Wall clock time and date at job start Tue Mar 31 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35601 * 116.99991 * 2 1 4 4 N 1.32374 * 119.53175 * 359.97438 * 3 2 1 5 5 C 1.31698 * 121.81360 * 179.97438 * 4 3 2 6 6 C 1.39554 * 120.64412 * 0.02562 * 5 4 3 7 7 C 1.47862 * 120.49144 * 179.97438 * 6 5 4 8 8 C 1.39966 * 119.45607 * 4.72487 * 7 6 5 9 9 C 1.36558 * 119.46560 * 179.76451 * 8 7 6 10 10 C 1.41328 * 118.41904 * 0.49864 * 9 8 7 11 11 C 1.41038 * 120.54922 * 179.72537 * 10 9 8 12 12 H 1.08002 * 120.00037 * 203.73211 * 11 10 9 13 13 C 1.39993 * 119.99804 * 23.72530 * 11 10 9 14 14 N 1.30810 * 120.00170 * 17.63162 * 13 11 10 15 15 Si 1.86808 * 119.99887 * 197.62816 * 13 11 10 16 16 H 1.48498 * 109.46911 * 60.00129 * 15 13 11 17 17 H 1.48494 * 109.46977 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47085 * 300.00501 * 15 13 11 19 19 C 1.40951 * 118.90339 * 359.74282 * 10 9 8 20 20 N 1.31259 * 120.40020 * 0.02562 * 19 10 9 21 21 C 1.40191 * 119.01291 * 359.97438 * 6 5 4 22 22 C 1.38128 * 118.34829 * 359.75314 * 21 6 5 23 23 Cl 1.73597 * 120.37801 * 180.24002 * 22 21 6 24 24 H 1.09000 * 109.47142 * 60.00627 * 1 2 3 25 25 H 1.09008 * 109.46998 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47150 * 299.99895 * 1 2 3 27 27 H 1.07999 * 119.67270 * 180.02562 * 5 4 3 28 28 H 1.07999 * 120.26453 * 0.02562 * 8 7 6 29 29 H 1.07993 * 120.79278 * 180.24244 * 9 8 7 30 30 H 0.96997 * 119.99451 * 179.97438 * 14 13 11 31 31 H 1.07999 * 119.79856 * 179.97438 * 19 10 9 32 32 H 1.08000 * 120.82406 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3146 2.3125 -0.0005 5 6 1.8653 3.5088 0.0000 6 6 3.2534 3.6529 0.0005 7 6 3.8681 4.9977 0.0005 8 6 3.0495 6.1286 0.1003 9 6 3.6174 7.3705 0.1051 10 6 5.0232 7.4677 -0.0026 11 6 5.6563 8.7280 -0.0080 12 1 6.6312 8.8406 -0.4589 13 6 5.0210 9.8329 0.5710 14 7 4.0293 9.6543 1.4051 15 14 5.5895 11.5625 0.1524 16 1 5.4462 11.7908 -1.3079 17 1 4.7609 12.5483 0.8917 18 1 7.0137 11.7231 0.5411 19 6 5.7821 6.2843 -0.1048 20 7 5.1898 5.1130 -0.1003 21 6 4.0562 2.5036 0.0011 22 6 3.4353 1.2698 0.0063 23 17 4.3785 -0.1876 0.0136 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.2365 4.3868 -0.0001 28 1 1.9778 6.0198 0.1771 29 1 3.0065 8.2574 0.1851 30 1 3.5894 10.4200 1.8065 31 1 6.8573 6.3418 -0.1882 32 1 5.1335 2.5811 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242929766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:05 Heat of formation + Delta-G solvation = -3.287464 kcal Electronic energy + Delta-G solvation = -19276.310114 eV Core-core repulsion = 16033.940141 eV Total energy + Delta-G solvation = -3242.369973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70657 -40.24035 -38.79313 -37.59736 -36.12859 -33.74876 -32.93705 -32.42634 -30.70241 -28.39147 -27.16209 -24.88852 -24.57879 -23.03517 -22.46579 -19.55492 -19.30831 -18.28807 -17.94178 -17.17097 -17.09953 -16.40830 -16.00365 -15.45647 -15.24303 -15.13487 -14.91548 -14.40233 -14.20573 -13.85000 -13.53674 -13.31164 -13.22594 -13.02152 -12.78631 -12.71588 -12.30120 -12.15330 -12.09227 -11.78782 -11.28632 -10.83276 -10.81568 -10.26419 -10.02908 -9.92629 -9.00741 -8.75178 -6.44424 -0.28259 -0.00718 0.89462 1.01157 1.11169 1.40757 1.51898 1.56653 2.01522 2.15619 2.47223 2.83086 3.25300 3.53611 3.72431 3.91051 3.96501 4.06093 4.42502 4.47523 4.49962 4.56618 4.69205 4.78207 4.80758 4.98560 5.10366 5.21385 5.24168 5.33684 5.73943 5.87519 5.97599 6.11904 6.43064 6.63422 6.64939 6.72967 7.63606 8.12436 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.035031 B = 0.003375 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.091228 B = 8294.093282 C = 8996.878036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.301 3.699 4 N -0.519 5.519 5 C 0.135 3.865 6 C -0.070 4.070 7 C -0.009 4.009 8 C -0.121 4.121 9 C -0.161 4.161 10 C 0.044 3.956 11 C -0.459 4.459 12 H 0.093 0.907 13 C 0.036 3.964 14 N -0.801 5.801 15 Si 0.989 3.011 16 H -0.258 1.258 17 H -0.266 1.266 18 H -0.257 1.257 19 C -0.033 4.033 20 N -0.459 5.459 21 C -0.032 4.032 22 C -0.107 4.107 23 Cl -0.044 7.044 24 H 0.059 0.941 25 H 0.126 0.874 26 H 0.058 0.942 27 H 0.185 0.815 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.297 0.703 31 H 0.140 0.860 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -8.720 -1.647 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.215 6.215 3 C 0.121 3.879 4 N -0.242 5.242 5 C -0.023 4.023 6 C -0.074 4.074 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.186 4.186 10 C 0.039 3.961 11 C -0.487 4.487 12 H 0.111 0.889 13 C -0.183 4.183 14 N -0.424 5.424 15 Si 0.809 3.191 16 H -0.182 1.182 17 H -0.191 1.191 18 H -0.181 1.181 19 C -0.198 4.198 20 N -0.167 5.167 21 C -0.059 4.059 22 C -0.136 4.136 23 Cl -0.015 7.015 24 H 0.077 0.923 25 H 0.144 0.856 26 H 0.077 0.923 27 H 0.202 0.798 28 H 0.152 0.848 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.157 0.843 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.072 -9.870 -1.534 11.689 hybrid contribution 0.604 1.669 0.108 1.778 sum -5.469 -8.201 -1.426 9.959 Atomic orbital electron populations 1.23129 0.75456 1.04872 1.02489 1.86250 1.24589 1.23039 1.87616 1.19606 0.87694 0.85954 0.94629 1.67451 1.39061 0.98257 1.19415 1.22853 0.91729 0.94068 0.93613 1.19435 0.93771 0.91917 1.02227 1.18825 0.89379 0.91086 1.15141 1.21534 1.00092 0.92662 0.99756 1.21376 0.94980 0.96876 1.05355 1.18926 0.93269 0.94525 0.89370 1.19978 1.04632 0.92890 1.31201 0.88934 1.26926 0.93656 1.05934 0.91743 1.69803 1.18237 1.35983 1.18424 0.85121 0.79604 0.74602 0.79780 1.18230 1.19055 1.18105 1.22633 0.98871 0.87156 1.11101 1.66908 1.11330 1.28805 1.09615 1.21470 1.01675 0.88652 0.94066 1.20776 0.89540 0.89587 1.13722 1.98338 1.71573 1.34454 1.97124 0.92263 0.85585 0.92325 0.79793 0.84829 0.86111 0.89133 0.84257 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.37 113.37 1.18 1.85 16 2 O -0.31 -8.42 9.93 -89.11 -0.89 -9.30 16 3 C 0.30 9.45 7.49 84.85 0.64 10.09 16 4 N -0.52 -16.24 9.18 -307.64 -2.82 -19.06 16 5 C 0.13 4.34 10.58 85.03 0.90 5.24 16 6 C -0.07 -2.61 5.89 -19.94 -0.12 -2.73 16 7 C -0.01 -0.40 6.73 41.93 0.28 -0.12 16 8 C -0.12 -5.15 9.38 22.30 0.21 -4.94 16 9 C -0.16 -7.71 8.74 22.64 0.20 -7.51 16 10 C 0.04 2.19 5.59 -21.17 -0.12 2.07 16 11 C -0.46 -22.07 9.06 23.38 0.21 -21.86 16 12 H 0.09 4.19 7.91 -2.91 -0.02 4.16 16 13 C 0.04 1.62 5.17 85.27 0.44 2.06 16 14 N -0.80 -37.15 10.92 21.84 0.24 -36.91 16 15 Si 0.99 33.45 29.60 68.60 2.03 35.48 16 16 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 17 H -0.27 -8.54 7.11 99.48 0.71 -7.84 16 18 H -0.26 -8.46 7.11 99.48 0.71 -7.76 16 19 C -0.03 -1.58 10.97 85.44 0.94 -0.64 16 20 N -0.46 -21.42 9.47 -182.73 -1.73 -23.15 16 21 C -0.03 -1.14 9.48 22.72 0.22 -0.93 16 22 C -0.11 -3.46 6.35 22.48 0.14 -3.31 16 23 Cl -0.04 -1.24 28.52 -2.72 -0.08 -1.32 16 24 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 25 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 27 H 0.19 5.08 6.19 -2.91 -0.02 5.07 16 28 H 0.13 4.68 6.20 -2.91 -0.02 4.66 16 29 H 0.12 5.87 6.19 -2.91 -0.02 5.86 16 30 H 0.30 12.34 8.30 -92.71 -0.77 11.57 16 31 H 0.14 6.16 8.06 -2.91 -0.02 6.14 16 32 H 0.15 5.42 7.62 -2.91 -0.02 5.40 16 Total: -1.00 -54.87 299.56 3.04 -51.84 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.17 Total: 23.17 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 5.11 Total: -20.74 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -4.32 Total: -79.13 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.89 Total: -9.30 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.48 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -54.87 3.04 -51.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242929766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.550 kcal (2) G-P(sol) polarization free energy of solvation -54.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds