Wall clock time and date at job start Tue Mar 31 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35710 * 116.99907 * 2 1 4 4 N 1.32259 * 119.63899 * 359.97438 * 3 2 1 5 5 C 1.31984 * 121.94352 * 180.02562 * 4 3 2 6 6 C 1.37872 * 120.98320 * 359.96915 * 5 4 3 7 7 C 1.39875 * 119.15910 * 0.02898 * 6 5 4 8 8 C 1.48388 * 120.87723 * 179.72424 * 7 6 5 9 9 C 1.38862 * 119.61325 * 359.72642 * 8 7 6 10 10 C 1.40873 * 118.76558 * 179.73950 * 9 8 7 11 11 C 1.41523 * 120.99012 * 180.27856 * 10 9 8 12 12 H 1.08004 * 120.00103 * 203.52897 * 11 10 9 13 13 C 1.40050 * 120.00052 * 23.52559 * 11 10 9 14 14 N 1.30723 * 119.99952 * 17.02071 * 13 11 10 15 15 Si 1.86800 * 119.99895 * 197.01910 * 13 11 10 16 16 H 1.48497 * 109.47318 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46798 * 120.00236 * 15 13 11 18 18 H 1.48502 * 109.47409 * 239.99889 * 15 13 11 19 19 C 1.41120 * 118.02338 * 0.51958 * 10 9 8 20 20 C 1.37783 * 119.06384 * 359.73985 * 19 10 9 21 21 N 1.31892 * 121.15297 * 359.97438 * 20 19 10 22 22 C 1.38837 * 119.63394 * 179.97438 * 3 2 1 23 23 Cl 1.73602 * 120.52672 * 359.97438 * 22 3 2 24 24 H 1.09000 * 109.47640 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47472 * 300.00441 * 1 2 3 26 26 H 1.09004 * 109.47244 * 60.00058 * 1 2 3 27 27 H 1.08009 * 119.50704 * 180.02562 * 5 4 3 28 28 H 1.08004 * 120.41828 * 180.02562 * 6 5 4 29 29 H 1.08005 * 120.62100 * 359.97438 * 9 8 7 30 30 H 0.97009 * 120.00080 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.46992 * 179.75830 * 19 10 9 32 32 H 1.07999 * 119.42469 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 7 1.3178 2.3138 -0.0005 5 6 1.8692 3.5130 -0.0010 6 6 3.2396 3.6640 -0.0004 7 6 4.0508 2.5245 0.0001 8 6 5.5299 2.6427 -0.0053 9 6 6.1177 3.9008 -0.0169 10 6 7.5235 3.9923 -0.0163 11 6 8.1718 5.2503 -0.0219 12 1 9.1818 5.3357 -0.3949 13 6 7.5038 6.3845 0.4564 14 7 6.4386 6.2498 1.2021 15 14 8.1349 8.0898 0.0286 16 1 9.3460 7.9704 -0.8223 17 1 7.0839 8.8360 -0.7089 18 1 8.4761 8.8189 1.2765 19 6 8.2660 2.7923 -0.0152 20 6 7.5941 1.5894 -0.0094 21 7 6.2760 1.5442 -0.0042 22 6 3.4320 1.2730 0.0005 23 17 4.3816 -0.1803 0.0019 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.2374 4.3890 -0.0010 28 1 3.6811 4.6497 -0.0005 29 1 5.5085 4.7926 -0.0223 30 1 5.9761 7.0354 1.5336 31 1 9.3457 2.8163 -0.0187 32 1 8.1566 0.6674 -0.0081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243315676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:19 Heat of formation + Delta-G solvation = 24.411113 kcal Electronic energy + Delta-G solvation = -19896.889350 eV Core-core repulsion = 16655.720478 eV Total energy + Delta-G solvation = -3241.168872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33661 -38.54863 -37.45854 -35.74535 -34.28554 -32.75955 -30.78658 -30.29208 -28.89214 -27.10983 -26.10303 -23.47131 -23.21175 -21.45815 -20.63340 -18.27793 -17.11446 -16.90701 -15.89107 -15.86260 -15.51004 -14.73582 -14.50446 -14.25305 -13.89900 -13.75639 -13.56934 -12.75737 -12.45875 -12.41352 -12.18456 -11.67236 -11.57402 -11.29855 -11.26932 -11.06137 -10.96565 -10.51037 -10.13571 -10.05671 -9.62986 -9.46999 -9.39747 -8.15583 -8.05624 -7.81134 -7.47975 -6.97376 -4.71674 1.14137 1.41048 2.67068 2.78596 2.82383 2.95921 3.00905 3.15558 3.20177 3.76112 4.01619 4.54239 4.56531 4.90934 5.19901 5.32913 5.36412 5.45636 5.54200 5.59583 5.70322 5.89583 6.14846 6.34446 6.53034 6.65617 6.77251 6.84253 7.00489 7.16385 7.27947 7.36420 7.70028 7.94622 8.00623 8.28585 8.56694 8.60823 9.44256 9.93235 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.005071 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.077872 B = 5520.661841 C = 6685.412060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.301 6.301 3 C 0.316 3.684 4 N -0.540 5.540 5 C 0.129 3.871 6 C -0.186 4.186 7 C 0.072 3.928 8 C 0.119 3.881 9 C -0.172 4.172 10 C 0.121 3.879 11 C -0.452 4.452 12 H 0.084 0.916 13 C 0.078 3.922 14 N -0.786 5.786 15 Si 0.912 3.088 16 H -0.259 1.259 17 H -0.269 1.269 18 H -0.272 1.272 19 C -0.264 4.264 20 C 0.103 3.897 21 N -0.535 5.535 22 C -0.091 4.091 23 Cl -0.014 7.014 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.162 0.838 28 H 0.151 0.849 29 H 0.134 0.866 30 H 0.285 0.715 31 H 0.103 0.897 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.123 -3.206 -1.611 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.208 6.208 3 C 0.136 3.864 4 N -0.265 5.265 5 C -0.025 4.025 6 C -0.207 4.207 7 C 0.063 3.937 8 C -0.011 4.011 9 C -0.195 4.195 10 C 0.113 3.887 11 C -0.483 4.483 12 H 0.102 0.898 13 C -0.142 4.142 14 N -0.411 5.411 15 Si 0.736 3.264 16 H -0.182 1.182 17 H -0.194 1.194 18 H -0.197 1.197 19 C -0.287 4.287 20 C -0.053 4.053 21 N -0.250 5.250 22 C -0.121 4.121 23 Cl 0.015 6.985 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.179 0.821 28 H 0.169 0.831 29 H 0.151 0.849 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.450 -4.397 -1.470 10.526 hybrid contribution 1.437 1.812 -0.015 2.313 sum -8.013 -2.584 -1.484 8.550 Atomic orbital electron populations 1.22801 0.77721 1.02551 1.02238 1.86300 1.22375 1.24053 1.88028 1.19385 0.87601 0.85250 0.94124 1.67288 1.39917 0.98543 1.20721 1.22253 0.92729 0.93311 0.94230 1.22217 0.93826 0.99906 1.04735 1.18959 0.93373 0.90036 0.91312 1.18973 0.89470 0.90618 1.02080 1.22272 0.95923 0.96061 1.05222 1.17763 0.91352 0.92754 0.86803 1.19657 1.01140 0.91260 1.36259 0.89776 1.25984 0.94067 1.01972 0.92167 1.69748 1.16064 1.32877 1.22447 0.86191 0.80186 0.80633 0.79423 1.18208 1.19429 1.19749 1.21994 0.99151 0.93538 1.13991 1.21920 0.90220 0.96226 0.96962 1.67800 1.06463 1.30076 1.20624 1.20910 0.88700 0.90817 1.11700 1.98356 1.71012 1.32724 1.96381 0.88903 0.92491 0.92498 0.82066 0.83113 0.84874 0.90420 0.87898 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 101.05 1.05 1.54 16 2 O -0.30 -4.87 9.95 -18.84 -0.19 -5.06 16 3 C 0.32 5.69 7.48 -17.15 -0.13 5.57 16 4 N -0.54 -8.99 9.19 -13.38 -0.12 -9.11 16 5 C 0.13 1.99 11.16 -17.62 -0.20 1.79 16 6 C -0.19 -3.31 9.48 -39.10 -0.37 -3.68 16 7 C 0.07 1.50 5.91 -104.59 -0.62 0.88 16 8 C 0.12 2.78 6.73 -83.04 -0.56 2.22 16 9 C -0.17 -4.19 8.16 -38.35 -0.31 -4.50 16 10 C 0.12 3.04 5.61 -106.56 -0.60 2.44 16 11 C -0.45 -11.13 9.12 -37.65 -0.34 -11.47 16 12 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 13 C 0.08 1.79 5.20 -17.34 -0.09 1.70 16 14 N -0.79 -18.50 10.91 55.55 0.61 -17.89 16 15 Si 0.91 17.17 29.59 -169.99 -5.03 12.14 16 16 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 17 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 19 C -0.26 -6.13 9.90 -38.66 -0.38 -6.51 16 20 C 0.10 2.29 11.15 -17.69 -0.20 2.10 16 21 N -0.54 -12.46 6.99 -9.94 -0.07 -12.53 16 22 C -0.09 -1.81 6.39 -38.85 -0.25 -2.06 16 23 Cl -0.01 -0.27 25.42 -51.86 -1.32 -1.59 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.16 1.86 8.06 -52.48 -0.42 1.43 16 28 H 0.15 2.62 6.31 -52.48 -0.33 2.29 16 29 H 0.13 3.20 4.40 -52.48 -0.23 2.97 16 30 H 0.28 6.02 8.29 -40.82 -0.34 5.68 16 31 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -27.49 295.46 -7.31 -34.80 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -2.64 Total: 4.77 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -3.00 Total: -9.97 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.41 Total: -39.53 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.19 Total: -5.06 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.32 Total: -1.59 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.49 -7.31 -34.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243315676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.209 kcal (2) G-P(sol) polarization free energy of solvation -27.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds