Wall clock time and date at job start Tue Mar 31 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35710 * 116.99559 * 2 1 4 4 N 1.32298 * 119.62901 * 359.97438 * 3 2 1 5 5 C 1.32022 * 122.01457 * 180.02562 * 4 3 2 6 6 C 1.37783 * 121.01511 * 359.97438 * 5 4 3 7 7 C 1.40166 * 119.12789 * 0.02562 * 6 5 4 8 8 C 1.47881 * 120.91007 * 179.97438 * 7 6 5 9 9 C 1.39263 * 120.77844 * 65.00003 * 8 7 6 10 10 N 1.31692 * 120.67014 * 180.25437 * 9 8 7 11 11 C 1.32182 * 122.49665 * 359.43069 * 10 9 8 12 12 C 1.36530 * 121.49867 * 0.57506 * 11 10 9 13 13 C 1.41096 * 119.09806 * 359.72201 * 12 11 10 14 14 C 1.40974 * 121.10363 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00240 * 204.22101 * 14 13 12 16 16 C 1.40205 * 120.00119 * 24.22442 * 14 13 12 17 17 N 1.30666 * 119.99915 * 14.24975 * 16 14 13 18 18 Si 1.86797 * 120.00311 * 194.25292 * 16 14 13 19 19 H 1.48503 * 109.47155 * 59.99712 * 18 16 14 20 20 H 1.48501 * 109.47467 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47302 * 300.00076 * 18 16 14 22 22 C 1.38764 * 119.62013 * 180.25776 * 3 2 1 23 23 Cl 1.73602 * 120.54524 * 0.02562 * 22 3 2 24 24 H 1.09003 * 109.47015 * 60.00119 * 1 2 3 25 25 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47299 * 299.99795 * 1 2 3 27 27 H 1.07996 * 119.49049 * 180.02562 * 5 4 3 28 28 H 1.08007 * 120.43608 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.66027 * 359.97438 * 9 8 7 30 30 H 1.08004 * 119.25131 * 180.32288 * 11 10 9 31 31 H 1.07996 * 120.44876 * 179.74714 * 12 11 10 32 32 H 0.96996 * 120.00217 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 7 1.3172 2.3140 -0.0005 5 6 1.8670 3.5143 -0.0010 6 6 3.2363 3.6680 -0.0005 7 6 4.0509 2.5274 0.0000 8 6 5.5249 2.6466 0.0000 9 6 6.1944 3.2085 1.0841 10 7 7.5068 3.3181 1.0797 11 6 8.2510 2.8993 0.0708 12 6 7.6939 2.3339 -1.0401 13 6 6.2919 2.1897 -1.1068 14 6 5.6721 1.6114 -2.2333 15 1 4.6432 1.8456 -2.4632 16 6 6.3914 0.7321 -3.0550 17 7 7.5244 0.2300 -2.6407 18 14 5.7301 0.2784 -4.7420 19 1 5.5907 1.5061 -5.5657 20 1 6.6707 -0.6590 -5.4068 21 1 4.4033 -0.3723 -4.5951 22 6 3.4312 1.2728 -0.0054 23 17 4.3810 -0.1804 -0.0129 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.2338 4.3891 -0.0010 28 1 3.6761 4.6545 -0.0014 29 1 5.6313 3.5621 1.9352 30 1 9.3239 3.0105 0.1247 31 1 8.3178 2.0013 -1.8564 32 1 8.0222 -0.3780 -3.2093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243318991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:42 Heat of formation + Delta-G solvation = -0.034437 kcal Electronic energy + Delta-G solvation = -20457.633968 eV Core-core repulsion = 17215.405057 eV Total energy + Delta-G solvation = -3242.228911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56590 -40.16434 -38.73144 -37.21360 -36.05126 -34.39729 -32.17563 -31.51144 -30.64381 -28.18163 -27.84345 -24.81358 -24.26654 -23.30193 -22.15218 -19.53857 -19.00439 -18.13081 -17.48364 -17.14314 -17.00659 -16.34557 -16.11348 -15.99115 -15.28526 -14.98279 -14.48041 -14.41041 -14.08848 -14.01344 -13.42879 -13.21883 -13.06828 -12.80582 -12.70545 -12.65011 -12.13812 -12.02804 -11.81438 -11.78819 -11.27370 -10.69394 -10.51689 -9.91707 -9.74942 -9.41475 -9.30036 -8.70776 -6.53312 0.03488 0.18628 0.89561 1.01270 1.34266 1.42872 1.44274 1.53617 2.10280 2.13535 2.73203 2.77909 3.40843 3.68385 3.86662 4.01737 4.08519 4.28884 4.43180 4.47204 4.47684 4.59729 4.77043 4.88111 4.96393 5.03465 5.18891 5.33510 5.42464 5.47119 5.58410 5.90424 6.17226 6.21335 6.50099 6.78241 6.78988 6.80974 7.72844 8.19082 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.008364 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.052959 B = 3347.045809 C = 4500.092087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.314 3.686 4 N -0.542 5.542 5 C 0.144 3.856 6 C -0.200 4.200 7 C 0.085 3.915 8 C -0.250 4.250 9 C 0.134 3.866 10 N -0.590 5.590 11 C 0.080 3.920 12 C -0.228 4.228 13 C 0.135 3.865 14 C -0.435 4.435 15 H 0.068 0.932 16 C 0.051 3.949 17 N -0.794 5.794 18 Si 0.960 3.040 19 H -0.256 1.256 20 H -0.262 1.262 21 H -0.266 1.266 22 C -0.118 4.118 23 Cl -0.052 7.052 24 H 0.058 0.942 25 H 0.120 0.880 26 H 0.063 0.937 27 H 0.207 0.793 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 1.770 0.625 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.226 6.226 3 C 0.135 3.865 4 N -0.267 5.267 5 C -0.011 4.011 6 C -0.220 4.220 7 C 0.076 3.924 8 C -0.256 4.256 9 C -0.024 4.024 10 N -0.305 5.305 11 C -0.067 4.067 12 C -0.250 4.250 13 C 0.127 3.873 14 C -0.465 4.465 15 H 0.086 0.914 16 C -0.168 4.168 17 N -0.419 5.419 18 Si 0.781 3.219 19 H -0.180 1.180 20 H -0.186 1.186 21 H -0.191 1.191 22 C -0.148 4.148 23 Cl -0.024 7.024 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.223 0.777 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.593 1.475 1.276 10.771 hybrid contribution 0.480 -0.879 -1.450 1.762 sum -10.113 0.597 -0.174 10.132 Atomic orbital electron populations 1.23093 0.75503 1.04588 1.02549 1.86300 1.24683 1.23877 1.87701 1.19460 0.87291 0.86107 0.93636 1.67448 1.39429 0.98639 1.21230 1.22956 0.92798 0.93977 0.91335 1.22433 0.94328 0.99073 1.06165 1.18894 0.93399 0.90415 0.89713 1.19375 0.90943 1.16955 0.98295 1.22369 0.90383 0.94016 0.95637 1.67399 1.06939 1.26076 1.30098 1.22052 0.99148 0.95339 0.90174 1.21978 0.96198 1.06344 1.00503 1.17862 0.91683 0.86955 0.90800 1.19445 0.98381 1.21678 1.07006 0.91413 1.26582 0.94153 0.93844 1.02260 1.69734 1.13207 1.21455 1.37471 0.85552 0.79375 0.79426 0.77519 1.17955 1.18633 1.19067 1.21302 0.89323 0.90006 1.14155 1.98347 1.72001 1.35189 1.96824 0.92301 0.86189 0.91834 0.77690 0.82357 0.83727 0.84285 0.86202 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 10.38 113.37 1.18 2.04 16 2 O -0.32 -10.83 9.95 -90.31 -0.90 -11.73 16 3 C 0.31 11.52 7.48 84.75 0.63 12.15 16 4 N -0.54 -17.11 9.19 -309.14 -2.84 -19.96 16 5 C 0.14 3.86 11.16 84.56 0.94 4.81 16 6 C -0.20 -6.29 9.87 22.63 0.22 -6.07 16 7 C 0.08 3.41 4.50 -19.85 -0.09 3.32 16 8 C -0.25 -11.36 4.82 -19.49 -0.09 -11.45 16 9 C 0.13 5.88 10.93 84.96 0.93 6.81 16 10 N -0.59 -27.43 10.32 -196.20 -2.02 -29.46 16 11 C 0.08 3.72 11.09 84.24 0.93 4.66 16 12 C -0.23 -11.34 8.74 22.57 0.20 -11.14 16 13 C 0.13 6.73 5.17 -20.92 -0.11 6.63 16 14 C -0.44 -21.54 6.92 23.42 0.16 -21.38 16 15 H 0.07 3.40 7.17 -2.91 -0.02 3.38 16 16 C 0.05 2.41 5.25 85.34 0.45 2.86 16 17 N -0.79 -38.35 10.79 21.87 0.24 -38.12 16 18 Si 0.96 36.62 29.58 68.60 2.03 38.65 16 19 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 22 C -0.12 -4.88 5.81 22.81 0.13 -4.75 16 23 Cl -0.05 -2.34 25.97 -2.72 -0.07 -2.41 16 24 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 25 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 27 H 0.21 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.15 5.48 8.06 -2.91 -0.02 5.46 16 30 H 0.14 5.67 8.06 -2.91 -0.02 5.65 16 31 H 0.12 6.11 6.12 -2.91 -0.02 6.09 16 32 H 0.29 12.87 8.29 -92.71 -0.77 12.10 16 Total: -1.00 -59.56 297.40 3.08 -56.48 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.16 Total: 18.04 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.49 Total: -11.51 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -4.63 Total: -87.53 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.90 Total: -11.73 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.07 Total: -2.41 kcal Total: -59.56 3.08 -56.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243318991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.446 kcal (2) G-P(sol) polarization free energy of solvation -59.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds