Wall clock time and date at job start Tue Mar 31 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35655 * 116.99951 * 2 1 4 4 N 1.32304 * 119.55929 * 0.02562 * 3 2 1 5 5 C 1.31775 * 121.78874 * 180.02562 * 4 3 2 6 6 C 1.39237 * 120.69041 * 359.97379 * 5 4 3 7 7 C 1.48333 * 120.47601 * 180.02562 * 6 5 4 8 8 C 1.40052 * 120.82763 * 180.02562 * 7 6 5 9 9 C 1.38481 * 119.42631 * 179.97438 * 8 7 6 10 10 N 1.31492 * 121.14604 * 359.97438 * 9 8 7 11 11 C 1.33658 * 121.79737 * 0.02562 * 10 9 8 12 12 C 1.41430 * 119.77447 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00137 * 180.02562 * 12 11 10 14 14 C 1.40037 * 120.00173 * 359.72274 * 12 11 10 15 15 N 1.30744 * 119.99612 * 0.27901 * 14 12 11 16 16 Si 1.86803 * 120.00055 * 180.27344 * 14 12 11 17 17 H 1.48508 * 109.46742 * 90.00453 * 16 14 12 18 18 H 1.48494 * 109.46953 * 210.00407 * 16 14 12 19 19 H 1.48499 * 109.47135 * 330.00651 * 16 14 12 20 20 C 1.39348 * 120.82099 * 0.25375 * 7 6 5 21 21 C 1.39907 * 119.05339 * 0.29758 * 6 5 4 22 22 C 1.38258 * 118.36643 * 359.46321 * 21 6 5 23 23 Cl 1.73603 * 120.39073 * 180.24078 * 22 21 6 24 24 H 1.08995 * 109.47308 * 299.99557 * 1 2 3 25 25 H 1.09002 * 109.47477 * 59.99993 * 1 2 3 26 26 H 1.09008 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.65785 * 180.02562 * 5 4 3 28 28 H 1.08007 * 120.28812 * 359.96832 * 8 7 6 29 29 H 1.07996 * 119.42426 * 180.02562 * 9 8 7 30 30 H 0.97000 * 119.99125 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.58324 * 0.02562 * 20 7 6 32 32 H 1.07997 * 120.81751 * 179.72470 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 7 1.3157 2.3127 0.0005 5 6 1.8678 3.5092 0.0000 6 6 3.2527 3.6528 -0.0005 7 6 3.8692 5.0020 -0.0005 8 6 5.2613 5.1550 -0.0015 9 6 5.8058 6.4283 -0.0020 10 7 5.0385 7.4961 -0.0020 11 6 3.7051 7.4052 -0.0010 12 6 2.9208 8.5821 -0.0004 13 1 1.8430 8.5129 0.0008 14 6 3.5417 9.8373 0.0049 15 7 4.8465 9.9211 0.0039 16 14 2.5059 11.3918 0.0133 17 1 2.2329 11.7970 1.4157 18 1 3.2396 12.4793 -0.6823 19 1 1.2216 11.1346 -0.6865 20 6 3.0775 6.1487 0.0054 21 6 4.0547 2.5064 -0.0069 22 6 3.4344 1.2708 -0.0010 23 17 4.3787 -0.1859 -0.0022 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.2395 4.3877 0.0009 28 1 5.9047 4.2875 -0.0019 29 1 6.8793 6.5462 -0.0032 30 1 5.2765 10.7905 0.0072 31 1 2.0002 6.0726 0.0104 32 1 5.1318 2.5847 -0.0119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242934181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:36 Heat of formation + Delta-G solvation = 7.303661 kcal Electronic energy + Delta-G solvation = -19334.819505 eV Core-core repulsion = 16092.908798 eV Total energy + Delta-G solvation = -3241.910707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.84621 -40.10858 -38.89457 -37.65954 -35.63281 -34.28064 -33.02753 -31.85474 -30.31743 -28.28837 -27.55782 -25.24611 -24.60118 -22.90394 -22.39824 -19.65099 -19.33360 -18.38761 -17.47495 -17.18638 -16.79301 -16.68673 -15.96509 -15.52125 -15.20920 -15.05836 -14.89599 -14.49197 -14.26339 -14.10574 -13.44962 -13.12512 -12.92920 -12.87224 -12.77676 -12.64683 -12.33406 -12.25978 -12.09895 -11.67328 -11.37231 -11.02852 -10.87714 -10.24909 -9.58980 -9.49526 -9.02468 -8.28326 -6.51080 -0.38225 -0.12061 0.91114 0.93885 1.27528 1.43369 1.55029 1.57788 1.91867 2.24390 2.55048 2.91195 3.15357 3.49504 3.77726 3.89682 3.96654 4.01520 4.28548 4.41226 4.43519 4.51215 4.64228 4.76924 4.79572 4.87964 5.07454 5.15386 5.25143 5.46715 5.61851 5.82659 5.99724 6.10973 6.28901 6.54805 6.73851 6.95411 8.20373 8.46409 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.003643 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.807507 B = 7683.565649 C = 8669.220946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.305 6.305 3 C 0.317 3.683 4 N -0.526 5.526 5 C 0.152 3.848 6 C -0.110 4.110 7 C 0.011 3.989 8 C -0.298 4.298 9 C 0.108 3.892 10 N -0.522 5.522 11 C 0.225 3.775 12 C -0.467 4.467 13 H 0.092 0.908 14 C 0.025 3.975 15 N -0.756 5.756 16 Si 0.985 3.015 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.269 4.269 21 C -0.021 4.021 22 C -0.112 4.112 23 Cl -0.036 7.036 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.128 0.872 27 H 0.179 0.821 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.278 0.722 31 H 0.120 0.880 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -14.335 -0.011 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.137 3.863 4 N -0.250 5.250 5 C -0.004 4.004 6 C -0.112 4.112 7 C 0.004 3.996 8 C -0.320 4.320 9 C -0.056 4.056 10 N -0.236 5.236 11 C 0.100 3.900 12 C -0.499 4.499 13 H 0.110 0.890 14 C -0.197 4.197 15 N -0.378 5.378 16 Si 0.805 3.195 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.292 4.292 21 C -0.047 4.047 22 C -0.141 4.141 23 Cl -0.007 7.007 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.196 0.804 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.323 -13.860 -0.015 14.847 hybrid contribution 0.259 0.063 0.016 0.267 sum -5.064 -13.797 0.002 14.697 Atomic orbital electron populations 1.23164 0.75270 1.05065 1.02574 1.86282 1.24746 1.22928 1.87178 1.19738 0.87999 0.85960 0.92622 1.67508 1.39326 0.98316 1.19828 1.22891 0.92427 0.93934 0.91142 1.19668 0.94138 0.92845 1.04585 1.18524 0.93520 0.90271 0.97239 1.21650 0.94078 0.98231 1.18068 1.22896 0.99801 0.88950 0.93971 1.68667 1.05738 1.30973 1.18202 1.18963 0.89164 0.92716 0.89175 1.20031 0.94788 0.90482 1.44562 0.88954 1.26975 0.96221 1.03992 0.92509 1.70232 1.11210 1.26773 1.29625 0.85167 0.78930 0.75978 0.79400 1.18835 1.19493 1.17733 1.21975 0.99331 0.92518 1.15350 1.21632 1.02125 0.88309 0.92587 1.20773 0.89484 0.90004 1.13867 1.98358 1.71155 1.34131 1.97080 0.92231 0.92238 0.85378 0.80419 0.85143 0.84276 0.91089 0.86230 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.38 113.37 1.18 1.77 16 2 O -0.30 -7.57 9.93 -89.71 -0.89 -8.47 16 3 C 0.32 9.03 7.49 84.83 0.64 9.66 16 4 N -0.53 -15.58 9.19 -307.95 -2.83 -18.41 16 5 C 0.15 4.74 10.61 84.94 0.90 5.64 16 6 C -0.11 -3.68 5.89 -19.95 -0.12 -3.79 16 7 C 0.01 0.47 5.91 -19.88 -0.12 0.35 16 8 C -0.30 -12.07 9.53 22.77 0.22 -11.85 16 9 C 0.11 4.98 11.17 84.80 0.95 5.93 16 10 N -0.52 -28.43 7.85 -189.39 -1.49 -29.91 16 11 C 0.22 12.00 6.55 40.19 0.26 12.26 16 12 C -0.47 -24.56 9.14 23.49 0.21 -24.34 16 13 H 0.09 4.47 7.85 -2.91 -0.02 4.44 16 14 C 0.02 1.23 5.50 85.29 0.47 1.70 16 15 N -0.76 -40.28 11.46 21.84 0.25 -40.03 16 16 Si 0.98 37.21 29.56 68.60 2.03 39.24 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 20 C -0.27 -12.33 9.23 23.08 0.21 -12.12 16 21 C -0.02 -0.61 9.35 22.68 0.21 -0.40 16 22 C -0.11 -3.11 6.35 22.48 0.14 -2.97 16 23 Cl -0.04 -0.87 28.53 -2.72 -0.08 -0.94 16 24 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 25 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 26 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.18 5.17 6.30 -2.91 -0.02 5.15 16 28 H 0.13 4.31 6.38 -2.91 -0.02 4.29 16 29 H 0.14 5.66 8.06 -2.91 -0.02 5.64 16 30 H 0.28 13.42 8.29 -92.71 -0.77 12.65 16 31 H 0.12 4.88 6.35 -2.91 -0.02 4.86 16 32 H 0.17 4.30 6.40 -2.91 -0.02 4.28 16 Total: -1.00 -61.74 298.90 3.32 -58.42 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.17 Total: 18.27 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 5.16 Total: -18.16 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -4.06 Total: -88.35 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.89 Total: -8.47 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.94 kcal Total: -61.74 3.32 -58.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242934181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.720 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds