Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86792 * 120.00122 * 2 1 4 4 H 1.48504 * 109.47131 * 239.99681 * 3 2 1 5 5 H 1.48500 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47396 * 119.99839 * 3 2 1 7 7 C 1.38652 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00152 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.35667 * 117.00271 * 185.06065 * 9 7 2 11 11 C 1.38711 * 120.11795 * 354.40746 * 10 9 7 12 12 C 1.38334 * 120.02728 * 179.97438 * 11 10 9 13 13 F 1.35093 * 119.86744 * 179.97438 * 12 11 10 14 14 C 1.38687 * 120.26856 * 359.97438 * 12 11 10 15 15 C 1.37970 * 120.24481 * 359.70574 * 14 12 11 16 16 C 1.39304 * 119.96687 * 0.57068 * 15 14 12 17 17 C 1.48277 * 120.12946 * 179.72640 * 16 15 14 18 18 C 1.39475 * 120.08631 * 129.72579 * 17 16 15 19 19 C 1.38053 * 120.03279 * 179.97438 * 18 17 16 20 20 C 1.38199 * 120.21148 * 359.97438 * 19 18 17 21 21 C 1.39039 * 120.17346 * 0.02602 * 20 19 18 22 22 S 1.76200 * 120.01658 * 180.02562 * 21 20 19 23 23 C 1.38772 * 119.96690 * 359.71681 * 21 20 19 24 24 H 0.97000 * 120.00076 * 0.02562 * 1 2 3 25 25 H 1.08008 * 119.98724 * 359.97438 * 11 10 9 26 26 H 1.07993 * 119.87571 * 180.02562 * 14 12 11 27 27 H 1.07999 * 120.01595 * 180.27701 * 15 14 12 28 28 H 1.08004 * 119.98645 * 359.97438 * 18 17 16 29 29 H 1.07997 * 119.89001 * 179.97438 * 19 18 17 30 30 H 1.08000 * 119.91349 * 180.02562 * 20 19 18 31 31 H 1.34503 * 103.00080 * 89.99520 * 22 21 20 32 32 H 1.08005 * 120.10695 * 180.30107 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3682 0.0016 10 6 2.0695 -3.5037 0.1087 11 6 3.4551 -3.4400 0.0942 12 6 4.2024 -4.5989 0.2040 13 9 5.5517 -4.5333 0.1890 14 6 3.5722 -5.8279 0.3296 15 6 2.1948 -5.9035 0.3519 16 6 1.4323 -4.7434 0.2362 17 6 -0.0484 -4.8211 0.2536 18 6 -0.7818 -3.9957 1.1057 19 6 -2.1603 -4.0686 1.1207 20 6 -2.8188 -4.9577 0.2926 21 6 -2.0962 -5.7847 -0.5602 22 16 -2.9400 -6.9163 -1.6147 23 6 -0.7105 -5.7137 -0.5851 24 1 -0.4850 0.8400 -0.0004 25 1 3.9506 -2.4853 -0.0030 26 1 4.1619 -6.7286 0.4153 27 1 1.7079 -6.8621 0.4543 28 1 -0.2711 -3.2991 1.7542 29 1 -2.7259 -3.4286 1.7817 30 1 -3.8974 -5.0105 0.3080 31 1 -3.1425 -6.1954 -2.7320 32 1 -0.1473 -6.3516 -1.2502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242863722.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = -23.047866 kcal Electronic energy + Delta-G solvation = -19818.028239 eV Core-core repulsion = 16556.925136 eV Total energy + Delta-G solvation = -3261.103103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.38583 -39.58450 -38.19936 -36.40528 -32.53230 -31.98688 -30.65142 -29.47226 -28.04188 -25.58641 -23.03113 -22.64686 -21.62098 -20.77254 -18.39633 -18.01097 -17.32906 -16.34207 -15.64642 -15.41302 -15.25518 -15.11310 -14.61205 -14.35844 -14.24897 -13.68920 -13.39049 -13.33114 -13.23644 -12.71726 -12.28127 -12.00585 -11.69926 -11.51686 -11.24801 -10.92437 -10.83478 -10.70945 -10.60532 -10.35956 -9.71759 -9.02962 -8.78003 -8.53386 -8.08058 -8.01536 -7.34638 -6.65004 -4.24136 1.21816 1.47173 1.94175 2.02593 2.07119 2.96744 3.03506 3.04071 3.06867 3.80327 4.02462 4.30652 4.75960 4.89571 5.02173 5.11872 5.25909 5.42783 5.50541 5.64809 5.75323 5.81433 5.94531 6.13828 6.23331 6.34234 6.49469 6.65615 6.72993 6.80962 6.84711 6.90315 7.02987 7.18953 7.28852 7.53243 7.77838 8.79258 9.42032 10.50556 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.006170 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.079730 B = 4536.858556 C = 6491.263586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.046 3.954 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.399 4.399 8 H 0.094 0.906 9 O -0.154 6.154 10 C 0.186 3.814 11 C -0.271 4.271 12 C 0.146 3.854 13 F -0.150 7.150 14 C -0.248 4.248 15 C -0.031 4.031 16 C -0.145 4.145 17 C -0.017 4.017 18 C -0.049 4.049 19 C -0.122 4.122 20 C -0.083 4.083 21 C -0.114 4.114 22 S -0.145 6.145 23 C -0.069 4.069 24 H 0.273 0.727 25 H 0.141 0.859 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -8.217 0.914 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.160 4.160 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.474 4.474 8 H 0.111 0.889 9 O -0.055 6.055 10 C 0.129 3.871 11 C -0.291 4.291 12 C 0.127 3.873 13 F -0.129 7.129 14 C -0.267 4.267 15 C -0.050 4.050 16 C -0.146 4.146 17 C -0.019 4.019 18 C -0.067 4.067 19 C -0.142 4.142 20 C -0.103 4.103 21 C -0.226 4.226 22 S 0.012 5.988 23 C -0.090 4.090 24 H 0.083 0.917 25 H 0.159 0.841 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.037 0.963 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.585 -8.719 0.486 9.108 hybrid contribution 1.223 2.284 -0.355 2.615 sum -1.362 -6.435 0.132 6.579 Atomic orbital electron populations 1.70022 1.05921 1.28193 1.44151 1.25299 0.95879 0.98879 0.95973 0.85770 0.78815 0.79460 0.79440 1.19353 1.20116 1.19269 1.21354 0.91976 0.80592 1.53515 0.88864 1.83992 1.33895 1.11270 1.76317 1.18955 0.88972 0.87654 0.91501 1.20994 0.94078 0.98393 1.15606 1.17540 0.75871 0.94389 0.99522 1.91421 1.30235 1.97376 1.93877 1.20475 0.94964 0.95824 1.15481 1.20564 0.92272 0.96523 0.95601 1.17824 0.91274 0.91081 1.14469 1.18553 0.91845 0.95789 0.95740 1.21500 0.93644 0.95415 0.96188 1.21072 0.94555 0.98677 0.99911 1.21440 0.99536 0.94256 0.95097 1.20902 0.95345 1.03217 1.03103 1.85697 1.76141 1.21500 1.15478 1.21559 0.92504 0.97374 0.97528 0.91672 0.84129 0.86016 0.85577 0.85055 0.85613 0.85645 0.96341 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.01 13.67 55.48 0.76 -22.25 16 2 C 0.05 1.18 5.49 -17.52 -0.10 1.08 16 3 Si 0.94 19.41 29.55 -169.99 -5.02 14.39 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.40 -10.35 9.49 30.89 0.29 -10.05 16 8 H 0.09 2.27 5.21 -52.49 -0.27 1.99 16 9 O -0.15 -3.97 8.10 0.36 0.00 -3.96 16 10 C 0.19 4.16 6.55 -38.76 -0.25 3.91 16 11 C -0.27 -5.71 9.14 -39.37 -0.36 -6.07 16 12 C 0.15 2.77 7.30 -39.38 -0.29 2.48 16 13 F -0.15 -2.75 17.26 2.25 0.04 -2.71 16 14 C -0.25 -4.17 10.01 -39.51 -0.40 -4.56 16 15 C -0.03 -0.52 9.51 -39.28 -0.37 -0.90 16 16 C -0.14 -2.84 5.48 -104.72 -0.57 -3.41 16 17 C -0.02 -0.33 5.27 -104.94 -0.55 -0.88 16 18 C -0.05 -0.94 8.78 -39.19 -0.34 -1.28 16 19 C -0.12 -2.01 10.03 -39.66 -0.40 -2.41 16 20 C -0.08 -1.26 9.78 -39.30 -0.38 -1.65 16 21 C -0.11 -1.80 6.11 -39.09 -0.24 -2.04 16 22 S -0.15 -1.98 25.77 -107.50 -2.77 -4.75 16 23 C -0.07 -1.16 9.26 -39.01 -0.36 -1.52 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.14 2.99 5.64 -52.48 -0.30 2.69 16 26 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 27 H 0.13 1.74 8.05 -52.49 -0.42 1.31 16 28 H 0.13 2.68 7.68 -52.48 -0.40 2.28 16 29 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.07 0.96 9.07 97.61 0.89 1.85 16 32 H 0.13 1.96 8.05 -52.48 -0.42 1.54 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -27.07 304.05 -8.07 -35.14 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -1.33 Total: 6.87 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -4.33 Total: -27.30 kcal Atomic # 7 Polarization: -23.01 SS G_CDS: 0.76 Total: -22.25 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: 0.00 Total: -3.96 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.77 Total: -4.75 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.07 -8.07 -35.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242863722.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.096 kcal (2) G-P(sol) polarization free energy of solvation -27.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds