Wall clock time and date at job start Tue Mar 31 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86807 * 119.99768 * 2 1 4 4 H 1.48501 * 109.46622 * 269.99552 * 3 2 1 5 5 H 1.48493 * 109.47503 * 29.99491 * 3 2 1 6 6 H 1.48503 * 109.46894 * 150.00120 * 3 2 1 7 7 C 1.38637 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00693 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99634 * 359.97438 * 7 2 1 10 10 C 1.35733 * 116.99962 * 185.42333 * 9 7 2 11 11 C 1.39445 * 120.37674 * 5.72929 * 10 9 7 12 12 C 1.38189 * 118.46465 * 180.02562 * 11 10 9 13 13 C 1.39497 * 119.14048 * 0.02562 * 12 11 10 14 14 C 1.48145 * 119.65911 * 179.71729 * 13 12 11 15 15 C 1.39372 * 120.16417 * 310.48499 * 14 13 12 16 16 C 1.38066 * 119.93433 * 179.97438 * 15 14 13 17 17 Cl 1.73608 * 119.86734 * 180.02562 * 16 15 14 18 18 C 1.38548 * 120.26435 * 359.97438 * 16 15 14 19 19 C 1.38109 * 120.32953 * 359.97438 * 18 16 15 20 20 C 1.38784 * 120.06315 * 359.76001 * 19 18 16 21 21 N 1.39445 * 120.13406 * 180.27767 * 20 19 18 22 22 N 1.32729 * 120.68226 * 359.97438 * 13 12 11 23 23 C 1.31687 * 121.67590 * 0.02562 * 22 13 12 24 24 H 0.97006 * 120.00167 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.77062 * 359.97438 * 11 10 9 26 26 H 1.07997 * 120.42744 * 179.97438 * 12 11 10 27 27 H 1.08004 * 120.03537 * 359.97438 * 15 14 13 28 28 H 1.08005 * 119.83321 * 179.97438 * 18 16 15 29 29 H 1.08005 * 119.96412 * 180.02562 * 19 18 16 30 30 H 0.97001 * 119.99961 * 175.13503 * 21 20 19 31 31 H 0.96996 * 119.99579 * 355.13596 * 21 20 19 32 32 H 1.08003 * 119.60671 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6528 0.6999 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0694 -3.5037 0.1164 11 6 3.4430 -3.4347 0.3461 12 6 4.1526 -4.6154 0.4558 13 6 3.4754 -5.8288 0.3334 14 6 4.2257 -7.1014 0.4428 15 6 5.3905 -7.2936 -0.2981 16 6 6.0864 -8.4813 -0.1920 17 17 7.5374 -8.7186 -1.1152 18 6 5.6319 -9.4842 0.6489 19 6 4.4796 -9.3050 1.3889 20 6 3.7724 -8.1144 1.2969 21 7 2.6120 -7.9297 2.0478 22 7 2.1664 -5.8548 0.1148 23 6 1.4615 -4.7479 0.0053 24 1 -0.4851 0.8401 -0.0004 25 1 3.9411 -2.4805 0.4354 26 1 5.2178 -4.5989 0.6333 27 1 5.7484 -6.5142 -0.9545 28 1 6.1815 -10.4107 0.7262 29 1 4.1309 -10.0906 2.0429 30 1 2.1583 -7.0724 2.0364 31 1 2.2585 -8.6585 2.5813 32 1 0.3980 -4.8080 -0.1731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243485345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:22 Heat of formation + Delta-G solvation = 20.298571 kcal Electronic energy + Delta-G solvation = -19306.096151 eV Core-core repulsion = 16064.748945 eV Total energy + Delta-G solvation = -3241.347205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.03607 -38.95795 -37.17964 -36.35602 -34.13027 -32.66224 -31.91345 -31.23469 -28.97821 -27.83770 -25.65410 -23.36729 -22.95598 -21.87480 -20.95650 -18.28837 -17.56113 -17.00037 -16.76154 -16.31631 -15.54750 -14.77995 -14.61076 -14.20819 -14.05049 -13.81580 -13.65274 -13.50125 -13.15109 -12.54781 -12.43078 -12.08251 -11.92839 -11.86566 -11.61157 -11.23578 -11.15208 -10.68407 -10.62694 -10.09744 -9.90226 -9.23153 -9.10906 -8.91772 -8.76288 -7.68745 -7.12788 -6.67745 -4.25082 1.20718 1.52787 1.92635 2.11728 2.36788 3.01648 3.02005 3.07137 3.78473 3.80064 4.03795 4.42200 4.68399 4.88222 4.93990 5.03456 5.18127 5.34642 5.46948 5.59639 5.73721 5.85808 5.92275 6.04728 6.19871 6.29306 6.43516 6.51172 6.65495 6.84088 6.92135 7.10282 7.35519 7.58494 7.74448 7.92597 8.62606 8.76679 9.40172 10.48496 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.003472 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.427495 B = 8063.736567 C = 8898.730998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.160 6.160 10 C 0.107 3.893 11 C -0.200 4.200 12 C -0.098 4.098 13 C 0.045 3.955 14 C -0.073 4.073 15 C -0.052 4.052 16 C -0.096 4.096 17 Cl -0.090 7.090 18 C -0.065 4.065 19 C -0.197 4.197 20 C 0.247 3.753 21 N -0.859 5.859 22 N -0.434 5.434 23 C 0.029 3.971 24 H 0.274 0.726 25 H 0.138 0.862 26 H 0.120 0.880 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.407 0.593 31 H 0.394 0.606 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.070 -13.323 2.771 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.471 4.471 8 H 0.112 0.888 9 O -0.060 6.060 10 C 0.049 3.951 11 C -0.226 4.226 12 C -0.118 4.118 13 C -0.090 4.090 14 C -0.079 4.079 15 C -0.073 4.073 16 C -0.124 4.124 17 Cl -0.061 7.061 18 C -0.085 4.085 19 C -0.220 4.220 20 C 0.138 3.862 21 N -0.397 5.397 22 N -0.144 5.144 23 C -0.134 4.134 24 H 0.084 0.916 25 H 0.156 0.844 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.239 0.761 31 H 0.222 0.778 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.328 -13.865 2.593 16.380 hybrid contribution 0.748 1.741 0.165 1.902 sum 9.076 -12.123 2.758 15.393 Atomic orbital electron populations 1.70029 1.06079 1.28282 1.44035 1.25363 0.95911 0.99084 0.95962 0.85659 0.78970 0.79578 0.78991 1.19597 1.20014 1.18997 1.21392 0.91964 0.80618 1.53089 0.88830 1.83981 1.34204 1.11472 1.76343 1.20552 0.91128 0.89343 0.94053 1.21494 0.94329 0.99007 1.07769 1.21706 0.99790 0.91948 0.98330 1.18874 0.89835 0.90916 1.09342 1.17782 0.96397 0.93522 1.00207 1.20821 0.93277 0.95648 0.97512 1.20364 0.92475 0.97318 1.02290 1.98327 1.37212 1.97098 1.73474 1.20676 0.95522 0.97721 0.94534 1.20389 0.97996 0.97546 1.06051 1.17818 0.86669 0.92517 0.89182 1.42572 1.27501 1.17955 1.51648 1.67464 1.06918 1.30156 1.09824 1.21761 0.99853 0.85119 1.06651 0.91565 0.84443 0.86185 0.85161 0.85510 0.85565 0.76098 0.77828 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.53 13.67 55.48 0.76 -22.77 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.28 29.55 -169.99 -5.02 14.26 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.39 -10.31 9.46 30.88 0.29 -10.02 16 8 H 0.09 2.25 5.34 -52.49 -0.28 1.97 16 9 O -0.16 -4.24 9.76 0.16 0.00 -4.24 16 10 C 0.11 2.41 6.67 -38.88 -0.26 2.15 16 11 C -0.20 -4.06 9.22 -39.15 -0.36 -4.42 16 12 C -0.10 -1.74 9.51 -39.13 -0.37 -2.11 16 13 C 0.05 0.81 5.68 -82.94 -0.47 0.34 16 14 C -0.07 -1.15 5.61 -104.73 -0.59 -1.73 16 15 C -0.05 -0.75 9.25 -39.22 -0.36 -1.11 16 16 C -0.10 -1.25 6.31 -39.53 -0.25 -1.49 16 17 Cl -0.09 -1.07 28.95 -51.86 -1.50 -2.57 16 18 C -0.06 -0.75 9.81 -39.51 -0.39 -1.14 16 19 C -0.20 -2.29 9.88 -39.43 -0.39 -2.68 16 20 C 0.25 3.42 6.74 -83.52 -0.56 2.86 16 21 N -0.86 -10.76 8.88 32.56 0.29 -10.47 16 22 N -0.43 -8.23 8.73 -9.63 -0.08 -8.31 16 23 C 0.03 0.60 11.14 -17.36 -0.19 0.40 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 25 H 0.14 2.73 5.83 -52.48 -0.31 2.43 16 26 H 0.12 1.83 8.03 -52.49 -0.42 1.41 16 27 H 0.13 1.80 8.02 -52.48 -0.42 1.38 16 28 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 30 H 0.41 5.81 6.69 -40.82 -0.27 5.54 16 31 H 0.39 3.69 8.84 -40.82 -0.36 3.33 16 32 H 0.15 2.90 8.06 -52.48 -0.42 2.47 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -28.36 300.87 -7.49 -35.85 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.47 Total: 11.65 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -4.00 Total: -17.94 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.96 Total: -41.55 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: 0.00 Total: -4.24 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.36 -7.49 -35.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243485345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.151 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds