Wall clock time and date at job start Tue Mar 31 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35563 * 116.99654 * 2 1 4 4 N 1.32144 * 119.78142 * 0.27282 * 3 2 1 5 5 C 1.31958 * 121.80810 * 180.27377 * 4 3 2 6 6 C 1.38444 * 121.15693 * 359.73508 * 5 4 3 7 7 Cl 1.73597 * 120.28693 * 180.02562 * 6 5 4 8 8 C 1.38494 * 119.42180 * 359.97438 * 6 5 4 9 9 C 1.39891 * 118.34602 * 359.97438 * 8 6 5 10 10 C 1.47812 * 120.58756 * 180.02562 * 9 8 6 11 11 C 1.40341 * 120.35127 * 310.02342 * 10 9 8 12 12 C 1.36636 * 118.60194 * 179.71901 * 11 10 9 13 13 C 1.40903 * 119.26034 * 0.50199 * 12 11 10 14 14 C 1.40934 * 119.67206 * 179.76470 * 13 12 11 15 15 H 1.07999 * 120.00074 * 359.72259 * 14 13 12 16 16 C 1.40085 * 119.99956 * 179.72485 * 14 13 12 17 17 N 1.30730 * 120.00026 * 359.72528 * 16 14 13 18 18 Si 1.86795 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47317 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47320 * 120.00339 * 18 16 14 21 21 H 1.48501 * 109.47213 * 240.00199 * 18 16 14 22 22 N 1.33799 * 120.65390 * 359.48857 * 13 12 11 23 23 C 1.31175 * 121.50999 * 0.25237 * 22 13 12 24 24 H 1.09004 * 109.47048 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47705 * 299.99833 * 1 2 3 26 26 H 1.09003 * 109.47223 * 60.00377 * 1 2 3 27 27 H 1.08004 * 119.42063 * 179.72618 * 5 4 3 28 28 H 1.08003 * 120.82299 * 180.02562 * 8 6 5 29 29 H 1.08004 * 120.70310 * 0.02562 * 11 10 9 30 30 H 1.07996 * 120.36638 * 180.26488 * 12 11 10 31 31 H 0.97000 * 120.00283 * 180.02562 * 17 16 14 32 32 H 1.07999 * 119.66158 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2079 0.0000 4 7 1.3204 2.3134 0.0055 5 6 1.8774 3.5096 0.0003 6 6 3.2538 3.6588 -0.0056 7 17 3.9626 5.2435 -0.0116 8 6 4.0602 2.5329 -0.0056 9 6 3.4460 1.2760 0.0010 10 6 4.2590 0.0416 0.0018 11 6 5.2958 -0.1254 -0.9291 12 6 6.0285 -1.2781 -0.8925 13 6 5.7159 -2.2626 0.0658 14 6 6.4628 -3.4570 0.1081 15 1 7.2673 -3.6161 -0.5947 16 6 6.1617 -4.4380 1.0618 17 7 5.1914 -4.2432 1.9159 18 14 7.1512 -6.0214 1.1174 19 1 8.1886 -5.9944 0.0552 20 1 7.8042 -6.1507 2.4447 21 1 6.2468 -7.1783 0.8959 22 7 4.7207 -2.0725 0.9396 23 6 4.0029 -0.9745 0.9329 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.2485 4.3877 0.0006 28 1 5.1364 2.6230 -0.0098 29 1 5.5133 0.6433 -1.6560 30 1 6.8356 -1.4344 -1.5928 31 1 4.9832 -4.9223 2.5765 32 1 3.2061 -0.8525 1.6517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242507979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:11 Heat of formation + Delta-G solvation = 4.613514 kcal Electronic energy + Delta-G solvation = -19692.914249 eV Core-core repulsion = 16450.886888 eV Total energy + Delta-G solvation = -3242.027360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70361 -39.91045 -38.95190 -37.41551 -35.81010 -34.21247 -32.45070 -32.12530 -30.66173 -28.18470 -27.58790 -24.65180 -24.23678 -23.34316 -22.37839 -19.46565 -19.37708 -18.20654 -17.66195 -17.37457 -16.95302 -16.07712 -16.01617 -15.86070 -15.22158 -14.81261 -14.74309 -14.35130 -14.09755 -13.89418 -13.65917 -13.08064 -12.89654 -12.87895 -12.72372 -12.68890 -12.35300 -12.22223 -11.91461 -11.77323 -11.37493 -10.91324 -10.72286 -10.19738 -9.72289 -9.52447 -9.00006 -8.33918 -6.52869 -0.12809 0.07440 0.88762 1.05511 1.21068 1.41452 1.52899 1.57297 2.18679 2.21006 2.59111 2.83869 3.26311 3.77321 3.81385 3.88047 4.09146 4.18594 4.32742 4.43928 4.44167 4.61347 4.68789 4.77262 4.83794 4.90979 4.98793 5.16020 5.25403 5.48734 5.65321 5.83823 6.09134 6.21475 6.27239 6.66762 6.71574 6.91306 8.14966 8.38611 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.004078 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.861635 B = 6863.897788 C = 7729.563113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.314 6.314 3 C 0.305 3.695 4 N -0.528 5.528 5 C 0.136 3.864 6 C -0.116 4.116 7 Cl -0.046 7.046 8 C -0.044 4.044 9 C -0.060 4.060 10 C -0.255 4.255 11 C -0.034 4.034 12 C -0.285 4.285 13 C 0.222 3.778 14 C -0.451 4.451 15 H 0.095 0.905 16 C 0.021 3.979 17 N -0.747 5.747 18 Si 0.990 3.010 19 H -0.251 1.251 20 H -0.266 1.266 21 H -0.266 1.266 22 N -0.522 5.522 23 C 0.152 3.848 24 H 0.110 0.890 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.196 0.804 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.281 0.719 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.226 11.297 -2.697 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.126 3.874 4 N -0.252 5.252 5 C -0.021 4.021 6 C -0.145 4.145 7 Cl -0.017 7.017 8 C -0.070 4.070 9 C -0.064 4.064 10 C -0.261 4.261 11 C -0.057 4.057 12 C -0.308 4.308 13 C 0.098 3.902 14 C -0.481 4.481 15 H 0.113 0.887 16 C -0.201 4.201 17 N -0.368 5.368 18 Si 0.810 3.190 19 H -0.174 1.174 20 H -0.190 1.190 21 H -0.191 1.191 22 N -0.234 5.234 23 C -0.015 4.015 24 H 0.128 0.872 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.213 0.787 28 H 0.171 0.829 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.228 10.279 -1.919 12.171 hybrid contribution 1.117 0.230 -0.445 1.224 sum -5.111 10.509 -2.365 11.923 Atomic orbital electron populations 1.23069 0.76037 1.04222 1.02590 1.86372 1.24164 1.24349 1.87164 1.20230 0.89044 0.84935 0.93178 1.67426 1.39714 0.98330 1.19706 1.22795 0.90942 0.94491 0.93853 1.21719 0.94416 0.87475 1.10898 1.98357 1.83863 1.22394 1.97136 1.21591 1.01264 0.88837 0.95274 1.18727 0.89833 0.93710 1.04127 1.18851 1.04512 0.96964 1.05746 1.20887 0.92752 0.96264 0.95848 1.21584 1.06046 0.97663 1.05475 1.19113 0.89758 0.93290 0.88050 1.20116 1.14168 0.99653 1.14183 0.88706 1.27101 0.95824 1.03536 0.93687 1.70239 1.22365 1.33326 1.10834 0.85039 0.78615 0.75825 0.79539 1.17422 1.19046 1.19092 1.68734 1.08357 1.20744 1.25606 1.22760 0.95298 0.88871 0.94547 0.87214 0.91829 0.91830 0.78698 0.82869 0.85443 0.86682 0.90777 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 10.38 113.37 1.18 2.11 16 2 O -0.31 -11.48 8.90 -88.69 -0.79 -12.27 16 3 C 0.30 10.76 7.44 85.15 0.63 11.40 16 4 N -0.53 -15.80 9.21 -307.77 -2.83 -18.63 16 5 C 0.14 3.33 10.97 84.72 0.93 4.26 16 6 C -0.12 -2.95 6.33 22.38 0.14 -2.81 16 7 Cl -0.05 -0.97 28.98 -2.72 -0.08 -1.05 16 8 C -0.04 -1.34 9.49 22.73 0.22 -1.12 16 9 C -0.06 -2.21 5.51 -19.84 -0.11 -2.32 16 10 C -0.25 -11.22 5.32 -19.76 -0.11 -11.33 16 11 C -0.03 -1.47 9.62 22.41 0.22 -1.25 16 12 C -0.29 -13.73 9.76 22.55 0.22 -13.51 16 13 C 0.22 12.20 6.55 40.16 0.26 12.46 16 14 C -0.45 -24.00 9.12 23.38 0.21 -23.79 16 15 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 16 C 0.02 1.07 5.50 85.31 0.47 1.54 16 17 N -0.75 -39.99 11.44 21.85 0.25 -39.74 16 18 Si 0.99 37.07 29.56 68.60 2.03 39.10 16 19 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 20 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 22 N -0.52 -29.47 7.83 -188.18 -1.47 -30.94 16 23 C 0.15 7.61 9.99 85.26 0.85 8.47 16 24 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 25 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 26 H 0.06 1.53 8.11 -2.39 -0.02 1.51 16 27 H 0.20 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 31 H 0.28 13.52 8.29 -92.71 -0.77 12.75 16 32 H 0.12 5.70 7.73 -2.91 -0.02 5.68 16 Total: -1.00 -63.14 303.68 3.37 -59.77 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.15 Total: 19.65 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 5.12 Total: -15.88 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -4.06 Total: -89.31 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.79 Total: -12.27 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -63.14 3.37 -59.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242507979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.379 kcal (2) G-P(sol) polarization free energy of solvation -63.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds