Wall clock time and date at job start Tue Mar 31 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35710 * 116.99907 * 2 1 4 4 N 1.32259 * 119.63899 * 359.97438 * 3 2 1 5 5 C 1.31984 * 121.94352 * 180.02562 * 4 3 2 6 6 C 1.37872 * 120.98320 * 359.96915 * 5 4 3 7 7 C 1.39875 * 119.15910 * 0.02898 * 6 5 4 8 8 C 1.48388 * 120.87723 * 179.72424 * 7 6 5 9 9 C 1.38862 * 119.61325 * 359.72642 * 8 7 6 10 10 C 1.40873 * 118.76558 * 179.73950 * 9 8 7 11 11 C 1.41523 * 120.99012 * 180.27856 * 10 9 8 12 12 H 1.08004 * 120.00103 * 203.52897 * 11 10 9 13 13 C 1.40050 * 120.00052 * 23.52559 * 11 10 9 14 14 N 1.30723 * 119.99952 * 17.02071 * 13 11 10 15 15 Si 1.86800 * 119.99895 * 197.01910 * 13 11 10 16 16 H 1.48497 * 109.47318 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46798 * 120.00236 * 15 13 11 18 18 H 1.48502 * 109.47409 * 239.99889 * 15 13 11 19 19 C 1.41120 * 118.02338 * 0.51958 * 10 9 8 20 20 C 1.37783 * 119.06384 * 359.73985 * 19 10 9 21 21 N 1.31892 * 121.15297 * 359.97438 * 20 19 10 22 22 C 1.38837 * 119.63394 * 179.97438 * 3 2 1 23 23 Cl 1.73602 * 120.52672 * 359.97438 * 22 3 2 24 24 H 1.09000 * 109.47640 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47472 * 300.00441 * 1 2 3 26 26 H 1.09004 * 109.47244 * 60.00058 * 1 2 3 27 27 H 1.08009 * 119.50704 * 180.02562 * 5 4 3 28 28 H 1.08004 * 120.41828 * 180.02562 * 6 5 4 29 29 H 1.08005 * 120.62100 * 359.97438 * 9 8 7 30 30 H 0.97009 * 120.00080 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.46992 * 179.75830 * 19 10 9 32 32 H 1.07999 * 119.42469 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 7 1.3178 2.3138 -0.0005 5 6 1.8692 3.5130 -0.0010 6 6 3.2396 3.6640 -0.0004 7 6 4.0508 2.5245 0.0001 8 6 5.5299 2.6427 -0.0053 9 6 6.1177 3.9008 -0.0169 10 6 7.5235 3.9923 -0.0163 11 6 8.1718 5.2503 -0.0219 12 1 9.1818 5.3357 -0.3949 13 6 7.5038 6.3845 0.4564 14 7 6.4386 6.2498 1.2021 15 14 8.1349 8.0898 0.0286 16 1 9.3460 7.9704 -0.8223 17 1 7.0839 8.8360 -0.7089 18 1 8.4761 8.8189 1.2765 19 6 8.2660 2.7923 -0.0152 20 6 7.5941 1.5894 -0.0094 21 7 6.2760 1.5442 -0.0042 22 6 3.4320 1.2730 0.0005 23 17 4.3816 -0.1803 0.0019 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.2374 4.3890 -0.0010 28 1 3.6811 4.6497 -0.0005 29 1 5.5085 4.7926 -0.0223 30 1 5.9761 7.0354 1.5336 31 1 9.3457 2.8163 -0.0187 32 1 8.1566 0.6674 -0.0081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243315676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:19 Heat of formation + Delta-G solvation = 8.434423 kcal Electronic energy + Delta-G solvation = -19897.582151 eV Core-core repulsion = 16655.720478 eV Total energy + Delta-G solvation = -3241.861673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70146 -40.20426 -38.79908 -37.23292 -36.04321 -34.28892 -32.54456 -31.65540 -30.53093 -28.20236 -27.88019 -24.97940 -24.67167 -23.14294 -22.22432 -19.81482 -18.69230 -18.28007 -17.34522 -17.15890 -17.09836 -16.29481 -16.10101 -15.90402 -15.31334 -15.08609 -14.94984 -14.37833 -14.08972 -14.01597 -13.53531 -13.20342 -12.93710 -12.76924 -12.73387 -12.61354 -12.18509 -12.02632 -11.82440 -11.70449 -11.29340 -10.97129 -10.87704 -9.97884 -9.55981 -9.41240 -9.20477 -8.70327 -6.56292 -0.38764 0.03229 0.98424 1.08897 1.34965 1.41832 1.55182 1.57990 1.98508 2.19372 2.56602 2.84151 3.25118 3.44345 3.73010 3.84267 4.01844 4.28893 4.33620 4.46615 4.47241 4.65934 4.76736 4.77298 4.88500 5.01298 5.16319 5.21435 5.29758 5.41505 5.50401 5.89135 6.12319 6.15961 6.46954 6.65937 6.75535 6.79215 7.65872 8.23474 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.005071 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.077872 B = 5520.661841 C = 6685.412060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.318 3.682 4 N -0.532 5.532 5 C 0.149 3.851 6 C -0.190 4.190 7 C 0.044 3.956 8 C 0.113 3.887 9 C -0.194 4.194 10 C 0.093 3.907 11 C -0.484 4.484 12 H 0.083 0.917 13 C 0.043 3.957 14 N -0.810 5.810 15 Si 0.984 3.016 16 H -0.260 1.260 17 H -0.260 1.260 18 H -0.266 1.266 19 C -0.280 4.280 20 C 0.099 3.901 21 N -0.544 5.544 22 C -0.111 4.111 23 Cl -0.022 7.022 24 H 0.124 0.876 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.209 0.791 28 H 0.151 0.849 29 H 0.131 0.869 30 H 0.295 0.705 31 H 0.115 0.885 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.690 -2.390 -1.724 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.218 6.218 3 C 0.138 3.862 4 N -0.257 5.257 5 C -0.006 4.006 6 C -0.211 4.211 7 C 0.035 3.965 8 C -0.017 4.017 9 C -0.217 4.217 10 C 0.085 3.915 11 C -0.514 4.514 12 H 0.101 0.899 13 C -0.175 4.175 14 N -0.435 5.435 15 Si 0.805 3.195 16 H -0.183 1.183 17 H -0.184 1.184 18 H -0.191 1.191 19 C -0.302 4.302 20 C -0.057 4.057 21 N -0.258 5.258 22 C -0.141 4.141 23 Cl 0.007 6.993 24 H 0.142 0.858 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.226 0.774 28 H 0.169 0.831 29 H 0.149 0.851 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.027 -3.615 -1.578 11.712 hybrid contribution 1.786 1.486 0.046 2.324 sum -9.241 -2.129 -1.532 9.606 Atomic orbital electron populations 1.23147 0.75215 1.04886 1.02648 1.86296 1.24838 1.23194 1.87513 1.19447 0.87152 0.86258 0.93322 1.67470 1.39363 0.98551 1.20318 1.22942 0.92145 0.94302 0.91190 1.22323 0.94790 0.99036 1.04977 1.19049 0.92363 0.91604 0.93462 1.19383 0.91109 0.90337 1.00877 1.22282 0.95828 0.96483 1.07069 1.18171 0.92170 0.93766 0.87369 1.19913 1.01626 0.92220 1.37647 0.89863 1.26778 0.94075 1.05270 0.91390 1.69775 1.16764 1.34530 1.22466 0.85116 0.79594 0.75614 0.79216 1.18311 1.18421 1.19055 1.22200 0.99848 0.93570 1.14611 1.22408 0.90298 0.97144 0.95874 1.67915 1.06843 1.30090 1.20954 1.21032 0.89689 0.90301 1.13115 1.98337 1.71414 1.33029 1.96531 0.85753 0.92076 0.91974 0.77439 0.83125 0.85131 0.89370 0.86717 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.38 113.37 1.18 1.91 16 2 O -0.31 -9.56 9.95 -90.31 -0.90 -10.46 16 3 C 0.32 11.01 7.48 84.77 0.63 11.65 16 4 N -0.53 -16.39 9.19 -309.08 -2.84 -19.23 16 5 C 0.15 4.19 11.16 84.58 0.94 5.13 16 6 C -0.19 -6.64 9.48 22.58 0.21 -6.42 16 7 C 0.04 1.84 5.91 -19.85 -0.12 1.73 16 8 C 0.11 5.44 6.73 41.85 0.28 5.72 16 9 C -0.19 -9.73 8.16 23.06 0.19 -9.54 16 10 C 0.09 4.81 5.61 -21.12 -0.12 4.69 16 11 C -0.48 -24.33 9.12 23.52 0.21 -24.11 16 12 H 0.08 4.04 7.90 -2.91 -0.02 4.01 16 13 C 0.04 1.97 5.20 85.30 0.44 2.41 16 14 N -0.81 -38.30 10.91 21.84 0.24 -38.06 16 15 Si 0.98 34.75 29.59 68.60 2.03 36.78 16 16 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 17 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 18 H -0.27 -9.05 7.11 99.48 0.71 -8.35 16 19 C -0.28 -13.29 9.90 22.87 0.23 -13.06 16 20 C 0.10 4.44 11.15 84.58 0.94 5.38 16 21 N -0.54 -25.71 6.99 -185.36 -1.30 -27.01 16 22 C -0.11 -4.40 6.39 22.75 0.15 -4.26 16 23 Cl -0.02 -0.88 25.42 -2.72 -0.07 -0.95 16 24 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 26 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 27 H 0.21 3.84 8.06 -2.91 -0.02 3.82 16 28 H 0.15 5.21 6.31 -2.91 -0.02 5.19 16 29 H 0.13 6.47 4.40 -2.91 -0.01 6.45 16 30 H 0.30 12.35 8.29 -92.70 -0.77 11.58 16 31 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 32 H 0.15 5.76 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -60.06 295.46 3.51 -56.55 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 1.17 Total: 21.17 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 5.18 Total: -18.78 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -3.90 Total: -84.30 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.90 Total: -10.46 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.95 kcal Total: -60.06 3.51 -56.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243315676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.980 kcal (2) G-P(sol) polarization free energy of solvation -60.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds