Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35710 * 116.99865 * 2 1 4 4 N 1.32288 * 119.63557 * 359.97438 * 3 2 1 5 5 C 1.31994 * 121.93605 * 179.97438 * 4 3 2 6 6 C 1.37854 * 120.98257 * 359.71038 * 5 4 3 7 7 C 1.39878 * 119.15729 * 0.58220 * 6 5 4 8 8 C 1.48397 * 120.88098 * 179.70394 * 7 6 5 9 9 C 1.39705 * 120.40970 * 129.98611 * 8 7 6 10 10 N 1.31911 * 121.14712 * 180.29749 * 9 8 7 11 11 C 1.31519 * 122.12295 * 359.72005 * 10 9 8 12 12 C 1.40767 * 120.66812 * 359.97438 * 11 10 9 13 13 C 1.41437 * 120.60088 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99905 * 155.58072 * 13 12 11 15 15 C 1.39936 * 120.00497 * 335.57529 * 13 12 11 16 16 N 1.30831 * 119.99838 * 342.36197 * 15 13 12 17 17 Si 1.86805 * 120.00367 * 162.35361 * 15 13 12 18 18 H 1.48500 * 109.46960 * 94.67430 * 17 15 13 19 19 H 1.48494 * 109.47495 * 214.67781 * 17 15 13 20 20 H 1.48507 * 109.47025 * 334.68089 * 17 15 13 21 21 C 1.39146 * 120.40973 * 309.72555 * 8 7 6 22 22 C 1.38789 * 119.63538 * 180.02562 * 3 2 1 23 23 Cl 1.73595 * 120.52433 * 0.02669 * 22 3 2 24 24 H 1.08994 * 109.47535 * 59.99564 * 1 2 3 25 25 H 1.09005 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46763 * 299.99252 * 1 2 3 27 27 H 1.08011 * 119.50901 * 179.97438 * 5 4 3 28 28 H 1.07996 * 120.42201 * 180.31116 * 6 5 4 29 29 H 1.08004 * 119.42776 * 359.97438 * 9 8 7 30 30 H 1.08006 * 119.66775 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99616 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.95861 * 359.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 7 1.3175 2.3140 -0.0005 5 6 1.8690 3.5132 0.0000 6 6 3.2393 3.6641 0.0070 7 6 4.0504 2.5246 0.0013 8 6 5.5297 2.6426 0.0020 9 6 6.2962 1.9225 0.9215 10 7 7.6115 2.0209 0.9389 11 6 8.2664 2.7901 0.0967 12 6 7.5769 3.5475 -0.8689 13 6 8.2826 4.3747 -1.7735 14 1 7.8417 4.6338 -2.7248 15 6 9.5519 4.8574 -1.4361 16 7 9.9454 4.8467 -0.1884 17 14 10.6848 5.5169 -2.7670 18 1 10.5312 6.9909 -2.8620 19 1 12.0922 5.1867 -2.4276 20 1 10.3312 4.8975 -4.0696 21 6 6.1708 3.4678 -0.9168 22 6 3.4315 1.2731 -0.0005 23 17 4.3810 -0.1802 -0.0019 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.2373 4.3893 -0.0009 28 1 3.6809 4.6497 0.0124 29 1 5.8029 1.2779 1.6340 30 1 9.3441 2.8412 0.1465 31 1 10.8255 5.1809 0.0455 32 1 5.6068 4.0339 -1.6434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243318969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = -2.625904 kcal Electronic energy + Delta-G solvation = -19638.296329 eV Core-core repulsion = 16395.955044 eV Total energy + Delta-G solvation = -3242.341285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75744 -40.25888 -38.88879 -37.54523 -35.96979 -34.62428 -32.63276 -31.66231 -30.70491 -28.17946 -27.55091 -25.05010 -24.55223 -23.19892 -22.47747 -19.76798 -18.63712 -18.27780 -17.61608 -17.23565 -17.18818 -16.96743 -16.28859 -15.90463 -15.34086 -15.06751 -14.65747 -14.44229 -14.20458 -13.56400 -13.46560 -13.39378 -13.02800 -12.94467 -12.74967 -12.66765 -12.58961 -12.19698 -11.98204 -11.92763 -11.22862 -11.01183 -10.83949 -10.20109 -9.78911 -9.49185 -9.37020 -8.76546 -6.47068 -0.29179 -0.00046 0.81919 0.93848 1.11127 1.41720 1.51510 1.57789 1.96276 2.19079 2.56058 2.71739 3.24288 3.54668 3.65425 3.81552 4.04520 4.16957 4.26668 4.44520 4.46591 4.50897 4.66659 4.72238 4.77387 4.87441 5.14670 5.18295 5.21898 5.32108 5.61052 5.77514 6.04735 6.09066 6.33397 6.63302 6.70146 6.75432 7.70761 8.23368 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.029464 B = 0.004126 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.079874 B = 6785.177866 C = 7250.438296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.327 3.673 4 N -0.534 5.534 5 C 0.156 3.844 6 C -0.191 4.191 7 C 0.051 3.949 8 C -0.084 4.084 9 C -0.012 4.012 10 N -0.493 5.493 11 C 0.026 3.974 12 C 0.039 3.961 13 C -0.477 4.477 14 H 0.088 0.912 15 C 0.038 3.962 16 N -0.818 5.818 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.257 1.257 21 C -0.174 4.174 22 C -0.125 4.125 23 Cl -0.049 7.049 24 H 0.062 0.938 25 H 0.123 0.877 26 H 0.063 0.937 27 H 0.212 0.788 28 H 0.159 0.841 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.294 0.706 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.246 -1.657 -1.545 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.219 6.219 3 C 0.148 3.852 4 N -0.259 5.259 5 C 0.001 3.999 6 C -0.211 4.211 7 C 0.042 3.958 8 C -0.086 4.086 9 C -0.168 4.168 10 N -0.200 5.200 11 C -0.137 4.137 12 C 0.035 3.965 13 C -0.506 4.506 14 H 0.106 0.894 15 C -0.179 4.179 16 N -0.443 5.443 17 Si 0.807 3.193 18 H -0.184 1.184 19 H -0.192 1.192 20 H -0.181 1.181 21 C -0.199 4.199 22 C -0.154 4.154 23 Cl -0.021 7.021 24 H 0.081 0.919 25 H 0.141 0.859 26 H 0.081 0.919 27 H 0.228 0.772 28 H 0.176 0.824 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.105 0.895 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.353 -2.588 -0.748 14.604 hybrid contribution 1.121 0.686 -0.821 1.550 sum -13.232 -1.902 -1.569 13.460 Atomic orbital electron populations 1.23157 0.75083 1.04908 1.02758 1.86307 1.24944 1.23318 1.87301 1.19385 0.87003 0.86314 0.92536 1.67539 1.39319 0.98627 1.20432 1.23068 0.92455 0.94262 0.90076 1.22369 0.94574 0.99011 1.05128 1.19072 0.92951 0.91400 0.92399 1.19223 0.90755 0.99861 0.98736 1.22078 0.89226 1.03603 1.01887 1.67110 1.10249 1.18730 1.23932 1.22932 0.99463 0.95583 0.95716 1.18724 0.92213 0.92064 0.93504 1.19816 1.01303 1.26428 1.03099 0.89351 1.26845 0.99209 0.93750 0.98099 1.69814 1.20655 1.34103 1.19710 0.85106 0.76865 0.79049 0.78267 1.18412 1.19159 1.18051 1.21541 0.93749 1.02917 1.01732 1.21030 0.89817 0.89283 1.15305 1.98355 1.71713 1.34969 1.97017 0.91914 0.85901 0.91861 0.77177 0.82355 0.84998 0.84601 0.89461 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.31 -8.57 9.95 -90.31 -0.90 -9.47 16 3 C 0.33 9.93 7.48 84.76 0.63 10.57 16 4 N -0.53 -14.07 9.20 -309.09 -2.84 -16.91 16 5 C 0.16 3.53 11.16 84.58 0.94 4.47 16 6 C -0.19 -5.36 9.66 22.58 0.22 -5.14 16 7 C 0.05 1.81 5.51 -19.84 -0.11 1.70 16 8 C -0.08 -3.63 5.18 -20.00 -0.10 -3.74 16 9 C -0.01 -0.57 9.45 85.04 0.80 0.23 16 10 N -0.49 -25.78 10.32 -192.78 -1.99 -27.77 16 11 C 0.03 1.38 9.89 85.36 0.84 2.22 16 12 C 0.04 2.05 5.58 -21.22 -0.12 1.93 16 13 C -0.48 -24.00 9.08 23.47 0.21 -23.78 16 14 H 0.09 4.19 7.91 -2.91 -0.02 4.16 16 15 C 0.04 1.78 5.15 85.25 0.44 2.21 16 16 N -0.82 -40.72 10.97 21.82 0.24 -40.48 16 17 Si 0.99 35.54 29.59 68.60 2.03 37.57 16 18 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 19 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 20 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 21 C -0.17 -8.06 9.47 23.14 0.22 -7.84 16 22 C -0.12 -4.32 6.33 22.74 0.14 -4.18 16 23 Cl -0.05 -1.77 25.76 -2.72 -0.07 -1.84 16 24 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 25 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 27 H 0.21 2.73 8.06 -2.90 -0.02 2.71 16 28 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.13 5.79 7.20 -2.91 -0.02 5.77 16 30 H 0.14 7.61 6.15 -2.91 -0.02 7.59 16 31 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 32 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -61.16 299.51 2.94 -58.22 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 1.16 Total: 20.21 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 5.31 Total: -19.52 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -4.59 Total: -85.17 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.90 Total: -9.47 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.07 Total: -1.84 kcal Total: -61.16 2.94 -58.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243318969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.597 kcal (2) G-P(sol) polarization free energy of solvation -61.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds