Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47000 * 239.99769 * 3 2 1 5 5 H 1.48495 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46964 * 120.00052 * 3 2 1 7 7 C 1.38649 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.35665 * 116.99685 * 185.06030 * 9 7 2 11 11 C 1.38759 * 120.13858 * 354.40171 * 10 9 7 12 12 C 1.38112 * 120.05112 * 179.97438 * 11 10 9 13 13 C 1.38445 * 120.32387 * 359.97438 * 12 11 10 14 14 C 1.38014 * 120.27156 * 359.74669 * 13 12 11 15 15 C 1.39290 * 119.94631 * 0.50754 * 14 13 12 16 16 C 1.48278 * 120.16239 * 179.76966 * 15 14 13 17 17 C 1.39444 * 120.10621 * 64.95500 * 16 15 14 18 18 C 1.38004 * 119.99075 * 180.27411 * 17 16 15 19 19 C 1.38292 * 120.20268 * 359.74676 * 18 17 16 20 20 C 1.38746 * 120.21763 * 359.97438 * 19 18 17 21 21 O 1.35925 * 119.99809 * 180.02562 * 20 19 18 22 22 C 1.38646 * 120.00463 * 0.02562 * 20 19 18 23 23 Cl 1.73591 * 120.10301 * 179.97438 * 22 20 19 24 24 H 0.96992 * 119.99695 * 0.02562 * 1 2 3 25 25 H 1.07993 * 119.97472 * 359.95654 * 11 10 9 26 26 H 1.07994 * 119.83935 * 179.97438 * 12 11 10 27 27 H 1.07999 * 119.86725 * 179.97438 * 13 12 11 28 28 H 1.08003 * 120.03217 * 180.27557 * 14 13 12 29 29 H 1.07994 * 120.00486 * 359.97438 * 17 16 15 30 30 H 1.07993 * 119.89511 * 179.72100 * 18 17 16 31 31 H 1.08006 * 119.88944 * 179.97438 * 19 18 17 32 32 H 0.96703 * 114.00419 * 269.97639 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0696 -3.5036 0.1077 11 6 3.4556 -3.4403 0.0942 12 6 4.2019 -4.5973 0.2039 13 6 3.5741 -5.8249 0.3284 14 6 2.1963 -5.9028 0.3491 15 6 1.4325 -4.7436 0.2339 16 6 -0.0481 -4.8223 0.2505 17 6 -0.7128 -5.2545 1.3976 18 6 -2.0906 -5.3321 1.4085 19 6 -2.8163 -4.9774 0.2860 20 6 -2.1640 -4.5408 -0.8580 21 8 -2.8817 -4.1928 -1.9586 22 6 -0.7800 -4.4593 -0.8787 23 17 0.0388 -3.9140 -2.3089 24 1 -0.4849 0.8400 -0.0004 25 1 3.9512 -2.4857 -0.0025 26 1 5.2805 -4.5441 0.1926 27 1 4.1649 -6.7250 0.4133 28 1 1.7106 -6.8620 0.4508 29 1 -0.1492 -5.5330 2.2757 30 1 -2.6035 -5.6714 2.2962 31 1 -3.8944 -5.0406 0.3000 32 1 -3.0445 -4.9244 -2.5697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242800529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = -43.252382 kcal Electronic energy + Delta-G solvation = -20394.916397 eV Core-core repulsion = 17118.520665 eV Total energy + Delta-G solvation = -3276.395733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.10789 -40.20432 -38.18241 -37.47437 -37.17493 -34.25513 -33.27997 -30.90780 -30.51019 -29.57533 -27.27587 -24.49945 -23.61952 -22.93413 -22.04795 -19.75147 -19.47547 -18.46576 -17.55834 -16.97074 -16.66720 -16.29640 -16.24046 -15.76531 -15.34443 -15.11683 -15.01690 -14.41932 -14.27463 -13.73533 -13.51153 -13.27753 -12.96060 -12.87568 -12.49265 -12.40276 -12.31108 -12.24129 -12.11924 -11.91044 -11.48784 -11.07323 -10.75317 -9.97445 -9.49117 -9.40863 -8.83823 -8.40212 -6.06067 0.09351 0.21413 0.66940 0.82937 1.33180 1.39265 1.43535 1.47963 2.18082 2.61796 2.87432 3.13663 3.26379 3.54771 3.77945 4.09937 4.21063 4.24223 4.30100 4.45165 4.57280 4.69124 4.74660 4.88421 5.09350 5.16170 5.18792 5.31620 5.34523 5.47371 5.66779 5.71185 5.79751 5.85782 6.06137 6.26555 6.78461 7.03523 7.86467 8.80410 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.007894 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.620798 B = 3545.958707 C = 4744.552645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.014 4.014 3 Si 1.007 2.993 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.198 6.198 10 C 0.140 3.860 11 C -0.257 4.257 12 C -0.066 4.066 13 C -0.196 4.196 14 C -0.055 4.055 15 C -0.149 4.149 16 C -0.015 4.015 17 C -0.119 4.119 18 C -0.094 4.094 19 C -0.142 4.142 20 C 0.099 3.901 21 O -0.498 6.498 22 C -0.064 4.064 23 Cl -0.072 7.072 24 H 0.268 0.732 25 H 0.116 0.884 26 H 0.142 0.858 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 -13.137 1.304 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.213 4.213 3 Si 0.827 3.173 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.488 4.488 8 H 0.113 0.887 9 O -0.102 6.102 10 C 0.088 3.912 11 C -0.276 4.276 12 C -0.084 4.084 13 C -0.214 4.214 14 C -0.073 4.073 15 C -0.150 4.150 16 C -0.016 4.016 17 C -0.137 4.137 18 C -0.112 4.112 19 C -0.160 4.160 20 C 0.053 3.947 21 O -0.311 6.311 22 C -0.092 4.092 23 Cl -0.043 7.043 24 H 0.077 0.923 25 H 0.134 0.866 26 H 0.160 0.840 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.189 0.811 31 H 0.180 0.820 32 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.201 -12.338 1.388 12.474 hybrid contribution 0.479 0.923 -0.719 1.264 sum -0.721 -11.415 0.670 11.458 Atomic orbital electron populations 1.70209 1.07700 1.28299 1.48193 1.26365 0.96637 1.02183 0.96141 0.84819 0.77531 0.75252 0.79709 1.18638 1.19872 1.18220 1.21681 0.92221 0.81860 1.53087 0.88717 1.83998 1.34777 1.11711 1.79744 1.19822 0.91067 0.87634 0.92677 1.21260 0.93213 1.00244 1.12905 1.21216 1.00190 0.91584 0.95413 1.21053 0.94053 0.98034 1.08292 1.21095 0.93994 0.96000 0.96182 1.18048 0.91376 0.91570 1.14042 1.18660 0.92577 0.97801 0.92512 1.21489 0.95380 1.00325 0.96482 1.21401 0.92991 0.97940 0.98830 1.21650 1.01847 1.00320 0.92190 1.18368 0.86995 0.99424 0.89863 1.84852 1.73214 1.39919 1.33087 1.21804 0.92571 1.04276 0.90512 1.98330 1.79392 1.88592 1.37957 0.92270 0.86616 0.84005 0.83057 0.83651 0.83548 0.81135 0.81976 0.73658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.36 13.67 21.61 0.30 -56.06 16 2 C -0.01 -0.83 5.49 84.83 0.47 -0.37 16 3 Si 1.01 44.01 29.55 68.60 2.03 46.04 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.41 -24.03 9.49 67.92 0.64 -23.39 16 8 H 0.10 5.14 5.21 -2.91 -0.02 5.12 16 9 O -0.20 -11.58 8.19 -21.67 -0.18 -11.75 16 10 C 0.14 6.90 5.90 22.82 0.13 7.03 16 11 C -0.26 -11.26 9.16 22.36 0.20 -11.06 16 12 C -0.07 -2.25 10.03 22.29 0.22 -2.02 16 13 C -0.20 -5.91 10.03 22.27 0.22 -5.68 16 14 C -0.05 -1.81 9.73 22.47 0.22 -1.60 16 15 C -0.15 -6.24 4.67 -19.93 -0.09 -6.33 16 16 C -0.01 -0.59 4.95 -20.04 -0.10 -0.69 16 17 C -0.12 -3.85 9.73 22.50 0.22 -3.64 16 18 C -0.09 -2.51 10.03 22.23 0.22 -2.29 16 19 C -0.14 -4.08 9.98 22.40 0.22 -3.86 16 20 C 0.10 3.57 6.69 22.49 0.15 3.72 16 21 O -0.50 -16.48 12.96 -92.71 -1.20 -17.69 16 22 C -0.06 -2.71 6.09 22.64 0.14 -2.57 16 23 Cl -0.07 -3.23 26.19 -2.72 -0.07 -3.30 16 24 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.12 5.21 5.64 -2.91 -0.02 5.20 16 26 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 27 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.41 8.65 9.06 -74.06 -0.67 7.98 16 Total: -1.00 -76.27 300.42 4.26 -72.01 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.51 Total: 23.49 kcal Atomic # 6 Polarization: -55.61 SS G_CDS: 2.88 Total: -52.74 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.30 Total: -56.06 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.38 Total: -29.44 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: -3.23 SS G_CDS: -0.07 Total: -3.30 kcal Total: -76.27 4.26 -72.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242800529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.757 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds