Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86802 * 119.99623 * 2 1 4 4 H 1.48496 * 109.47047 * 239.99314 * 3 2 1 5 5 H 1.48500 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48511 * 109.47041 * 119.99772 * 3 2 1 7 7 C 1.38636 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00130 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.35672 * 116.99874 * 185.05884 * 9 7 2 11 11 C 1.38743 * 120.13897 * 354.41168 * 10 9 7 12 12 C 1.38120 * 120.05210 * 179.97438 * 11 10 9 13 13 C 1.38437 * 120.33093 * 0.02562 * 12 11 10 14 14 C 1.38015 * 120.27399 * 359.97438 * 13 12 11 15 15 C 1.39313 * 119.93964 * 0.02562 * 14 13 12 16 16 C 1.48231 * 120.16033 * 180.02562 * 15 14 13 17 17 C 1.39379 * 120.14448 * 64.73104 * 16 15 14 18 18 C 1.37992 * 119.94498 * 179.76385 * 17 16 15 19 19 C 1.38393 * 120.25154 * 0.53121 * 18 17 16 20 20 C 1.38291 * 120.29983 * 359.69651 * 19 18 17 21 21 Cl 1.73594 * 119.97913 * 180.02562 * 20 19 18 22 22 C 1.38671 * 120.04495 * 0.04604 * 20 19 18 23 23 O 1.35882 * 120.12049 * 179.97438 * 22 20 19 24 24 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.97312 * 359.97048 * 11 10 9 26 26 H 1.08000 * 119.83468 * 180.27844 * 12 11 10 27 27 H 1.08001 * 119.86931 * 179.97438 * 13 12 11 28 28 H 1.07997 * 120.03106 * 180.02562 * 14 13 12 29 29 H 1.07994 * 120.02748 * 0.02562 * 17 16 15 30 30 H 1.08002 * 119.87143 * 180.25245 * 18 17 16 31 31 H 1.08000 * 119.85339 * 179.72142 * 19 18 17 32 32 H 0.96695 * 113.99853 * 269.97597 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2126 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0698 -3.5035 0.1087 11 6 3.4557 -3.4402 0.0942 12 6 4.2022 -4.5971 0.2039 13 6 3.5747 -5.8248 0.3281 14 6 2.1968 -5.9035 0.3440 15 6 1.4328 -4.7438 0.2342 16 6 -0.0473 -4.8226 0.2512 17 6 -0.7116 -5.2639 1.3943 18 6 -2.0898 -5.3310 1.4074 19 6 -2.8160 -4.9721 0.2853 20 6 -2.1672 -4.5373 -0.8560 21 17 -3.0864 -4.0885 -2.2586 22 6 -0.7829 -4.4600 -0.8809 23 8 -0.1439 -4.0335 -2.0017 24 1 -0.4851 0.8401 -0.0004 25 1 3.9512 -2.4855 -0.0029 26 1 5.2808 -4.5433 0.1968 27 1 4.1656 -6.7248 0.4129 28 1 1.7114 -6.8633 0.4415 29 1 -0.1483 -5.5490 2.2705 30 1 -2.6035 -5.6693 2.2952 31 1 -3.8942 -5.0314 0.3011 32 1 0.0826 -4.7424 -2.6191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242366437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = -21.909924 kcal Electronic energy + Delta-G solvation = -20369.078349 eV Core-core repulsion = 17093.608095 eV Total energy + Delta-G solvation = -3275.470254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.72722 -38.50027 -36.38208 -36.17105 -35.95015 -32.34234 -31.89452 -29.45902 -29.12766 -28.00670 -25.33134 -23.08634 -22.19369 -21.33328 -20.55525 -18.00172 -17.93248 -17.07999 -15.98429 -15.54794 -15.11925 -14.67687 -14.44581 -14.27440 -13.81178 -13.62528 -13.47603 -12.91269 -12.56755 -12.46148 -11.81478 -11.79283 -11.65828 -11.33126 -11.07323 -10.87432 -10.80606 -10.73830 -10.64492 -10.44622 -10.01519 -9.33474 -8.82456 -8.54800 -8.18545 -7.94131 -7.17538 -6.41131 -3.99415 1.46084 1.53840 2.14426 2.38245 2.54039 3.14225 3.15415 3.17991 3.92122 3.97821 4.51081 4.60024 5.08353 5.12869 5.24239 5.27667 5.55719 5.60518 5.63034 5.78309 5.96961 6.03524 6.17558 6.28463 6.42628 6.58015 6.66977 6.78174 6.85144 7.01204 7.07959 7.21774 7.34924 7.39868 7.78293 8.00270 8.17417 9.02359 9.72883 10.74917 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.007511 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.836774 B = 3727.002949 C = 5264.912981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.395 4.395 8 H 0.090 0.910 9 O -0.150 6.150 10 C 0.178 3.822 11 C -0.238 4.238 12 C -0.066 4.066 13 C -0.222 4.222 14 C -0.058 4.058 15 C -0.142 4.142 16 C -0.019 4.019 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.110 4.110 20 C -0.060 4.060 21 Cl -0.071 7.071 22 C 0.146 3.854 23 O -0.463 6.463 24 H 0.270 0.730 25 H 0.128 0.872 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 -10.678 0.090 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.108 0.892 9 O -0.051 6.051 10 C 0.122 3.878 11 C -0.257 4.257 12 C -0.084 4.084 13 C -0.241 4.241 14 C -0.076 4.076 15 C -0.144 4.144 16 C -0.020 4.020 17 C -0.114 4.114 18 C -0.141 4.141 19 C -0.129 4.129 20 C -0.087 4.087 21 Cl -0.042 7.042 22 C 0.100 3.900 23 O -0.271 6.271 24 H 0.080 0.920 25 H 0.145 0.855 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.027 -9.819 0.184 10.028 hybrid contribution 0.543 0.581 -0.350 0.869 sum -1.485 -9.238 -0.167 9.358 Atomic orbital electron populations 1.70061 1.05857 1.27678 1.44620 1.25261 0.95776 0.98714 0.96460 0.85842 0.78777 0.80016 0.79149 1.19499 1.20272 1.19534 1.21279 0.91701 0.80983 1.53151 0.89242 1.84019 1.33831 1.11076 1.76216 1.19263 0.89837 0.87495 0.91242 1.21117 0.93586 0.99107 1.11908 1.20809 0.98464 0.92390 0.96745 1.20458 0.94057 0.96957 1.12643 1.20651 0.93448 0.95684 0.97803 1.17556 0.90135 0.91466 1.15208 1.18876 0.92860 0.97412 0.92835 1.21216 0.94020 0.99048 0.97110 1.20899 0.93841 1.01652 0.97718 1.20841 0.99983 1.00417 0.91668 1.21268 0.91356 1.05564 0.90484 1.98333 1.73399 1.91535 1.40940 1.18200 0.87665 0.95720 0.88434 1.85037 1.77703 1.34718 1.29649 0.92004 0.85459 0.87538 0.87565 0.87079 0.85447 0.85413 0.85342 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 3 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.40 -11.07 9.49 30.88 0.29 -10.78 16 8 H 0.09 2.32 5.21 -52.48 -0.27 2.05 16 9 O -0.15 -4.25 8.76 0.34 0.00 -4.25 16 10 C 0.18 4.26 6.35 -38.74 -0.25 4.01 16 11 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 12 C -0.07 -1.19 10.03 -39.55 -0.40 -1.58 16 13 C -0.22 -3.73 10.03 -39.59 -0.40 -4.13 16 14 C -0.06 -1.00 9.73 -39.26 -0.38 -1.38 16 15 C -0.14 -2.94 4.95 -104.73 -0.52 -3.45 16 16 C -0.02 -0.37 4.95 -104.78 -0.52 -0.89 16 17 C -0.10 -1.62 9.73 -39.25 -0.38 -2.00 16 18 C -0.12 -1.82 10.03 -39.61 -0.40 -2.22 16 19 C -0.11 -1.73 9.82 -39.50 -0.39 -2.12 16 20 C -0.06 -1.08 6.33 -39.40 -0.25 -1.33 16 21 Cl -0.07 -1.20 28.50 -51.86 -1.48 -2.68 16 22 C 0.15 2.92 6.40 -38.84 -0.25 2.67 16 23 O -0.46 -9.48 11.96 -19.37 -0.23 -9.72 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 26 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.38 5.71 9.06 45.56 0.41 6.12 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -32.36 302.82 -7.52 -39.88 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -1.83 Total: 8.50 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -4.29 Total: -27.59 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.76 Total: -24.45 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.23 Total: -13.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.48 Total: -2.68 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.36 -7.52 -39.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242366437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.973 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds