Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47000 * 239.99769 * 3 2 1 5 5 H 1.48495 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46964 * 120.00052 * 3 2 1 7 7 C 1.38649 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.35665 * 116.99685 * 185.06030 * 9 7 2 11 11 C 1.38759 * 120.13858 * 354.40171 * 10 9 7 12 12 C 1.38112 * 120.05112 * 179.97438 * 11 10 9 13 13 C 1.38445 * 120.32387 * 359.97438 * 12 11 10 14 14 C 1.38014 * 120.27156 * 359.74669 * 13 12 11 15 15 C 1.39290 * 119.94631 * 0.50754 * 14 13 12 16 16 C 1.48278 * 120.16239 * 179.76966 * 15 14 13 17 17 C 1.39444 * 120.10621 * 64.95500 * 16 15 14 18 18 C 1.38004 * 119.99075 * 180.27411 * 17 16 15 19 19 C 1.38292 * 120.20268 * 359.74676 * 18 17 16 20 20 C 1.38746 * 120.21763 * 359.97438 * 19 18 17 21 21 O 1.35925 * 119.99809 * 180.02562 * 20 19 18 22 22 C 1.38646 * 120.00463 * 0.02562 * 20 19 18 23 23 Cl 1.73591 * 120.10301 * 179.97438 * 22 20 19 24 24 H 0.96992 * 119.99695 * 0.02562 * 1 2 3 25 25 H 1.07993 * 119.97472 * 359.95654 * 11 10 9 26 26 H 1.07994 * 119.83935 * 179.97438 * 12 11 10 27 27 H 1.07999 * 119.86725 * 179.97438 * 13 12 11 28 28 H 1.08003 * 120.03217 * 180.27557 * 14 13 12 29 29 H 1.07994 * 120.00486 * 359.97438 * 17 16 15 30 30 H 1.07993 * 119.89511 * 179.72100 * 18 17 16 31 31 H 1.08006 * 119.88944 * 179.97438 * 19 18 17 32 32 H 0.96703 * 114.00419 * 269.97639 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0696 -3.5036 0.1077 11 6 3.4556 -3.4403 0.0942 12 6 4.2019 -4.5973 0.2039 13 6 3.5741 -5.8249 0.3284 14 6 2.1963 -5.9028 0.3491 15 6 1.4325 -4.7436 0.2339 16 6 -0.0481 -4.8223 0.2505 17 6 -0.7128 -5.2545 1.3976 18 6 -2.0906 -5.3321 1.4085 19 6 -2.8163 -4.9774 0.2860 20 6 -2.1640 -4.5408 -0.8580 21 8 -2.8817 -4.1928 -1.9586 22 6 -0.7800 -4.4593 -0.8787 23 17 0.0388 -3.9140 -2.3089 24 1 -0.4849 0.8400 -0.0004 25 1 3.9512 -2.4857 -0.0025 26 1 5.2805 -4.5441 0.1926 27 1 4.1649 -6.7250 0.4133 28 1 1.7106 -6.8620 0.4508 29 1 -0.1492 -5.5330 2.2757 30 1 -2.6035 -5.6714 2.2962 31 1 -3.8944 -5.0406 0.3000 32 1 -3.0445 -4.9244 -2.5697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242800529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = -22.250884 kcal Electronic energy + Delta-G solvation = -20394.005704 eV Core-core repulsion = 17118.520665 eV Total energy + Delta-G solvation = -3275.485039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63627 -38.69446 -36.61693 -36.04302 -35.65676 -32.33755 -31.81687 -29.48849 -29.02953 -28.09030 -25.33237 -23.07696 -22.23534 -21.34291 -20.59502 -18.07381 -17.94144 -16.80811 -16.21155 -15.56942 -15.19886 -14.72518 -14.54796 -14.24101 -13.76794 -13.63756 -13.48684 -12.87504 -12.65429 -12.27248 -11.94515 -11.67915 -11.58248 -11.28305 -10.90220 -10.86106 -10.80490 -10.74330 -10.48911 -10.42920 -9.96389 -9.34259 -8.82151 -8.54231 -8.12358 -7.92953 -7.17350 -6.41212 -3.99798 1.47290 1.54416 2.17530 2.39303 2.86935 3.14294 3.15321 3.17922 3.92417 3.97582 4.37929 4.56904 5.09173 5.11981 5.24958 5.29245 5.53171 5.63071 5.64242 5.79745 5.97154 6.01070 6.19354 6.27935 6.49295 6.58922 6.68035 6.75917 6.85113 7.00577 7.08277 7.22468 7.35729 7.39985 7.79056 7.89092 8.00307 9.02331 9.71459 10.74674 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.007894 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.620798 B = 3545.958707 C = 4744.552645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.045 3.955 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.395 4.395 8 H 0.090 0.910 9 O -0.153 6.153 10 C 0.176 3.824 11 C -0.237 4.237 12 C -0.065 4.065 13 C -0.220 4.220 14 C -0.053 4.053 15 C -0.147 4.147 16 C 0.016 3.984 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.146 4.146 20 C 0.110 3.890 21 O -0.485 6.485 22 C -0.032 4.032 23 Cl -0.044 7.044 24 H 0.270 0.730 25 H 0.128 0.872 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 -10.764 0.004 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.161 4.161 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.108 0.892 9 O -0.054 6.054 10 C 0.120 3.880 11 C -0.256 4.256 12 C -0.084 4.084 13 C -0.239 4.239 14 C -0.071 4.071 15 C -0.148 4.148 16 C 0.015 3.985 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.165 4.165 20 C 0.065 3.935 21 O -0.294 6.294 22 C -0.060 4.060 23 Cl -0.015 7.015 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.838 -9.895 0.096 10.065 hybrid contribution 0.620 0.585 -0.350 0.922 sum -1.217 -9.310 -0.254 9.393 Atomic orbital electron populations 1.70052 1.05806 1.27703 1.44626 1.25244 0.95761 0.98646 0.96476 0.85859 0.78797 0.80108 0.79143 1.19536 1.20279 1.19541 1.21263 0.91705 0.80903 1.53237 0.89236 1.84009 1.33860 1.11075 1.76490 1.19249 0.89962 0.87414 0.91403 1.21103 0.93528 0.99124 1.11848 1.20812 0.98471 0.92395 0.96688 1.20464 0.94029 0.96978 1.12460 1.20619 0.93433 0.95671 0.97399 1.17631 0.90187 0.91684 1.15315 1.18412 0.92684 0.96087 0.91344 1.21185 0.94057 1.00604 0.97045 1.20896 0.93821 1.00125 0.97749 1.21221 1.00126 1.01885 0.93224 1.18069 0.87581 0.99372 0.88526 1.84920 1.73687 1.38133 1.32666 1.21485 0.91428 1.02297 0.90753 1.98359 1.78709 1.87987 1.36462 0.91979 0.85414 0.87508 0.87506 0.87017 0.85336 0.85558 0.85299 0.76262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.97 13.67 55.48 0.76 -24.21 16 2 C 0.04 1.22 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.39 -10.94 9.49 30.88 0.29 -10.64 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.15 -4.25 8.19 0.35 0.00 -4.24 16 10 C 0.18 4.20 5.90 -38.74 -0.23 3.97 16 11 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 12 C -0.07 -1.19 10.03 -39.55 -0.40 -1.59 16 13 C -0.22 -3.77 10.03 -39.59 -0.40 -4.17 16 14 C -0.05 -0.95 9.73 -39.27 -0.38 -1.33 16 15 C -0.15 -3.09 4.67 -104.73 -0.49 -3.58 16 16 C 0.02 0.32 4.95 -104.90 -0.52 -0.20 16 17 C -0.11 -1.90 9.73 -39.22 -0.38 -2.28 16 18 C -0.11 -1.61 10.03 -39.65 -0.40 -2.01 16 19 C -0.15 -2.28 9.98 -39.37 -0.39 -2.67 16 20 C 0.11 2.00 6.69 -39.24 -0.26 1.74 16 21 O -0.49 -8.02 12.96 -19.50 -0.25 -8.28 16 22 C -0.03 -0.66 6.09 -39.01 -0.24 -0.90 16 23 Cl -0.04 -0.96 26.19 -51.86 -1.36 -2.31 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 26 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.38 4.15 9.06 45.56 0.41 4.56 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -32.43 300.42 -7.42 -39.85 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -1.83 Total: 7.02 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -4.25 Total: -28.03 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.76 Total: -24.21 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.25 Total: -12.52 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.36 Total: -2.31 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.43 -7.42 -39.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242800529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.599 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds