Wall clock time and date at job start Tue Mar 31 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86792 * 120.00122 * 2 1 4 4 H 1.48504 * 109.47131 * 239.99681 * 3 2 1 5 5 H 1.48500 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47396 * 119.99839 * 3 2 1 7 7 C 1.38652 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00152 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.35667 * 117.00271 * 185.06065 * 9 7 2 11 11 C 1.38711 * 120.11795 * 354.40746 * 10 9 7 12 12 C 1.38334 * 120.02728 * 179.97438 * 11 10 9 13 13 F 1.35093 * 119.86744 * 179.97438 * 12 11 10 14 14 C 1.38687 * 120.26856 * 359.97438 * 12 11 10 15 15 C 1.37970 * 120.24481 * 359.70574 * 14 12 11 16 16 C 1.39304 * 119.96687 * 0.57068 * 15 14 12 17 17 C 1.48277 * 120.12946 * 179.72640 * 16 15 14 18 18 C 1.39475 * 120.08631 * 129.72579 * 17 16 15 19 19 C 1.38053 * 120.03279 * 179.97438 * 18 17 16 20 20 C 1.38199 * 120.21148 * 359.97438 * 19 18 17 21 21 C 1.39039 * 120.17346 * 0.02602 * 20 19 18 22 22 S 1.76200 * 120.01658 * 180.02562 * 21 20 19 23 23 C 1.38772 * 119.96690 * 359.71681 * 21 20 19 24 24 H 0.97000 * 120.00076 * 0.02562 * 1 2 3 25 25 H 1.08008 * 119.98724 * 359.97438 * 11 10 9 26 26 H 1.07993 * 119.87571 * 180.02562 * 14 12 11 27 27 H 1.07999 * 120.01595 * 180.27701 * 15 14 12 28 28 H 1.08004 * 119.98645 * 359.97438 * 18 17 16 29 29 H 1.07997 * 119.89001 * 179.97438 * 19 18 17 30 30 H 1.08000 * 119.91349 * 180.02562 * 20 19 18 31 31 H 1.34503 * 103.00080 * 89.99520 * 22 21 20 32 32 H 1.08005 * 120.10695 * 180.30107 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3682 0.0016 10 6 2.0695 -3.5037 0.1087 11 6 3.4551 -3.4400 0.0942 12 6 4.2024 -4.5989 0.2040 13 9 5.5517 -4.5333 0.1890 14 6 3.5722 -5.8279 0.3296 15 6 2.1948 -5.9035 0.3519 16 6 1.4323 -4.7434 0.2362 17 6 -0.0484 -4.8211 0.2536 18 6 -0.7818 -3.9957 1.1057 19 6 -2.1603 -4.0686 1.1207 20 6 -2.8188 -4.9577 0.2926 21 6 -2.0962 -5.7847 -0.5602 22 16 -2.9400 -6.9163 -1.6147 23 6 -0.7105 -5.7137 -0.5851 24 1 -0.4850 0.8400 -0.0004 25 1 3.9506 -2.4853 -0.0030 26 1 4.1619 -6.7286 0.4153 27 1 1.7079 -6.8621 0.4543 28 1 -0.2711 -3.2991 1.7542 29 1 -2.7259 -3.4286 1.7817 30 1 -3.8974 -5.0105 0.3080 31 1 -3.1425 -6.1954 -2.7320 32 1 -0.1473 -6.3516 -1.2502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242863722.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:02 Heat of formation + Delta-G solvation = -35.754555 kcal Electronic energy + Delta-G solvation = -19818.579242 eV Core-core repulsion = 16556.925136 eV Total energy + Delta-G solvation = -3261.654107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.88807 -41.13943 -39.63990 -38.00295 -34.36666 -33.42462 -31.97712 -31.02585 -29.52470 -27.42216 -24.46208 -24.07973 -23.12179 -22.20787 -20.12165 -19.45315 -18.75749 -17.61572 -17.22125 -16.98540 -16.70853 -16.63079 -16.03422 -15.95569 -15.62477 -15.37826 -15.04051 -14.68872 -14.60607 -14.18090 -13.76497 -13.50802 -13.27210 -13.00129 -12.71656 -12.41962 -12.31939 -12.19896 -12.08975 -11.67382 -11.43645 -10.84711 -10.19142 -9.84153 -9.54512 -9.14412 -8.90692 -8.52117 -6.19721 -0.15211 0.12725 0.49902 0.63772 0.74137 1.33437 1.41855 1.47337 1.84091 2.12057 2.57231 2.82229 3.05531 3.21127 3.44106 3.71352 3.94634 4.01969 4.18441 4.21586 4.35393 4.40033 4.54059 4.76678 4.83150 4.93118 5.04423 5.13515 5.24729 5.28987 5.38646 5.40168 5.49904 5.70665 5.90257 5.95324 6.02485 6.91349 7.64149 8.67369 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.006170 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.079730 B = 4536.858556 C = 6491.263586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.422 4.422 8 H 0.097 0.903 9 O -0.194 6.194 10 C 0.157 3.843 11 C -0.286 4.286 12 C 0.137 3.863 13 F -0.146 7.146 14 C -0.219 4.219 15 C -0.022 4.022 16 C -0.145 4.145 17 C -0.038 4.038 18 C -0.073 4.073 19 C -0.127 4.127 20 C -0.075 4.075 21 C -0.123 4.123 22 S -0.115 6.115 23 C -0.068 4.068 24 H 0.274 0.726 25 H 0.128 0.872 26 H 0.163 0.837 27 H 0.168 0.832 28 H 0.101 0.899 29 H 0.141 0.859 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -10.692 0.522 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.497 4.497 8 H 0.114 0.886 9 O -0.098 6.098 10 C 0.104 3.896 11 C -0.306 4.306 12 C 0.118 3.882 13 F -0.124 7.124 14 C -0.238 4.238 15 C -0.040 4.040 16 C -0.147 4.147 17 C -0.040 4.040 18 C -0.091 4.091 19 C -0.146 4.146 20 C -0.096 4.096 21 C -0.235 4.235 22 S 0.042 5.958 23 C -0.089 4.089 24 H 0.083 0.917 25 H 0.146 0.854 26 H 0.181 0.819 27 H 0.185 0.815 28 H 0.119 0.881 29 H 0.159 0.841 30 H 0.173 0.827 31 H 0.039 0.961 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.492 -11.243 0.100 11.516 hybrid contribution 1.241 2.708 -0.229 2.988 sum -1.250 -8.535 -0.129 8.627 Atomic orbital electron populations 1.70147 1.07541 1.28911 1.46975 1.26373 0.96768 1.02109 0.95473 0.84777 0.77604 0.74977 0.79760 1.18631 1.19429 1.18396 1.21719 0.92399 0.81485 1.54130 0.88584 1.83985 1.34703 1.11878 1.79279 1.19472 0.89706 0.88038 0.92429 1.21033 0.94018 0.99060 1.16465 1.17649 0.76074 0.94540 0.99953 1.91432 1.29772 1.97382 1.93851 1.20978 0.95265 0.96149 1.11396 1.21035 0.92209 0.97075 0.93684 1.18233 0.92357 0.90938 1.13140 1.18620 0.91552 0.96972 0.96879 1.21409 0.94932 0.95729 0.97027 1.21277 0.93650 0.99239 1.00482 1.21785 1.00977 0.93001 0.93808 1.21189 0.95365 1.03468 1.03453 1.85599 1.75339 1.20023 1.14813 1.21718 0.93204 0.96925 0.97012 0.91698 0.85444 0.81932 0.81490 0.88124 0.84106 0.82708 0.96061 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.50 13.67 21.61 0.30 -51.21 16 2 C -0.01 -0.37 5.49 84.83 0.47 0.09 16 3 Si 1.01 41.25 29.55 68.60 2.03 43.28 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.42 -23.24 9.49 67.92 0.64 -22.60 16 8 H 0.10 4.98 5.21 -2.91 -0.02 4.97 16 9 O -0.19 -10.71 8.10 -21.63 -0.18 -10.88 16 10 C 0.16 7.31 6.55 22.80 0.15 7.46 16 11 C -0.29 -12.38 9.14 22.41 0.20 -12.18 16 12 C 0.14 5.01 7.30 22.40 0.16 5.18 16 13 F -0.15 -5.09 17.26 44.97 0.78 -4.32 16 14 C -0.22 -6.57 10.01 22.31 0.22 -6.35 16 15 C -0.02 -0.68 9.51 22.46 0.21 -0.46 16 16 C -0.15 -5.66 5.48 -19.93 -0.11 -5.77 16 17 C -0.04 -1.44 5.27 -20.07 -0.11 -1.55 16 18 C -0.07 -2.87 8.78 22.52 0.20 -2.67 16 19 C -0.13 -4.19 10.03 22.22 0.22 -3.97 16 20 C -0.08 -2.17 9.78 22.45 0.22 -1.95 16 21 C -0.12 -3.62 6.11 22.59 0.14 -3.48 16 22 S -0.11 -2.77 25.77 -56.49 -1.46 -4.22 16 23 C -0.07 -2.18 9.26 22.64 0.21 -1.97 16 24 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.13 5.74 5.64 -2.91 -0.02 5.72 16 26 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 27 H 0.17 3.76 8.05 -2.91 -0.02 3.74 16 28 H 0.10 4.51 7.68 -2.91 -0.02 4.49 16 29 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 31 H 0.08 1.78 9.07 73.35 0.67 2.44 16 32 H 0.15 4.04 8.05 -2.91 -0.02 4.01 16 Total: -1.00 -62.27 304.05 6.15 -56.12 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.84 Total: 21.44 kcal Atomic # 6 Polarization: -53.05 SS G_CDS: 2.84 Total: -50.21 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.30 Total: -51.21 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.18 Total: -10.88 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.78 Total: -4.32 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -1.46 Total: -4.22 kcal Total: -62.27 6.15 -56.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242863722.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.367 kcal (2) G-P(sol) polarization free energy of solvation -62.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds