Wall clock time and date at job start Tue Mar 31 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35710 * 116.99559 * 2 1 4 4 N 1.32298 * 119.62901 * 359.97438 * 3 2 1 5 5 C 1.32022 * 122.01457 * 180.02562 * 4 3 2 6 6 C 1.37783 * 121.01511 * 359.97438 * 5 4 3 7 7 C 1.40166 * 119.12789 * 0.02562 * 6 5 4 8 8 C 1.47881 * 120.91007 * 179.97438 * 7 6 5 9 9 C 1.39263 * 120.77844 * 65.00003 * 8 7 6 10 10 N 1.31692 * 120.67014 * 180.25437 * 9 8 7 11 11 C 1.32182 * 122.49665 * 359.43069 * 10 9 8 12 12 C 1.36530 * 121.49867 * 0.57506 * 11 10 9 13 13 C 1.41096 * 119.09806 * 359.72201 * 12 11 10 14 14 C 1.40974 * 121.10363 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00240 * 204.22101 * 14 13 12 16 16 C 1.40205 * 120.00119 * 24.22442 * 14 13 12 17 17 N 1.30666 * 119.99915 * 14.24975 * 16 14 13 18 18 Si 1.86797 * 120.00311 * 194.25292 * 16 14 13 19 19 H 1.48503 * 109.47155 * 59.99712 * 18 16 14 20 20 H 1.48501 * 109.47467 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47302 * 300.00076 * 18 16 14 22 22 C 1.38764 * 119.62013 * 180.25776 * 3 2 1 23 23 Cl 1.73602 * 120.54524 * 0.02562 * 22 3 2 24 24 H 1.09003 * 109.47015 * 60.00119 * 1 2 3 25 25 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47299 * 299.99795 * 1 2 3 27 27 H 1.07996 * 119.49049 * 180.02562 * 5 4 3 28 28 H 1.08007 * 120.43608 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.66027 * 359.97438 * 9 8 7 30 30 H 1.08004 * 119.25131 * 180.32288 * 11 10 9 31 31 H 1.07996 * 120.44876 * 179.74714 * 12 11 10 32 32 H 0.96996 * 120.00217 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 7 1.3172 2.3140 -0.0005 5 6 1.8670 3.5143 -0.0010 6 6 3.2363 3.6680 -0.0005 7 6 4.0509 2.5274 0.0000 8 6 5.5249 2.6466 0.0000 9 6 6.1944 3.2085 1.0841 10 7 7.5068 3.3181 1.0797 11 6 8.2510 2.8993 0.0708 12 6 7.6939 2.3339 -1.0401 13 6 6.2919 2.1897 -1.1068 14 6 5.6721 1.6114 -2.2333 15 1 4.6432 1.8456 -2.4632 16 6 6.3914 0.7321 -3.0550 17 7 7.5244 0.2300 -2.6407 18 14 5.7301 0.2784 -4.7420 19 1 5.5907 1.5061 -5.5657 20 1 6.6707 -0.6590 -5.4068 21 1 4.4033 -0.3723 -4.5951 22 6 3.4312 1.2728 -0.0054 23 17 4.3810 -0.1804 -0.0129 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.2338 4.3891 -0.0010 28 1 3.6761 4.6545 -0.0014 29 1 5.6313 3.5621 1.9352 30 1 9.3239 3.0105 0.1247 31 1 8.3178 2.0013 -1.8564 32 1 8.0222 -0.3780 -3.2093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243318991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:42 Heat of formation + Delta-G solvation = 16.482975 kcal Electronic energy + Delta-G solvation = -20456.917719 eV Core-core repulsion = 17215.405057 eV Total energy + Delta-G solvation = -3241.512662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18183 -38.48085 -37.36431 -35.63489 -34.28098 -32.84284 -30.42253 -30.15953 -29.00194 -26.98536 -26.11928 -23.27185 -22.86344 -21.55132 -20.57983 -17.85692 -17.50444 -16.77187 -15.84143 -15.74320 -15.60372 -14.63049 -14.52484 -14.43018 -13.99684 -13.53898 -13.16141 -12.74455 -12.40915 -12.30945 -12.03769 -11.56478 -11.52111 -11.39540 -11.20512 -11.06940 -10.88491 -10.42862 -10.21532 -10.04430 -9.57982 -9.22191 -8.99102 -8.10790 -7.99855 -7.88940 -7.65090 -6.96370 -4.71336 1.46889 1.61229 2.60708 2.75423 2.95228 2.97527 2.99011 3.19023 3.36308 3.77071 4.12157 4.54865 4.66082 5.26973 5.32839 5.42756 5.44907 5.48839 5.65831 5.73394 5.76281 5.87618 6.21287 6.32334 6.61673 6.77029 6.79423 6.82038 7.04953 7.22987 7.38216 7.49263 7.71027 7.96675 8.13688 8.31356 8.58250 8.61376 9.52663 9.91014 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.008364 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.052959 B = 3347.045809 C = 4500.092087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.301 6.301 3 C 0.317 3.683 4 N -0.546 5.546 5 C 0.126 3.874 6 C -0.201 4.201 7 C 0.108 3.892 8 C -0.253 4.253 9 C 0.143 3.857 10 N -0.579 5.579 11 C 0.083 3.917 12 C -0.206 4.206 13 C 0.156 3.844 14 C -0.422 4.422 15 H 0.078 0.922 16 C 0.083 3.917 17 N -0.770 5.770 18 Si 0.904 3.096 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.093 4.093 23 Cl -0.027 7.027 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.156 0.844 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 0.858 0.809 8.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.208 6.208 3 C 0.138 3.862 4 N -0.272 5.272 5 C -0.028 4.028 6 C -0.222 4.222 7 C 0.099 3.901 8 C -0.259 4.259 9 C -0.016 4.016 10 N -0.293 5.293 11 C -0.063 4.063 12 C -0.228 4.228 13 C 0.148 3.852 14 C -0.452 4.452 15 H 0.096 0.904 16 C -0.139 4.139 17 N -0.394 5.394 18 Si 0.728 3.272 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.123 4.123 23 Cl 0.002 6.998 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.174 0.826 28 H 0.156 0.844 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.636 0.566 1.445 8.775 hybrid contribution 0.005 -0.648 -1.589 1.716 sum -8.632 -0.081 -0.144 8.633 Atomic orbital electron populations 1.22776 0.77962 1.02426 1.02093 1.86319 1.22193 1.24251 1.88028 1.19393 0.87696 0.85114 0.93961 1.67273 1.39892 0.98500 1.21487 1.22172 0.92887 0.93209 0.94512 1.22191 0.93748 0.99375 1.06871 1.18810 0.94171 0.89178 0.87977 1.19170 0.89454 1.18302 0.98981 1.21957 0.90480 0.94219 0.94964 1.67338 1.06286 1.25609 1.30096 1.21744 0.98009 0.95969 0.90599 1.21976 0.95959 1.04877 1.00034 1.17565 0.91258 0.86413 0.89925 1.19466 0.98743 1.20784 1.06201 0.90382 1.25953 0.94035 0.94253 0.99636 1.69701 1.12349 1.21005 1.36318 0.86383 0.80198 0.79464 0.81153 1.18497 1.19918 1.18439 1.21167 0.88521 0.90730 1.11929 1.98370 1.71262 1.33694 1.96513 0.92580 0.89047 0.92609 0.82633 0.84390 0.86199 0.86388 0.85202 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 101.05 1.05 1.60 16 2 O -0.30 -5.29 9.95 -18.83 -0.19 -5.48 16 3 C 0.32 6.03 7.48 -17.16 -0.13 5.90 16 4 N -0.55 -9.40 9.19 -13.40 -0.12 -9.52 16 5 C 0.13 1.94 11.16 -17.64 -0.20 1.74 16 6 C -0.20 -3.43 9.87 -39.02 -0.39 -3.81 16 7 C 0.11 2.21 4.50 -104.59 -0.47 1.74 16 8 C -0.25 -5.75 4.82 -104.05 -0.50 -6.25 16 9 C 0.14 3.18 10.93 -17.23 -0.19 2.99 16 10 N -0.58 -13.55 10.32 -13.36 -0.14 -13.69 16 11 C 0.08 1.93 11.09 -18.02 -0.20 1.73 16 12 C -0.21 -5.03 8.74 -39.11 -0.34 -5.37 16 13 C 0.16 3.84 5.17 -106.26 -0.55 3.29 16 14 C -0.42 -10.27 6.92 -37.81 -0.26 -10.53 16 15 H 0.08 1.92 7.17 -52.49 -0.38 1.55 16 16 C 0.08 1.94 5.25 -17.31 -0.09 1.84 16 17 N -0.77 -18.26 10.79 55.56 0.60 -17.66 16 18 Si 0.90 17.89 29.58 -169.99 -5.03 12.86 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 22 C -0.09 -1.95 5.81 -38.75 -0.23 -2.17 16 23 Cl -0.03 -0.60 25.97 -51.86 -1.35 -1.95 16 24 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.14 2.09 8.06 -52.48 -0.42 1.66 16 29 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 30 H 0.12 2.42 8.06 -52.48 -0.42 1.99 16 31 H 0.13 3.20 6.12 -52.49 -0.32 2.88 16 32 H 0.29 6.21 8.29 -40.82 -0.34 5.88 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -27.36 297.40 -7.02 -34.38 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -2.79 Total: 3.88 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.49 Total: -7.30 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.34 Total: -40.87 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.19 Total: -5.48 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.35 Total: -1.95 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.36 -7.02 -34.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243318991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.864 kcal (2) G-P(sol) polarization free energy of solvation -27.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds