1.21153 1.00655 0.89615 0.96287 1.17807 0.88390 0.92758 1.00353 1.20935 1.01802 0.94531 1.00548 1.67763 1.23252 0.99627 1.20006 1.22378 1.01562 0.98494 1.06137 1.23393 0.94526 0.97871 0.91977 1.69556 1.26650 1.00756 1.20802 1.20337 0.87490 0.91227 0.90905 1.19706 1.05376 1.04946 1.12616 0.88529 1.26229 0.95762 0.96618 0.97756 1.70041 1.07955 1.24408 1.29661 0.86294 0.78897 0.81104 0.80341 1.19864 1.18439 1.18255 0.88656 0.93059 0.93160 0.85159 0.85277 0.83785 0.85780 0.85514 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.29 -5.58 9.52 -18.88 -0.18 -5.76 16 3 C 0.15 2.85 6.68 -38.70 -0.26 2.59 16 4 C -0.21 -3.43 8.80 -39.45 -0.35 -3.78 16 5 C -0.01 -0.21 6.32 -39.39 -0.25 -0.46 16 6 Cl -0.09 -1.22 28.94 -51.86 -1.50 -2.72 16 7 C -0.15 -2.43 9.80 -39.58 -0.39 -2.82 16 8 C -0.06 -1.10 7.75 -39.18 -0.30 -1.40 16 9 C 0.01 0.20 5.18 -104.75 -0.54 -0.34 16 10 C -0.03 -0.73 6.19 -80.23 -0.50 -1.22 16 11 N -0.39 -9.81 9.89 -7.86 -0.08 -9.89 16 12 C -0.13 -2.91 11.17 -17.23 -0.19 -3.10 16 13 C 0.09 2.19 11.17 -17.39 -0.19 1.99 16 14 N -0.46 -12.31 8.12 -9.56 -0.08 -12.38 16 15 C 0.23 5.95 6.67 -82.64 -0.55 5.40 16 16 C -0.40 -9.82 7.91 -37.93 -0.30 -10.12 16 17 H 0.10 2.24 5.84 -52.48 -0.31 1.93 16 18 C 0.06 1.52 5.50 -17.31 -0.10 1.43 16 19 N -0.70 -17.40 11.54 55.56 0.64 -16.76 16 20 Si 0.91 17.24 29.56 -169.99 -5.02 12.22 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 23 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 24 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 26 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 27 H 0.13 1.82 6.30 -52.49 -0.33 1.49 16 28 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.14 2.73 7.41 -52.49 -0.39 2.34 16 30 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 31 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -29.15 297.32 -7.31 -36.47 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -2.65 Total: 4.85 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.93 Total: -10.51 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.49 Total: -39.03 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.18 Total: -5.76 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.02 Total: 12.22 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.15 -7.31 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241889289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.748 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds