Wall clock time and date at job start Tue Mar 31 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35708 * 117.00064 * 2 1 4 4 N 1.32269 * 119.63071 * 359.97438 * 3 2 1 5 5 C 1.32003 * 122.00291 * 180.02562 * 4 3 2 6 6 C 1.37823 * 121.00679 * 359.97438 * 5 4 3 7 7 C 1.40098 * 119.13808 * 0.02562 * 6 5 4 8 8 C 1.48021 * 120.90363 * 179.97438 * 7 6 5 9 9 C 1.39851 * 119.44673 * 0.02562 * 8 7 6 10 10 C 1.36651 * 119.46386 * 179.67312 * 9 8 7 11 11 C 1.41286 * 118.40832 * 0.56160 * 10 9 8 12 12 C 1.41054 * 120.55680 * 179.72950 * 11 10 9 13 13 H 1.08007 * 120.00036 * 26.19630 * 12 11 10 14 14 C 1.40060 * 120.00165 * 206.19534 * 12 11 10 15 15 N 1.30763 * 119.99860 * 25.11989 * 14 12 11 16 16 Si 1.86804 * 120.00353 * 205.11845 * 14 12 11 17 17 H 1.48500 * 109.47303 * 180.02562 * 16 14 12 18 18 H 1.48506 * 109.46946 * 300.00239 * 16 14 12 19 19 H 1.48495 * 109.47050 * 59.99923 * 16 14 12 20 20 C 1.40960 * 118.88411 * 359.46011 * 11 10 9 21 21 N 1.31249 * 120.40067 * 0.24943 * 20 11 10 22 22 C 1.38816 * 119.62388 * 180.28036 * 3 2 1 23 23 Cl 1.73594 * 120.54365 * 0.03028 * 22 3 2 24 24 H 1.09001 * 109.46948 * 300.00260 * 1 2 3 25 25 H 1.09005 * 109.46723 * 59.99482 * 1 2 3 26 26 H 1.08993 * 109.47173 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.49491 * 180.02562 * 5 4 3 28 28 H 1.08005 * 120.42904 * 180.02562 * 6 5 4 29 29 H 1.07997 * 120.26665 * 359.97438 * 9 8 7 30 30 H 1.08000 * 120.79493 * 180.29748 * 10 9 8 31 31 H 0.96996 * 120.00355 * 5.83146 * 15 14 12 32 32 H 1.07999 * 119.79997 * 180.27233 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 7 1.3176 2.3138 -0.0005 5 6 1.8677 3.5138 -0.0010 6 6 3.2374 3.6669 -0.0005 7 6 4.0513 2.5265 0.0000 8 6 5.5267 2.6456 0.0000 9 6 6.1141 3.9148 -0.0001 10 6 7.4761 4.0251 0.0067 11 6 8.2465 2.8407 0.0013 12 6 9.6557 2.9018 0.0022 13 1 10.1587 3.7617 0.4195 14 6 10.4027 1.8474 -0.5380 15 7 9.8753 1.0723 -1.4495 16 14 12.1525 1.5484 0.0437 17 1 12.7215 0.3818 -0.6779 18 1 12.9783 2.7514 -0.2323 19 1 12.1490 1.2746 1.5032 20 6 7.5831 1.5970 0.0009 21 7 6.2717 1.5437 0.0005 22 6 3.4319 1.2727 -0.0059 23 17 4.3815 -0.1804 -0.0141 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.2348 4.3889 -0.0010 28 1 3.6776 4.6531 -0.0006 29 1 5.4962 4.8005 -0.0005 30 1 7.9523 4.9944 0.0116 31 1 8.9997 1.2772 -1.8129 32 1 8.1574 0.6823 0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243313462.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:14 Heat of formation + Delta-G solvation = 0.244980 kcal Electronic energy + Delta-G solvation = -19720.841782 eV Core-core repulsion = 16478.624988 eV Total energy + Delta-G solvation = -3242.216794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63456 -40.41321 -38.82509 -37.22083 -36.41426 -33.87829 -33.13895 -31.59338 -30.75961 -28.35141 -27.35006 -24.96376 -24.46931 -23.22684 -22.45026 -20.05803 -19.35249 -18.27203 -17.41460 -17.07996 -16.74993 -16.66757 -16.34955 -15.61938 -15.34178 -15.10500 -14.99109 -14.42241 -14.06492 -13.83482 -13.61493 -13.53401 -12.97302 -12.78239 -12.72649 -12.65445 -12.17822 -12.02237 -11.79234 -11.74392 -11.20376 -10.87476 -10.78980 -10.48425 -9.66517 -9.46096 -9.38739 -9.34230 -6.62947 -0.31559 0.08997 0.83372 0.99908 1.41948 1.51846 1.65564 1.80977 2.02907 2.26832 2.51207 2.79656 3.34311 3.52048 3.54559 3.91314 3.96765 4.23657 4.37926 4.44303 4.44642 4.50053 4.54408 4.71266 4.76450 4.86890 5.07575 5.14132 5.32199 5.45729 5.57295 5.58839 5.83652 6.01507 6.16419 6.45029 6.61533 6.74903 7.57406 7.80893 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.030592 B = 0.004299 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.041104 B = 6510.876394 C = 7311.941553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.321 3.679 4 N -0.548 5.548 5 C 0.150 3.850 6 C -0.208 4.208 7 C 0.072 3.928 8 C -0.049 4.049 9 C -0.083 4.083 10 C -0.213 4.213 11 C 0.031 3.969 12 C -0.502 4.502 13 H 0.094 0.906 14 C 0.003 3.997 15 N -0.789 5.789 16 Si 1.119 2.881 17 H -0.273 1.273 18 H -0.249 1.249 19 H -0.261 1.261 20 C -0.032 4.032 21 N -0.424 5.424 22 C -0.140 4.140 23 Cl -0.041 7.041 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.121 0.879 27 H 0.210 0.790 28 H 0.169 0.831 29 H 0.149 0.851 30 H 0.127 0.873 31 H 0.286 0.714 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.979 4.170 2.257 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.143 3.857 4 N -0.273 5.273 5 C -0.004 4.004 6 C -0.229 4.229 7 C 0.064 3.936 8 C -0.182 4.182 9 C -0.103 4.103 10 C -0.237 4.237 11 C 0.025 3.975 12 C -0.529 4.529 13 H 0.112 0.888 14 C -0.217 4.217 15 N -0.410 5.410 16 Si 0.935 3.065 17 H -0.197 1.197 18 H -0.173 1.173 19 H -0.186 1.186 20 C -0.200 4.200 21 N -0.132 5.132 22 C -0.170 4.170 23 Cl -0.012 7.012 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.139 0.861 27 H 0.227 0.773 28 H 0.187 0.813 29 H 0.167 0.833 30 H 0.145 0.855 31 H 0.099 0.901 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.938 1.848 2.027 11.277 hybrid contribution -0.059 1.500 -0.029 1.501 sum -10.997 3.348 1.998 11.668 Atomic orbital electron populations 1.23110 0.75336 1.04675 1.02615 1.86295 1.24800 1.23829 1.87551 1.19437 0.87124 0.86190 0.92987 1.67453 1.39407 0.98673 1.21809 1.23000 0.92661 0.94060 0.90700 1.22313 0.94325 0.98882 1.07368 1.18934 0.91962 0.91383 0.91333 1.19064 0.91091 0.89840 1.18169 1.21554 0.95206 0.97287 0.96270 1.21271 0.93709 0.97726 1.10989 1.19015 0.95269 0.93184 0.90017 1.21038 0.91651 1.06850 1.33356 0.88805 1.28731 1.10581 0.90415 0.91937 1.70560 1.18526 1.34674 1.17255 0.82976 0.67757 0.78474 0.77312 1.19729 1.17313 1.18600 1.22523 0.89671 0.96581 1.11207 1.67488 1.07067 1.32033 1.06590 1.21112 0.89582 0.90230 1.16106 1.98345 1.71696 1.34437 1.96770 0.91970 0.92044 0.86108 0.77303 0.81339 0.83303 0.85503 0.90103 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.38 113.37 1.18 1.97 16 2 O -0.32 -10.22 9.95 -90.28 -0.90 -11.11 16 3 C 0.32 11.22 7.48 84.77 0.63 11.85 16 4 N -0.55 -16.17 9.19 -309.12 -2.84 -19.01 16 5 C 0.15 3.63 11.16 84.57 0.94 4.58 16 6 C -0.21 -5.90 9.48 22.62 0.21 -5.69 16 7 C 0.07 2.81 5.91 -19.84 -0.12 2.69 16 8 C -0.05 -2.21 6.74 41.95 0.28 -1.93 16 9 C -0.08 -3.35 9.40 22.29 0.21 -3.14 16 10 C -0.21 -9.39 9.88 22.65 0.22 -9.17 16 11 C 0.03 1.54 5.29 -21.17 -0.11 1.43 16 12 C -0.50 -24.46 9.00 23.40 0.21 -24.25 16 13 H 0.09 4.27 7.96 -2.91 -0.02 4.25 16 14 C 0.00 0.14 4.95 85.29 0.42 0.56 16 15 N -0.79 -40.43 12.35 21.85 0.27 -40.16 16 16 Si 1.12 39.00 30.00 68.60 2.06 41.06 16 17 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.25 -7.73 7.11 99.48 0.71 -7.03 16 19 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 20 C -0.03 -1.70 9.15 85.45 0.78 -0.92 16 21 N -0.42 -21.37 6.98 -182.70 -1.27 -22.64 16 22 C -0.14 -5.59 6.39 22.80 0.15 -5.45 16 23 Cl -0.04 -1.79 25.41 -2.72 -0.07 -1.85 16 24 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 25 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 26 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.17 3.71 6.28 -2.91 -0.02 3.69 16 29 H 0.15 4.54 6.24 -2.91 -0.02 4.52 16 30 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.29 15.56 6.72 -92.71 -0.62 14.93 16 32 H 0.12 6.48 6.57 -2.91 -0.02 6.46 16 Total: -1.00 -62.58 294.63 3.58 -59.01 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.31 Total: 22.19 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 5.02 Total: -27.48 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -3.85 Total: -81.81 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.90 Total: -11.11 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.06 Total: 41.06 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.07 Total: -1.85 kcal Total: -62.58 3.58 -59.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243313462.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.251 kcal (2) G-P(sol) polarization free energy of solvation -62.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds