Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86802 * 119.99623 * 2 1 4 4 H 1.48496 * 109.47047 * 239.99314 * 3 2 1 5 5 H 1.48500 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48511 * 109.47041 * 119.99772 * 3 2 1 7 7 C 1.38636 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00130 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.35672 * 116.99874 * 185.05884 * 9 7 2 11 11 C 1.38743 * 120.13897 * 354.41168 * 10 9 7 12 12 C 1.38120 * 120.05210 * 179.97438 * 11 10 9 13 13 C 1.38437 * 120.33093 * 0.02562 * 12 11 10 14 14 C 1.38015 * 120.27399 * 359.97438 * 13 12 11 15 15 C 1.39313 * 119.93964 * 0.02562 * 14 13 12 16 16 C 1.48231 * 120.16033 * 180.02562 * 15 14 13 17 17 C 1.39379 * 120.14448 * 64.73104 * 16 15 14 18 18 C 1.37992 * 119.94498 * 179.76385 * 17 16 15 19 19 C 1.38393 * 120.25154 * 0.53121 * 18 17 16 20 20 C 1.38291 * 120.29983 * 359.69651 * 19 18 17 21 21 Cl 1.73594 * 119.97913 * 180.02562 * 20 19 18 22 22 C 1.38671 * 120.04495 * 0.04604 * 20 19 18 23 23 O 1.35882 * 120.12049 * 179.97438 * 22 20 19 24 24 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.97312 * 359.97048 * 11 10 9 26 26 H 1.08000 * 119.83468 * 180.27844 * 12 11 10 27 27 H 1.08001 * 119.86931 * 179.97438 * 13 12 11 28 28 H 1.07997 * 120.03106 * 180.02562 * 14 13 12 29 29 H 1.07994 * 120.02748 * 0.02562 * 17 16 15 30 30 H 1.08002 * 119.87143 * 180.25245 * 18 17 16 31 31 H 1.08000 * 119.85339 * 179.72142 * 19 18 17 32 32 H 0.96695 * 113.99853 * 269.97597 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6965 1.2126 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0698 -3.5035 0.1087 11 6 3.4557 -3.4402 0.0942 12 6 4.2022 -4.5971 0.2039 13 6 3.5747 -5.8248 0.3281 14 6 2.1968 -5.9035 0.3440 15 6 1.4328 -4.7438 0.2342 16 6 -0.0473 -4.8226 0.2512 17 6 -0.7116 -5.2639 1.3943 18 6 -2.0898 -5.3310 1.4074 19 6 -2.8160 -4.9721 0.2853 20 6 -2.1672 -4.5373 -0.8560 21 17 -3.0864 -4.0885 -2.2586 22 6 -0.7829 -4.4600 -0.8809 23 8 -0.1439 -4.0335 -2.0017 24 1 -0.4851 0.8401 -0.0004 25 1 3.9512 -2.4855 -0.0029 26 1 5.2808 -4.5433 0.1968 27 1 4.1656 -6.7248 0.4129 28 1 1.7114 -6.8633 0.4415 29 1 -0.1483 -5.5490 2.2705 30 1 -2.6035 -5.6693 2.2952 31 1 -3.8942 -5.0314 0.3011 32 1 0.0826 -4.7424 -2.6191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242366437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = -42.713552 kcal Electronic energy + Delta-G solvation = -20369.980462 eV Core-core repulsion = 17093.608095 eV Total energy + Delta-G solvation = -3276.372367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21322 -40.06483 -38.02941 -37.59765 -37.31644 -34.26656 -33.37423 -30.80162 -30.67976 -29.49610 -27.28919 -24.50139 -23.59671 -22.92906 -22.01877 -19.75402 -19.46349 -18.73112 -17.44361 -16.96446 -16.57359 -16.34768 -16.08187 -15.76886 -15.34285 -15.17610 -15.04568 -14.45172 -14.19459 -13.83476 -13.52750 -13.16452 -13.13951 -12.90755 -12.53953 -12.42160 -12.36311 -12.22439 -12.11103 -11.99223 -11.49995 -11.07546 -10.76791 -9.96497 -9.53172 -9.39367 -8.84152 -8.41424 -6.07725 0.09417 0.20209 0.66109 0.82616 1.19027 1.32628 1.43640 1.48137 2.17954 2.60485 2.87563 3.19858 3.26278 3.55747 3.75717 4.06105 4.24022 4.30194 4.30331 4.37994 4.58636 4.66647 4.77837 4.86534 5.07415 5.14533 5.16193 5.27715 5.38459 5.47304 5.66522 5.72284 5.79953 5.84790 6.05499 6.26732 6.84796 7.02096 7.87011 8.79747 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.007511 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.836774 B = 3727.002949 C = 5264.912981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.018 4.018 3 Si 1.010 2.990 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.096 0.904 9 O -0.202 6.202 10 C 0.138 3.862 11 C -0.257 4.257 12 C -0.066 4.066 13 C -0.195 4.195 14 C -0.056 4.056 15 C -0.142 4.142 16 C -0.051 4.051 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.107 4.107 20 C -0.079 4.079 21 Cl -0.069 7.069 22 C 0.121 3.879 23 O -0.490 6.490 24 H 0.269 0.731 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.172 0.828 31 H 0.158 0.842 32 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 -13.116 1.322 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.216 4.216 3 Si 0.830 3.170 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.114 0.886 9 O -0.107 6.107 10 C 0.086 3.914 11 C -0.276 4.276 12 C -0.084 4.084 13 C -0.214 4.214 14 C -0.074 4.074 15 C -0.143 4.143 16 C -0.052 4.052 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.106 4.106 21 Cl -0.040 7.040 22 C 0.075 3.925 23 O -0.300 6.300 24 H 0.077 0.923 25 H 0.132 0.868 26 H 0.160 0.840 27 H 0.170 0.830 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.189 0.811 31 H 0.176 0.824 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.988 -12.326 1.414 12.446 hybrid contribution 0.323 0.924 -0.708 1.208 sum -0.665 -11.402 0.706 11.443 Atomic orbital electron populations 1.70222 1.07823 1.28336 1.48287 1.26444 0.96701 1.02405 0.96087 0.84774 0.77492 0.74942 0.79791 1.18488 1.19809 1.18125 1.21723 0.92265 0.81939 1.53131 0.88633 1.84001 1.34965 1.11880 1.79810 1.19900 0.91044 0.87733 0.92706 1.21258 0.93193 1.00238 1.12957 1.21211 1.00170 0.91565 0.95491 1.21063 0.94136 0.97963 1.08198 1.21123 0.93910 0.95992 0.96346 1.17967 0.91314 0.91259 1.13747 1.19096 0.92730 0.99351 0.93989 1.21524 0.95247 0.98418 0.96631 1.21384 0.93100 0.99760 0.98711 1.21292 1.01599 0.98799 0.90847 1.21510 0.91041 1.06410 0.91640 1.98322 1.73030 1.91630 1.41061 1.18481 0.88628 0.96906 0.88510 1.84995 1.78155 1.36340 1.30537 0.92257 0.86798 0.84039 0.83029 0.83482 0.83592 0.81062 0.82399 0.75111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.26 13.67 21.61 0.30 -56.97 16 2 C -0.02 -1.04 5.49 84.83 0.47 -0.58 16 3 Si 1.01 44.26 29.55 68.60 2.03 46.28 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.41 -24.55 9.49 67.91 0.64 -23.90 16 8 H 0.10 5.24 5.21 -2.91 -0.02 5.22 16 9 O -0.20 -12.10 8.76 -21.70 -0.19 -12.29 16 10 C 0.14 6.83 6.35 22.82 0.14 6.97 16 11 C -0.26 -11.22 9.16 22.36 0.20 -11.02 16 12 C -0.07 -2.21 10.03 22.29 0.22 -1.99 16 13 C -0.20 -5.67 10.03 22.26 0.22 -5.45 16 14 C -0.06 -1.77 9.73 22.48 0.22 -1.55 16 15 C -0.14 -5.80 4.95 -19.94 -0.10 -5.90 16 16 C -0.05 -2.01 4.95 -19.97 -0.10 -2.11 16 17 C -0.10 -3.21 9.73 22.49 0.22 -2.99 16 18 C -0.11 -3.01 10.03 22.25 0.22 -2.78 16 19 C -0.11 -3.16 9.82 22.32 0.22 -2.94 16 20 C -0.08 -2.87 6.33 22.39 0.14 -2.73 16 21 Cl -0.07 -2.37 28.50 -2.72 -0.08 -2.45 16 22 C 0.12 4.95 6.40 22.75 0.15 5.10 16 23 O -0.49 -21.23 11.96 -92.22 -1.10 -22.33 16 24 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.11 5.14 5.64 -2.91 -0.02 5.12 16 26 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 27 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 28 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 29 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 30 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.39 12.70 9.06 -74.06 -0.67 12.03 16 Total: -1.00 -76.43 302.82 4.33 -72.09 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.51 Total: 27.54 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 2.88 Total: -51.88 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.30 Total: -56.97 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.29 Total: -34.62 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.08 Total: -2.45 kcal Total: -76.43 4.33 -72.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242366437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.378 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds