Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35603 * 116.99468 * 2 1 4 4 N 1.32163 * 119.76363 * 0.02607 * 3 2 1 5 5 C 1.31946 * 121.79506 * 179.97438 * 4 3 2 6 6 C 1.38327 * 121.08747 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 120.30170 * 180.02562 * 6 5 4 8 8 C 1.38608 * 119.39131 * 359.70274 * 6 5 4 9 9 C 1.39606 * 118.35999 * 0.56015 * 8 6 5 10 10 C 1.48256 * 120.55824 * 179.73443 * 9 8 6 11 11 C 1.38966 * 119.62025 * 359.72647 * 10 9 8 12 12 C 1.40819 * 118.75912 * 180.02562 * 11 10 9 13 13 C 1.41531 * 120.98063 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00634 * 336.08780 * 13 12 11 15 15 C 1.40053 * 119.99639 * 156.09255 * 13 12 11 16 16 N 1.30735 * 119.99926 * 343.14686 * 15 13 12 17 17 Si 1.86797 * 119.99737 * 163.14629 * 15 13 12 18 18 H 1.48503 * 109.47374 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47428 * 119.99895 * 17 15 13 20 20 H 1.48506 * 109.46873 * 239.99873 * 17 15 13 21 21 C 1.41150 * 118.03423 * 359.97438 * 12 11 10 22 22 C 1.37721 * 119.08371 * 0.02562 * 21 12 11 23 23 N 1.31937 * 121.16525 * 359.97438 * 22 21 12 24 24 H 1.09000 * 109.46749 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47242 * 299.99181 * 1 2 3 26 26 H 1.08998 * 109.47213 * 59.99771 * 1 2 3 27 27 H 1.07999 * 119.45605 * 179.97438 * 5 4 3 28 28 H 1.07997 * 120.82124 * 180.29468 * 8 6 5 29 29 H 1.07999 * 120.61925 * 0.02562 * 11 10 9 30 30 H 0.97004 * 119.99526 * 180.02562 * 16 15 13 31 31 H 1.07999 * 120.46073 * 180.02562 * 21 12 11 32 32 H 1.08007 * 119.41612 * 179.72345 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2083 0.0000 4 7 1.3200 2.3137 0.0005 5 6 1.8769 3.5099 0.0010 6 6 3.2523 3.6574 0.0016 7 17 3.9633 5.2412 0.0030 8 6 4.0575 2.5292 0.0079 9 6 3.4428 1.2758 0.0014 10 6 4.2572 0.0369 0.0018 11 6 5.6440 0.1266 0.0028 12 6 6.3997 -1.0616 0.0026 13 6 7.8145 -1.0252 0.0041 14 1 8.3328 -0.1563 -0.3736 15 6 8.5425 -2.1160 0.4955 16 7 7.9530 -3.0119 1.2431 17 14 10.3559 -2.2909 0.0826 18 1 10.7806 -1.1540 -0.7732 19 1 11.1514 -2.2913 1.3366 20 1 10.5772 -3.5667 -0.6444 21 6 5.7045 -2.2901 0.0018 22 6 4.3273 -2.2799 0.0009 23 7 3.6529 -1.1459 0.0011 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.2485 4.3882 0.0010 28 1 5.1338 2.6176 0.0132 29 1 6.1329 1.0895 0.0038 30 1 8.4574 -3.7673 1.5837 31 1 6.2450 -3.2251 0.0021 32 1 3.7899 -3.2167 -0.0042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242505250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = 3.784770 kcal Electronic energy + Delta-G solvation = -19730.226288 eV Core-core repulsion = 16488.162990 eV Total energy + Delta-G solvation = -3242.063298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.78049 -39.98033 -38.91773 -37.42944 -36.09015 -34.34577 -32.68270 -31.95448 -30.14283 -28.24282 -27.72209 -25.39818 -24.27353 -22.90284 -22.51113 -19.62942 -19.20481 -18.21128 -17.55710 -16.96397 -16.94446 -16.39539 -16.04693 -15.95463 -15.03791 -14.91418 -14.81119 -14.44615 -14.30778 -14.18715 -13.60923 -13.21581 -13.05159 -12.93705 -12.74086 -12.59170 -12.21998 -11.98441 -11.85696 -11.78138 -11.34519 -11.13223 -10.86994 -9.99542 -9.82671 -9.79352 -8.86144 -8.69098 -6.56957 -0.36601 0.01475 0.91090 1.01263 1.10097 1.39734 1.54291 1.56660 2.18144 2.21699 2.52611 2.84002 3.16856 3.47890 3.68607 3.74805 3.85248 4.23447 4.33016 4.48344 4.48773 4.55511 4.73704 4.78115 4.91040 4.96608 5.03037 5.21315 5.23944 5.40825 5.50061 5.89721 6.15079 6.29535 6.49669 6.65845 6.78464 6.79734 7.69371 8.23985 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.004764 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.239414 B = 5875.839114 C = 7439.697539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.278 6.278 3 C 0.336 3.664 4 N -0.534 5.534 5 C 0.160 3.840 6 C -0.127 4.127 7 Cl -0.041 7.041 8 C -0.024 4.024 9 C -0.108 4.108 10 C 0.155 3.845 11 C -0.269 4.269 12 C 0.099 3.901 13 C -0.486 4.486 14 H 0.084 0.916 15 C 0.039 3.961 16 N -0.815 5.815 17 Si 0.987 3.013 18 H -0.256 1.256 19 H -0.265 1.265 20 H -0.263 1.263 21 C -0.229 4.229 22 C 0.084 3.916 23 N -0.545 5.545 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.204 0.796 28 H 0.157 0.843 29 H 0.117 0.883 30 H 0.293 0.707 31 H 0.116 0.884 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 9.543 -1.801 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.181 6.181 3 C 0.156 3.844 4 N -0.258 5.258 5 C 0.002 3.998 6 C -0.156 4.156 7 Cl -0.012 7.012 8 C -0.050 4.050 9 C -0.112 4.112 10 C 0.020 3.980 11 C -0.292 4.292 12 C 0.091 3.909 13 C -0.516 4.516 14 H 0.102 0.898 15 C -0.178 4.178 16 N -0.440 5.440 17 Si 0.807 3.193 18 H -0.179 1.179 19 H -0.189 1.189 20 H -0.188 1.188 21 C -0.252 4.252 22 C -0.069 4.069 23 N -0.259 5.259 24 H 0.130 0.870 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.221 0.779 28 H 0.174 0.826 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.301 9.014 -1.659 13.058 hybrid contribution 2.486 -0.183 0.050 2.493 sum -6.815 8.831 -1.610 11.270 Atomic orbital electron populations 1.23115 0.76885 1.04274 1.02269 1.86709 1.23113 1.22686 1.85624 1.20135 0.88693 0.85474 0.90077 1.67589 1.39365 0.98233 1.20655 1.22969 0.90857 0.94771 0.91173 1.21623 0.94407 0.87547 1.12071 1.98361 1.83775 1.21895 1.97180 1.21544 1.01680 0.88841 0.92924 1.18801 0.90647 0.93010 1.08766 1.19165 0.89986 0.90859 0.98001 1.21988 0.93282 0.98415 1.15488 1.18129 0.94434 0.91392 0.86955 1.19901 0.91103 1.03099 1.37528 0.89752 1.26843 1.05984 0.93562 0.91433 1.69814 1.40890 1.10655 1.22648 0.85085 0.75364 0.79599 0.79263 1.17928 1.18946 1.18780 1.22280 0.94539 0.99135 1.09224 1.22371 0.91628 0.95775 0.97082 1.67543 1.39914 0.97281 1.21167 0.86982 0.92142 0.92031 0.77926 0.82590 0.86496 0.89645 0.86601 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.38 113.37 1.18 1.95 16 2 O -0.28 -10.33 8.33 -89.13 -0.74 -11.07 16 3 C 0.34 12.29 7.50 85.07 0.64 12.93 16 4 N -0.53 -16.10 9.21 -308.07 -2.84 -18.94 16 5 C 0.16 3.92 10.97 84.70 0.93 4.85 16 6 C -0.13 -3.35 6.34 22.38 0.14 -3.21 16 7 Cl -0.04 -0.89 28.98 -2.72 -0.08 -0.97 16 8 C -0.02 -0.77 9.32 22.69 0.21 -0.56 16 9 C -0.11 -4.26 5.90 -19.86 -0.12 -4.38 16 10 C 0.15 7.30 6.73 41.84 0.28 7.58 16 11 C -0.27 -13.16 9.26 23.08 0.21 -12.94 16 12 C 0.10 5.26 5.60 -21.12 -0.12 5.14 16 13 C -0.49 -25.19 9.12 23.52 0.21 -24.98 16 14 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 15 C 0.04 1.88 5.20 85.30 0.44 2.32 16 16 N -0.81 -40.91 10.92 21.84 0.24 -40.67 16 17 Si 0.99 36.26 29.59 68.60 2.03 38.29 16 18 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 21 C -0.23 -12.00 8.79 22.86 0.20 -11.80 16 22 C 0.08 4.07 11.15 84.55 0.94 5.01 16 23 N -0.54 -26.54 8.14 -185.40 -1.51 -28.05 16 24 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 26 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 27 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.16 4.89 6.29 -2.91 -0.02 4.87 16 29 H 0.12 5.17 6.25 -2.91 -0.02 5.15 16 30 H 0.29 13.13 8.29 -92.71 -0.77 12.36 16 31 H 0.12 6.18 6.20 -2.91 -0.02 6.17 16 32 H 0.15 6.13 8.06 -2.91 -0.02 6.11 16 Total: -1.00 -61.28 298.14 3.43 -57.85 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 1.17 Total: 21.64 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.16 Total: -18.09 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -4.11 Total: -87.65 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.74 Total: -11.07 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -61.28 3.43 -57.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242505250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.636 kcal (2) G-P(sol) polarization free energy of solvation -61.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds