Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86807 * 119.99768 * 2 1 4 4 H 1.48501 * 109.46622 * 269.99552 * 3 2 1 5 5 H 1.48493 * 109.47503 * 29.99491 * 3 2 1 6 6 H 1.48503 * 109.46894 * 150.00120 * 3 2 1 7 7 C 1.38637 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00693 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99634 * 359.97438 * 7 2 1 10 10 C 1.35733 * 116.99962 * 185.42333 * 9 7 2 11 11 C 1.39445 * 120.37674 * 5.72929 * 10 9 7 12 12 C 1.38189 * 118.46465 * 180.02562 * 11 10 9 13 13 C 1.39497 * 119.14048 * 0.02562 * 12 11 10 14 14 C 1.48145 * 119.65911 * 179.71729 * 13 12 11 15 15 C 1.39372 * 120.16417 * 310.48499 * 14 13 12 16 16 C 1.38066 * 119.93433 * 179.97438 * 15 14 13 17 17 Cl 1.73608 * 119.86734 * 180.02562 * 16 15 14 18 18 C 1.38548 * 120.26435 * 359.97438 * 16 15 14 19 19 C 1.38109 * 120.32953 * 359.97438 * 18 16 15 20 20 C 1.38784 * 120.06315 * 359.76001 * 19 18 16 21 21 N 1.39445 * 120.13406 * 180.27767 * 20 19 18 22 22 N 1.32729 * 120.68226 * 359.97438 * 13 12 11 23 23 C 1.31687 * 121.67590 * 0.02562 * 22 13 12 24 24 H 0.97006 * 120.00167 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.77062 * 359.97438 * 11 10 9 26 26 H 1.07997 * 120.42744 * 179.97438 * 12 11 10 27 27 H 1.08004 * 120.03537 * 359.97438 * 15 14 13 28 28 H 1.08005 * 119.83321 * 179.97438 * 18 16 15 29 29 H 1.08005 * 119.96412 * 180.02562 * 19 18 16 30 30 H 0.97001 * 119.99961 * 175.13503 * 21 20 19 31 31 H 0.96996 * 119.99579 * 355.13596 * 21 20 19 32 32 H 1.08003 * 119.60671 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6528 0.6999 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0694 -3.5037 0.1164 11 6 3.4430 -3.4347 0.3461 12 6 4.1526 -4.6154 0.4558 13 6 3.4754 -5.8288 0.3334 14 6 4.2257 -7.1014 0.4428 15 6 5.3905 -7.2936 -0.2981 16 6 6.0864 -8.4813 -0.1920 17 17 7.5374 -8.7186 -1.1152 18 6 5.6319 -9.4842 0.6489 19 6 4.4796 -9.3050 1.3889 20 6 3.7724 -8.1144 1.2969 21 7 2.6120 -7.9297 2.0478 22 7 2.1664 -5.8548 0.1148 23 6 1.4615 -4.7479 0.0053 24 1 -0.4851 0.8401 -0.0004 25 1 3.9411 -2.4805 0.4354 26 1 5.2178 -4.5989 0.6333 27 1 5.7484 -6.5142 -0.9545 28 1 6.1815 -10.4107 0.7262 29 1 4.1309 -10.0906 2.0429 30 1 2.1583 -7.0724 2.0364 31 1 2.2585 -8.6585 2.5813 32 1 0.3980 -4.8080 -0.1731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243485345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = 3.185836 kcal Electronic energy + Delta-G solvation = -19306.838214 eV Core-core repulsion = 16064.748945 eV Total energy + Delta-G solvation = -3242.089269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50745 -40.25603 -38.77912 -37.35592 -35.15521 -34.46210 -33.29073 -32.74883 -30.25254 -29.05797 -27.43477 -24.68504 -24.51372 -23.04776 -22.27423 -20.03407 -19.09714 -18.24560 -17.90140 -17.55063 -17.07825 -16.32422 -16.00560 -15.82501 -15.25287 -15.18919 -14.89444 -14.66075 -14.51889 -14.13265 -13.92322 -13.61202 -13.34809 -12.94962 -12.88800 -12.70386 -12.37048 -12.16107 -11.75040 -11.65802 -11.09755 -10.95177 -10.60288 -10.50522 -10.03785 -9.16948 -8.54052 -8.29481 -6.21653 -0.00508 0.33731 0.50129 0.69452 1.35866 1.37103 1.44622 1.52779 2.13020 2.65541 2.84247 3.03295 3.10159 3.23187 3.51482 3.83742 3.94037 4.06320 4.19168 4.26724 4.49615 4.51487 4.62155 4.85071 4.94771 5.01687 5.15587 5.28598 5.29035 5.38618 5.44600 5.69600 5.82838 5.91239 6.53064 6.89007 6.94855 7.05859 7.62048 8.67295 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.003472 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.427495 B = 8063.736567 C = 8898.730998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.015 4.015 3 Si 1.017 2.983 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.418 4.418 8 H 0.105 0.895 9 O -0.210 6.210 10 C 0.078 3.922 11 C -0.195 4.195 12 C -0.099 4.099 13 C 0.073 3.927 14 C -0.111 4.111 15 C -0.054 4.054 16 C -0.105 4.105 17 Cl -0.081 7.081 18 C -0.053 4.053 19 C -0.188 4.188 20 C 0.241 3.759 21 N -0.857 5.857 22 N -0.436 5.436 23 C 0.026 3.974 24 H 0.276 0.724 25 H 0.140 0.860 26 H 0.152 0.848 27 H 0.130 0.870 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.398 0.602 31 H 0.409 0.591 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.745 -15.694 3.406 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.214 4.214 3 Si 0.836 3.164 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.493 4.493 8 H 0.123 0.877 9 O -0.114 6.114 10 C 0.024 3.976 11 C -0.221 4.221 12 C -0.118 4.118 13 C -0.063 4.063 14 C -0.117 4.117 15 C -0.074 4.074 16 C -0.133 4.133 17 Cl -0.053 7.053 18 C -0.072 4.072 19 C -0.211 4.211 20 C 0.131 3.869 21 N -0.394 5.394 22 N -0.146 5.146 23 C -0.134 4.134 24 H 0.085 0.915 25 H 0.157 0.843 26 H 0.170 0.830 27 H 0.148 0.852 28 H 0.174 0.826 29 H 0.176 0.824 30 H 0.228 0.772 31 H 0.240 0.760 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.014 -16.308 3.237 19.943 hybrid contribution 0.137 1.966 -0.004 1.970 sum 11.151 -14.342 3.233 18.453 Atomic orbital electron populations 1.70163 1.08021 1.29203 1.47348 1.26574 0.96808 1.02699 0.95351 0.84599 0.77947 0.74499 0.79312 1.18868 1.19603 1.17435 1.21848 0.92679 0.81137 1.53675 0.87741 1.83962 1.35434 1.12348 1.79677 1.20943 0.92232 0.89170 0.95260 1.21674 0.93601 1.00180 1.06660 1.22035 1.01316 0.90924 0.97559 1.19467 0.89457 0.92389 1.05015 1.17749 0.97577 0.93328 1.03058 1.20832 0.92873 0.96391 0.97292 1.20476 0.92826 0.97255 1.02785 1.98334 1.36592 1.97007 1.73323 1.21068 0.95141 0.98177 0.92857 1.20738 0.97327 0.97207 1.05792 1.18023 0.87039 0.92849 0.88968 1.42591 1.27135 1.18084 1.51597 1.67604 1.07650 1.29131 1.10203 1.21915 1.00400 0.84948 1.06183 0.91506 0.84261 0.82993 0.85218 0.82648 0.82367 0.77214 0.76030 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.10 13.67 21.61 0.30 -52.81 16 2 C -0.01 -0.80 5.49 84.83 0.47 -0.34 16 3 Si 1.02 40.38 29.55 68.60 2.03 42.41 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.42 -22.77 9.46 67.92 0.64 -22.13 16 8 H 0.11 5.16 5.34 -2.91 -0.02 5.15 16 9 O -0.21 -11.81 9.76 -22.36 -0.22 -12.03 16 10 C 0.08 3.65 6.67 22.73 0.15 3.80 16 11 C -0.19 -7.94 9.22 22.55 0.21 -7.73 16 12 C -0.10 -3.38 9.51 22.56 0.21 -3.17 16 13 C 0.07 2.52 5.68 41.95 0.24 2.76 16 14 C -0.11 -3.21 5.61 -19.94 -0.11 -3.33 16 15 C -0.05 -1.40 9.25 22.50 0.21 -1.19 16 16 C -0.10 -2.37 6.31 22.30 0.14 -2.23 16 17 Cl -0.08 -1.70 28.95 -2.72 -0.08 -1.78 16 18 C -0.05 -0.99 9.81 22.31 0.22 -0.77 16 19 C -0.19 -3.55 9.88 22.37 0.22 -3.33 16 20 C 0.24 5.94 6.74 38.50 0.26 6.20 16 21 N -0.86 -19.41 8.88 -50.89 -0.45 -19.86 16 22 N -0.44 -16.34 8.73 -184.38 -1.61 -17.95 16 23 C 0.03 1.10 11.14 84.88 0.95 2.04 16 24 H 0.28 14.72 8.31 -92.70 -0.77 13.95 16 25 H 0.14 5.57 5.83 -2.91 -0.02 5.55 16 26 H 0.15 4.22 8.03 -2.91 -0.02 4.20 16 27 H 0.13 3.31 8.02 -2.91 -0.02 3.28 16 28 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 29 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.40 10.78 6.69 -92.71 -0.62 10.16 16 31 H 0.41 6.51 8.84 -92.71 -0.82 5.69 16 32 H 0.16 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -64.30 300.87 3.53 -60.77 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.24 Total: 30.66 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 3.80 Total: -29.41 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -1.77 Total: -90.62 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.22 Total: -12.03 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -64.30 3.53 -60.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243485345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.956 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds