Wall clock time and date at job start Tue Mar 31 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35710 * 116.99640 * 2 1 4 4 N 1.32252 * 119.63922 * 0.02562 * 3 2 1 5 5 C 1.31979 * 121.95184 * 179.97438 * 4 3 2 6 6 C 1.37877 * 120.98875 * 359.97156 * 5 4 3 7 7 C 1.39897 * 119.15326 * 0.02562 * 6 5 4 8 8 C 1.48362 * 120.87944 * 179.97438 * 7 6 5 9 9 C 1.39856 * 119.60581 * 356.06763 * 8 7 6 10 10 C 1.38714 * 119.46401 * 180.02562 * 9 8 7 11 11 C 1.38270 * 118.68480 * 359.73797 * 10 9 8 12 12 C 1.40697 * 119.18154 * 0.52848 * 11 10 9 13 13 C 1.41396 * 119.77265 * 179.74443 * 12 11 10 14 14 H 1.07997 * 120.00182 * 206.76668 * 13 12 11 15 15 C 1.40024 * 119.99524 * 26.76538 * 13 12 11 16 16 N 1.30740 * 119.99629 * 197.16443 * 15 13 12 17 17 Si 1.86801 * 120.00131 * 16.89205 * 15 13 12 18 18 H 1.48508 * 109.46895 * 265.11219 * 17 15 13 19 19 H 1.48496 * 109.47141 * 25.10752 * 17 15 13 20 20 H 1.48493 * 109.47170 * 145.11364 * 17 15 13 21 21 N 1.32205 * 119.60305 * 176.09486 * 8 7 6 22 22 C 1.38854 * 119.63370 * 180.23871 * 3 2 1 23 23 Cl 1.73597 * 120.52949 * 0.04659 * 22 3 2 24 24 H 1.09000 * 109.47473 * 59.99644 * 1 2 3 25 25 H 1.09000 * 109.47420 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47419 * 299.99670 * 1 2 3 27 27 H 1.08009 * 119.50580 * 179.97438 * 5 4 3 28 28 H 1.07994 * 120.42350 * 180.02562 * 6 5 4 29 29 H 1.07997 * 120.26899 * 0.02562 * 9 8 7 30 30 H 1.08003 * 120.66322 * 180.02562 * 10 9 8 31 31 H 1.08006 * 120.41112 * 180.27452 * 11 10 9 32 32 H 0.96997 * 119.99928 * 179.72813 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 7 1.3177 2.3138 0.0005 5 6 1.8688 3.5130 0.0010 6 6 3.2393 3.6644 0.0017 7 6 4.0508 2.5249 0.0012 8 6 5.5297 2.6433 0.0013 9 6 6.1216 3.9077 -0.0816 10 6 7.5046 4.0150 -0.0818 11 6 8.2598 2.8602 0.0060 12 6 7.6058 1.6168 0.0812 13 6 8.3659 0.4275 0.1659 14 1 7.9560 -0.5025 -0.1992 15 6 9.6501 0.4558 0.7232 16 7 10.4781 -0.5329 0.5079 17 14 10.1831 1.9097 1.7681 18 1 10.9118 2.8876 0.9207 19 1 8.9858 2.5610 2.3575 20 1 11.0754 1.4363 2.8566 21 7 6.2722 1.5523 0.0791 22 6 3.4321 1.2731 -0.0050 23 17 4.3818 -0.1800 -0.0125 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.2369 4.3889 0.0010 28 1 3.6806 4.6501 0.0025 29 1 5.5069 4.7935 -0.1449 30 1 7.9820 4.9818 -0.1446 31 1 9.3387 2.9116 0.0126 32 1 11.3690 -0.5115 0.8907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243316261.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:22 Heat of formation + Delta-G solvation = 13.088009 kcal Electronic energy + Delta-G solvation = -19920.587259 eV Core-core repulsion = 16678.927381 eV Total energy + Delta-G solvation = -3241.659879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72359 -40.40344 -38.85786 -37.23991 -35.85804 -34.26107 -33.02799 -31.63901 -31.43316 -28.22676 -27.71896 -25.27663 -24.51579 -22.80208 -22.64349 -19.95557 -18.78347 -18.23401 -17.78735 -17.31710 -17.10817 -16.60651 -16.25429 -15.94441 -15.22933 -15.07976 -15.02037 -14.64843 -14.28285 -13.90998 -13.57420 -13.53222 -12.96713 -12.82881 -12.70248 -12.67496 -12.34677 -12.16611 -11.78120 -11.74285 -11.28467 -10.89916 -10.86250 -10.33731 -9.52101 -9.40583 -9.33810 -8.95828 -6.66996 -0.45473 0.03713 0.70911 1.01179 1.22286 1.38692 1.39780 1.45970 1.99360 2.06668 2.46216 2.73949 3.21167 3.39226 3.61927 3.83008 3.94170 4.23975 4.34269 4.40174 4.45749 4.50062 4.53129 4.60867 4.71684 4.78084 5.03568 5.09657 5.22501 5.33572 5.56862 5.62672 5.89502 6.13537 6.18579 6.46692 6.67724 6.68099 7.70369 8.12878 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.024725 B = 0.005294 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.202278 B = 5287.915541 C = 6229.311982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.318 6.318 3 C 0.315 3.685 4 N -0.532 5.532 5 C 0.146 3.854 6 C -0.175 4.175 7 C 0.032 3.968 8 C 0.150 3.850 9 C -0.251 4.251 10 C -0.046 4.046 11 C -0.290 4.290 12 C 0.238 3.762 13 C -0.456 4.456 14 H 0.051 0.949 15 C 0.050 3.950 16 N -0.838 5.838 17 Si 0.975 3.025 18 H -0.246 1.246 19 H -0.259 1.259 20 H -0.277 1.277 21 N -0.532 5.532 22 C -0.118 4.118 23 Cl -0.032 7.032 24 H 0.063 0.937 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.218 0.782 28 H 0.182 0.818 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.112 0.888 32 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 11.096 0.480 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.136 3.864 4 N -0.257 5.257 5 C -0.009 4.009 6 C -0.195 4.195 7 C 0.023 3.977 8 C 0.008 3.992 9 C -0.274 4.274 10 C -0.070 4.070 11 C -0.312 4.312 12 C 0.111 3.889 13 C -0.488 4.488 14 H 0.069 0.931 15 C -0.167 4.167 16 N -0.464 5.464 17 Si 0.798 3.202 18 H -0.171 1.171 19 H -0.183 1.183 20 H -0.203 1.203 21 N -0.245 5.245 22 C -0.149 4.149 23 Cl -0.003 7.003 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.234 0.766 28 H 0.200 0.800 29 H 0.177 0.823 30 H 0.173 0.827 31 H 0.130 0.870 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.623 9.548 0.529 18.317 hybrid contribution 1.846 0.265 0.189 1.874 sum -13.777 9.813 0.718 16.930 Atomic orbital electron populations 1.23133 0.75142 1.04752 1.02766 1.86314 1.24953 1.23774 1.87472 1.19447 0.87072 0.86294 0.93580 1.67477 1.39558 0.98793 1.19836 1.23183 0.92773 0.94092 0.90805 1.22469 0.94180 0.99104 1.03769 1.19115 0.92037 0.91754 0.94761 1.19889 0.91518 0.90847 0.96939 1.21783 0.95251 0.97094 1.13251 1.21434 0.93861 0.98069 0.93611 1.22104 0.99947 0.94536 1.14580 1.18674 0.88406 0.92739 0.89058 1.19130 0.98129 0.94945 1.36619 0.93063 1.26829 0.94475 0.99870 0.95481 1.69638 1.07316 1.33314 1.36100 0.85386 0.78851 0.77813 0.78133 1.17056 1.18277 1.20347 1.68671 1.06288 1.30855 1.18722 1.21316 0.89981 0.90815 1.12786 1.98413 1.71156 1.34292 1.96442 0.91779 0.86243 0.91805 0.76588 0.80034 0.82253 0.82722 0.87012 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.38 113.37 1.18 1.92 16 2 O -0.32 -9.91 9.95 -90.31 -0.90 -10.81 16 3 C 0.31 10.38 7.48 84.78 0.63 11.01 16 4 N -0.53 -14.15 9.19 -309.07 -2.84 -16.99 16 5 C 0.15 2.97 11.16 84.59 0.94 3.92 16 6 C -0.17 -4.18 9.48 22.59 0.21 -3.96 16 7 C 0.03 1.15 5.91 -19.84 -0.12 1.03 16 8 C 0.15 6.30 6.73 42.18 0.28 6.59 16 9 C -0.25 -8.76 9.49 22.78 0.22 -8.55 16 10 C -0.05 -1.68 10.15 22.39 0.23 -1.45 16 11 C -0.29 -13.25 7.09 22.88 0.16 -13.09 16 12 C 0.24 12.65 6.04 40.27 0.24 12.89 16 13 C -0.46 -26.63 9.82 23.48 0.23 -26.40 16 14 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 15 C 0.05 2.71 5.43 85.29 0.46 3.17 16 16 N -0.84 -45.90 13.92 21.84 0.30 -45.60 16 17 Si 0.98 42.01 24.38 68.60 1.67 43.68 16 18 H -0.25 -9.55 6.67 99.48 0.66 -8.89 16 19 H -0.26 -11.52 6.70 99.48 0.67 -10.85 16 20 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 21 N -0.53 -27.03 6.98 -178.19 -1.24 -28.28 16 22 C -0.12 -4.55 6.39 22.75 0.15 -4.40 16 23 Cl -0.03 -1.43 25.44 -2.72 -0.07 -1.50 16 24 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 25 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 27 H 0.22 2.07 8.06 -2.91 -0.02 2.04 16 28 H 0.18 2.97 6.32 -2.91 -0.02 2.95 16 29 H 0.16 3.88 6.28 -2.91 -0.02 3.86 16 30 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 31 H 0.11 4.98 4.17 -2.91 -0.01 4.96 16 32 H 0.30 14.48 8.29 -92.71 -0.77 13.72 16 Total: -1.00 -70.66 289.47 2.84 -67.83 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.09 Total: 9.00 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.82 Total: -17.33 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -3.78 Total: -90.87 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.90 Total: -10.81 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.67 Total: 43.68 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.50 kcal Total: -70.66 2.84 -67.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243316261.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.914 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds