Wall clock time and date at job start Tue Mar 31 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35655 * 116.99951 * 2 1 4 4 N 1.32304 * 119.55929 * 0.02562 * 3 2 1 5 5 C 1.31775 * 121.78874 * 180.02562 * 4 3 2 6 6 C 1.39237 * 120.69041 * 359.97379 * 5 4 3 7 7 C 1.48333 * 120.47601 * 180.02562 * 6 5 4 8 8 C 1.40052 * 120.82763 * 180.02562 * 7 6 5 9 9 C 1.38481 * 119.42631 * 179.97438 * 8 7 6 10 10 N 1.31492 * 121.14604 * 359.97438 * 9 8 7 11 11 C 1.33658 * 121.79737 * 0.02562 * 10 9 8 12 12 C 1.41430 * 119.77447 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00137 * 180.02562 * 12 11 10 14 14 C 1.40037 * 120.00173 * 359.72274 * 12 11 10 15 15 N 1.30744 * 119.99612 * 0.27901 * 14 12 11 16 16 Si 1.86803 * 120.00055 * 180.27344 * 14 12 11 17 17 H 1.48508 * 109.46742 * 90.00453 * 16 14 12 18 18 H 1.48494 * 109.46953 * 210.00407 * 16 14 12 19 19 H 1.48499 * 109.47135 * 330.00651 * 16 14 12 20 20 C 1.39348 * 120.82099 * 0.25375 * 7 6 5 21 21 C 1.39907 * 119.05339 * 0.29758 * 6 5 4 22 22 C 1.38258 * 118.36643 * 359.46321 * 21 6 5 23 23 Cl 1.73603 * 120.39073 * 180.24078 * 22 21 6 24 24 H 1.08995 * 109.47308 * 299.99557 * 1 2 3 25 25 H 1.09002 * 109.47477 * 59.99993 * 1 2 3 26 26 H 1.09008 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.65785 * 180.02562 * 5 4 3 28 28 H 1.08007 * 120.28812 * 359.96832 * 8 7 6 29 29 H 1.07996 * 119.42426 * 180.02562 * 9 8 7 30 30 H 0.97000 * 119.99125 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.58324 * 0.02562 * 20 7 6 32 32 H 1.07997 * 120.81751 * 179.72470 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 7 1.3157 2.3127 0.0005 5 6 1.8678 3.5092 0.0000 6 6 3.2527 3.6528 -0.0005 7 6 3.8692 5.0020 -0.0005 8 6 5.2613 5.1550 -0.0015 9 6 5.8058 6.4283 -0.0020 10 7 5.0385 7.4961 -0.0020 11 6 3.7051 7.4052 -0.0010 12 6 2.9208 8.5821 -0.0004 13 1 1.8430 8.5129 0.0008 14 6 3.5417 9.8373 0.0049 15 7 4.8465 9.9211 0.0039 16 14 2.5059 11.3918 0.0133 17 1 2.2329 11.7970 1.4157 18 1 3.2396 12.4793 -0.6823 19 1 1.2216 11.1346 -0.6865 20 6 3.0775 6.1487 0.0054 21 6 4.0547 2.5064 -0.0069 22 6 3.4344 1.2708 -0.0010 23 17 4.3787 -0.1859 -0.0022 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.2395 4.3877 0.0009 28 1 5.9047 4.2875 -0.0019 29 1 6.8793 6.5462 -0.0032 30 1 5.2765 10.7905 0.0072 31 1 2.0002 6.0726 0.0104 32 1 5.1318 2.5847 -0.0119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242934181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:37 Heat of formation + Delta-G solvation = 24.123522 kcal Electronic energy + Delta-G solvation = -19334.090141 eV Core-core repulsion = 16092.908798 eV Total energy + Delta-G solvation = -3241.181343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62320 -38.55734 -37.58869 -36.52981 -33.92783 -32.77702 -31.69399 -30.09763 -28.94270 -27.19399 -25.85023 -23.85638 -23.29097 -21.27549 -20.78347 -18.50197 -17.66395 -17.12893 -16.11565 -15.85514 -15.36401 -15.20097 -14.47259 -14.10702 -13.79828 -13.74850 -13.62925 -13.16141 -12.65151 -12.40035 -12.07728 -11.95970 -11.82823 -11.39077 -11.25528 -11.17729 -11.14826 -10.80781 -10.58835 -10.02132 -9.95358 -9.59830 -9.40895 -8.87099 -7.79268 -7.69533 -7.56651 -6.50699 -4.64462 0.92842 1.12534 2.09594 2.65489 2.85896 2.98025 3.04155 3.06564 3.11873 3.87352 3.90556 4.34647 4.67452 4.78777 5.01155 5.11777 5.21542 5.23749 5.35254 5.53715 5.78574 5.79339 5.96007 6.11022 6.22164 6.44422 6.57560 6.76349 7.01272 7.10065 7.18013 7.36948 7.51285 7.74355 7.87738 8.11164 8.53256 8.78622 9.99238 10.21262 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.003643 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.807507 B = 7683.565649 C = 8669.220946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.313 3.687 4 N -0.522 5.522 5 C 0.146 3.854 6 C -0.086 4.086 7 C 0.004 3.996 8 C -0.306 4.306 9 C 0.129 3.871 10 N -0.481 5.481 11 C 0.255 3.745 12 C -0.428 4.428 13 H 0.085 0.915 14 C 0.068 3.932 15 N -0.712 5.712 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.253 4.253 21 C -0.031 4.031 22 C -0.104 4.104 23 Cl -0.054 7.054 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.172 0.828 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.274 0.726 31 H 0.104 0.896 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -12.547 -0.005 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.133 3.867 4 N -0.245 5.245 5 C -0.010 4.010 6 C -0.089 4.089 7 C -0.002 4.002 8 C -0.329 4.329 9 C -0.037 4.037 10 N -0.194 5.194 11 C 0.130 3.870 12 C -0.459 4.459 13 H 0.103 0.897 14 C -0.158 4.158 15 N -0.333 5.333 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.185 1.185 20 C -0.276 4.276 21 C -0.057 4.057 22 C -0.134 4.134 23 Cl -0.025 7.025 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.189 0.811 28 H 0.115 0.885 29 H 0.139 0.861 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.438 -12.029 -0.009 12.822 hybrid contribution -0.011 -0.143 0.013 0.145 sum -4.449 -12.173 0.005 12.960 Atomic orbital electron populations 1.22859 0.77247 1.02791 1.02589 1.86267 1.22793 1.23899 1.87799 1.19481 0.87590 0.85521 0.94080 1.67445 1.39367 0.98423 1.19293 1.22790 0.92692 0.93370 0.92121 1.19879 0.93472 0.93968 1.01579 1.18281 0.93517 0.89151 0.99290 1.21294 0.93405 0.97925 1.20303 1.22464 0.98929 0.88488 0.93777 1.68741 1.05011 1.29073 1.16574 1.18533 0.88788 0.91165 0.88468 1.19661 0.94239 0.89462 1.42571 0.89658 1.26082 0.95133 1.00975 0.93572 1.70128 1.09421 1.25795 1.27994 0.86314 0.80698 0.80467 0.79320 1.19330 1.20049 1.18459 1.21815 0.98224 0.92798 1.14734 1.21532 1.01579 0.88665 0.93941 1.20736 0.89199 0.89471 1.13994 1.98350 1.71670 1.35333 1.97180 0.92232 0.92239 0.88699 0.81100 0.88473 0.86104 0.91455 0.87805 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.30 -4.15 9.93 -18.67 -0.19 -4.33 16 3 C 0.31 4.83 7.49 -17.03 -0.13 4.70 16 4 N -0.52 -8.24 9.19 -13.02 -0.12 -8.36 16 5 C 0.15 2.38 10.61 -17.20 -0.18 2.20 16 6 C -0.09 -1.51 5.89 -104.75 -0.62 -2.13 16 7 C 0.00 0.09 5.91 -104.65 -0.62 -0.53 16 8 C -0.31 -6.36 9.53 -38.81 -0.37 -6.73 16 9 C 0.13 2.96 11.17 -17.61 -0.20 2.76 16 10 N -0.48 -12.69 7.85 -11.21 -0.09 -12.78 16 11 C 0.25 6.59 6.55 -85.02 -0.56 6.04 16 12 C -0.43 -10.89 9.14 -37.69 -0.34 -11.24 16 13 H 0.09 2.00 7.85 -52.49 -0.41 1.59 16 14 C 0.07 1.67 5.50 -17.34 -0.10 1.57 16 15 N -0.71 -18.32 11.46 55.55 0.64 -17.68 16 16 Si 0.91 17.83 29.56 -169.99 -5.02 12.81 16 17 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 18 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 C -0.25 -5.71 9.23 -38.34 -0.35 -6.07 16 21 C -0.03 -0.49 9.35 -38.95 -0.36 -0.86 16 22 C -0.10 -1.59 6.35 -39.25 -0.25 -1.83 16 23 Cl -0.05 -0.72 28.53 -51.86 -1.48 -2.20 16 24 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.17 2.57 6.30 -52.49 -0.33 2.24 16 28 H 0.10 1.73 6.38 -52.48 -0.34 1.40 16 29 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 30 H 0.27 6.38 8.29 -40.82 -0.34 6.04 16 31 H 0.10 2.09 6.35 -52.49 -0.33 1.76 16 32 H 0.15 2.21 6.40 -52.49 -0.34 1.87 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -28.13 298.90 -7.35 -35.48 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.57 Total: 3.22 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.03 Total: -10.66 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.43 Total: -38.82 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.19 Total: -4.33 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.81 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.13 -7.35 -35.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242934181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.608 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds