Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35710 * 116.99865 * 2 1 4 4 N 1.32288 * 119.63557 * 359.97438 * 3 2 1 5 5 C 1.31994 * 121.93605 * 179.97438 * 4 3 2 6 6 C 1.37854 * 120.98257 * 359.71038 * 5 4 3 7 7 C 1.39878 * 119.15729 * 0.58220 * 6 5 4 8 8 C 1.48397 * 120.88098 * 179.70394 * 7 6 5 9 9 C 1.39705 * 120.40970 * 129.98611 * 8 7 6 10 10 N 1.31911 * 121.14712 * 180.29749 * 9 8 7 11 11 C 1.31519 * 122.12295 * 359.72005 * 10 9 8 12 12 C 1.40767 * 120.66812 * 359.97438 * 11 10 9 13 13 C 1.41437 * 120.60088 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99905 * 155.58072 * 13 12 11 15 15 C 1.39936 * 120.00497 * 335.57529 * 13 12 11 16 16 N 1.30831 * 119.99838 * 342.36197 * 15 13 12 17 17 Si 1.86805 * 120.00367 * 162.35361 * 15 13 12 18 18 H 1.48500 * 109.46960 * 94.67430 * 17 15 13 19 19 H 1.48494 * 109.47495 * 214.67781 * 17 15 13 20 20 H 1.48507 * 109.47025 * 334.68089 * 17 15 13 21 21 C 1.39146 * 120.40973 * 309.72555 * 8 7 6 22 22 C 1.38789 * 119.63538 * 180.02562 * 3 2 1 23 23 Cl 1.73595 * 120.52433 * 0.02669 * 22 3 2 24 24 H 1.08994 * 109.47535 * 59.99564 * 1 2 3 25 25 H 1.09005 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46763 * 299.99252 * 1 2 3 27 27 H 1.08011 * 119.50901 * 179.97438 * 5 4 3 28 28 H 1.07996 * 120.42201 * 180.31116 * 6 5 4 29 29 H 1.08004 * 119.42776 * 359.97438 * 9 8 7 30 30 H 1.08006 * 119.66775 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99616 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.95861 * 359.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 7 1.3175 2.3140 -0.0005 5 6 1.8690 3.5132 0.0000 6 6 3.2393 3.6641 0.0070 7 6 4.0504 2.5246 0.0013 8 6 5.5297 2.6426 0.0020 9 6 6.2962 1.9225 0.9215 10 7 7.6115 2.0209 0.9389 11 6 8.2664 2.7901 0.0967 12 6 7.5769 3.5475 -0.8689 13 6 8.2826 4.3747 -1.7735 14 1 7.8417 4.6338 -2.7248 15 6 9.5519 4.8574 -1.4361 16 7 9.9454 4.8467 -0.1884 17 14 10.6848 5.5169 -2.7670 18 1 10.5312 6.9909 -2.8620 19 1 12.0922 5.1867 -2.4276 20 1 10.3312 4.8975 -4.0696 21 6 6.1708 3.4678 -0.9168 22 6 3.4315 1.2731 -0.0005 23 17 4.3810 -0.1802 -0.0019 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.2373 4.3893 -0.0009 28 1 3.6809 4.6497 0.0124 29 1 5.8029 1.2779 1.6340 30 1 9.3441 2.8412 0.1465 31 1 10.8255 5.1809 0.0455 32 1 5.6068 4.0339 -1.6434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243318969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = 14.303101 kcal Electronic energy + Delta-G solvation = -19637.562232 eV Core-core repulsion = 16395.955044 eV Total energy + Delta-G solvation = -3241.607188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.54079 -38.58409 -37.64684 -36.19750 -34.20211 -33.11160 -30.86987 -30.45183 -29.11588 -27.20751 -25.71888 -23.61137 -23.25334 -21.44553 -20.92483 -18.32080 -17.17390 -16.96792 -16.16879 -16.06636 -15.60710 -15.30663 -14.71890 -14.46153 -14.22102 -13.66375 -13.49078 -12.87137 -12.55219 -12.21368 -11.87048 -11.78938 -11.61574 -11.59279 -11.30147 -11.21666 -10.98960 -10.88144 -10.59068 -10.32300 -9.62107 -9.57330 -9.44506 -8.38101 -8.31032 -7.95510 -7.57682 -6.99590 -4.58635 1.04024 1.23704 2.42845 2.55121 2.69629 2.98793 3.02475 3.05104 3.10776 3.78111 3.80918 4.34867 4.49731 4.89819 5.00728 5.19478 5.24765 5.26057 5.44058 5.54040 5.58200 5.91262 6.00875 6.19692 6.27298 6.42658 6.58478 6.83457 6.97178 7.11249 7.17131 7.42245 7.59628 7.80544 7.91529 8.20086 8.55231 8.60686 9.58811 9.97680 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.029464 B = 0.004126 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.079874 B = 6785.177866 C = 7250.438296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.299 6.299 3 C 0.327 3.673 4 N -0.540 5.540 5 C 0.137 3.863 6 C -0.191 4.191 7 C 0.076 3.924 8 C -0.100 4.100 9 C -0.001 4.001 10 N -0.476 5.476 11 C 0.057 3.943 12 C 0.061 3.939 13 C -0.451 4.451 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.788 5.788 17 Si 0.913 3.087 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.259 1.259 21 C -0.167 4.167 22 C -0.108 4.108 23 Cl -0.036 7.036 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.164 0.836 28 H 0.147 0.853 29 H 0.122 0.878 30 H 0.153 0.847 31 H 0.286 0.714 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -2.695 -0.685 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.206 6.206 3 C 0.148 3.852 4 N -0.265 5.265 5 C -0.018 4.018 6 C -0.212 4.212 7 C 0.067 3.933 8 C -0.102 4.102 9 C -0.156 4.156 10 N -0.184 5.184 11 C -0.106 4.106 12 C 0.056 3.944 13 C -0.480 4.480 14 H 0.101 0.899 15 C -0.144 4.144 16 N -0.413 5.413 17 Si 0.737 3.263 18 H -0.194 1.194 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.193 4.193 22 C -0.138 4.138 23 Cl -0.008 7.008 24 H 0.076 0.924 25 H 0.113 0.887 26 H 0.076 0.924 27 H 0.181 0.819 28 H 0.165 0.835 29 H 0.140 0.860 30 H 0.170 0.830 31 H 0.097 0.903 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.268 -3.609 0.104 12.789 hybrid contribution 0.698 1.035 -1.146 1.694 sum -11.570 -2.574 -1.042 11.899 Atomic orbital electron populations 1.22840 0.77408 1.02785 1.02351 1.86315 1.22642 1.23898 1.87740 1.19329 0.87433 0.85381 0.93069 1.67362 1.39733 0.98496 1.20885 1.22343 0.92852 0.93413 0.93162 1.22173 0.93795 0.99572 1.05625 1.19161 0.94632 0.89806 0.89690 1.19080 0.88652 1.01947 1.00519 1.21848 0.89728 1.02883 1.01095 1.67204 1.08949 1.18526 1.23672 1.23155 0.99956 0.93597 0.93906 1.18440 0.90944 0.91736 0.93254 1.19516 0.99971 1.25745 1.02804 0.89937 1.25969 0.98328 0.94017 0.96068 1.69757 1.19900 1.33809 1.17799 0.86212 0.79105 0.79501 0.81520 1.19405 1.19767 1.18257 1.21309 0.94353 1.02439 1.01197 1.20952 0.88980 0.89944 1.13908 1.98367 1.71287 1.34241 1.96870 0.92366 0.88716 0.92355 0.81916 0.83550 0.86031 0.83026 0.90252 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.30 -4.40 9.95 -18.84 -0.19 -4.59 16 3 C 0.33 5.30 7.48 -17.15 -0.13 5.17 16 4 N -0.54 -8.00 9.20 -13.38 -0.12 -8.13 16 5 C 0.14 1.82 11.16 -17.62 -0.20 1.62 16 6 C -0.19 -2.93 9.66 -39.11 -0.38 -3.31 16 7 C 0.08 1.40 5.51 -104.58 -0.58 0.82 16 8 C -0.10 -2.16 5.18 -104.83 -0.54 -2.70 16 9 C 0.00 -0.01 9.45 -16.97 -0.16 -0.17 16 10 N -0.48 -12.00 10.32 -12.28 -0.13 -12.13 16 11 C 0.06 1.49 9.89 -16.73 -0.17 1.32 16 12 C 0.06 1.54 5.58 -106.71 -0.60 0.94 16 13 C -0.45 -11.14 9.08 -37.73 -0.34 -11.48 16 14 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 15 C 0.08 1.76 5.15 -17.34 -0.09 1.68 16 16 N -0.79 -19.19 10.97 55.55 0.61 -18.58 16 17 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 18 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 C -0.17 -3.85 9.47 -38.23 -0.36 -4.21 16 22 C -0.11 -1.92 6.33 -38.86 -0.25 -2.17 16 23 Cl -0.04 -0.65 25.76 -51.86 -1.34 -1.99 16 24 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.12 2.61 7.20 -52.48 -0.38 2.24 16 30 H 0.15 4.00 6.15 -52.48 -0.32 3.68 16 31 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 32 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -27.59 299.51 -7.20 -34.79 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -2.78 Total: 4.69 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.73 Total: -11.02 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.36 Total: -38.83 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.19 Total: -4.59 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.34 Total: -1.99 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.59 -7.20 -34.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243318969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.090 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds