Wall clock time and date at job start Tue Mar 31 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86804 * 119.99976 * 2 1 4 4 H 1.48495 * 109.46823 * 269.99763 * 3 2 1 5 5 H 1.48496 * 109.46855 * 29.99511 * 3 2 1 6 6 H 1.48498 * 109.46928 * 149.99891 * 3 2 1 7 7 C 1.38647 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00213 * 0.02562 * 7 2 1 9 9 O 1.34821 * 119.99680 * 179.97438 * 7 2 1 10 10 C 1.35662 * 116.99640 * 185.05831 * 9 7 2 11 11 C 1.38754 * 120.13899 * 354.40248 * 10 9 7 12 12 C 1.38110 * 120.05206 * 179.97438 * 11 10 9 13 13 C 1.38447 * 120.32372 * 0.02562 * 12 11 10 14 14 C 1.38010 * 120.27027 * 359.97438 * 13 12 11 15 15 C 1.39286 * 119.94637 * 359.97438 * 14 13 12 16 16 C 1.48289 * 120.16278 * 180.02562 * 15 14 13 17 17 C 1.39427 * 120.08881 * 130.00302 * 16 15 14 18 18 C 1.38007 * 119.99408 * 180.02562 * 17 16 15 19 19 C 1.38351 * 120.17243 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 119.91571 * 180.02562 * 19 18 17 21 21 C 1.38915 * 120.17584 * 359.97438 * 19 18 17 22 22 O 1.35928 * 119.99561 * 179.97438 * 21 19 18 23 23 C 1.38477 * 120.00102 * 359.72403 * 21 19 18 24 24 H 0.96998 * 120.00165 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.97519 * 359.97372 * 11 10 9 26 26 H 1.08000 * 119.84187 * 180.28036 * 12 11 10 27 27 H 1.07996 * 119.86439 * 179.97438 * 13 12 11 28 28 H 1.08007 * 120.02712 * 180.02562 * 14 13 12 29 29 H 1.08002 * 120.00338 * 359.97438 * 17 16 15 30 30 H 1.08000 * 119.91381 * 180.02562 * 18 17 16 31 31 H 0.96703 * 114.00247 * 89.99886 * 22 21 19 32 32 H 1.08006 * 120.08047 * 180.27183 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4469 2.6527 0.6999 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3570 -1.2007 0.0000 10 6 3.9728 -2.4048 -0.1060 11 6 3.2250 -3.5735 -0.0909 12 6 3.8537 -4.7984 -0.1994 13 6 5.2309 -4.8687 -0.3233 14 6 5.9876 -3.7147 -0.3398 15 6 5.3651 -2.4733 -0.2322 16 6 6.1736 -1.2303 -0.2500 17 6 5.8274 -0.1835 -1.1034 18 6 6.5814 0.9722 -1.1187 19 6 7.6818 1.0956 -0.2893 20 17 8.6253 2.5527 -0.3136 21 6 8.0332 0.0571 0.5638 22 8 9.1153 0.1820 1.3768 23 6 7.2780 -1.1033 0.5896 24 1 -0.4850 0.8400 -0.0004 25 1 2.1504 -3.5253 0.0059 26 1 3.2680 -5.7057 -0.1918 27 1 5.7149 -5.8304 -0.4073 28 1 7.0617 -3.7741 -0.4370 29 1 4.9696 -0.2774 -1.7529 30 1 6.3119 1.7825 -1.7800 31 1 8.9148 0.5626 2.2429 32 1 7.5474 -1.9099 1.2556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243581001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:40 Heat of formation + Delta-G solvation = -27.072522 kcal Electronic energy + Delta-G solvation = -20018.840911 eV Core-core repulsion = 16743.146790 eV Total energy + Delta-G solvation = -3275.694121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.94987 -39.01038 -36.87165 -36.49844 -36.18974 -32.55710 -32.01653 -29.87494 -29.42721 -28.21663 -25.39479 -23.29372 -22.60587 -21.32698 -20.81406 -18.40459 -17.97063 -17.10335 -16.54829 -15.83635 -15.54976 -14.93150 -14.69654 -14.15874 -13.94032 -13.86966 -13.63529 -13.24837 -12.82421 -12.50797 -12.31358 -12.25521 -11.90505 -11.48836 -11.28397 -11.22436 -10.90390 -10.83256 -10.78609 -10.46539 -10.23741 -9.52906 -9.01153 -8.86830 -8.62795 -8.01906 -7.41100 -6.53671 -4.20247 1.07192 1.38069 2.01956 2.14956 2.23880 3.13743 3.18288 3.33653 3.66639 4.13451 4.16533 4.39385 4.66453 4.93584 4.98507 5.03600 5.40321 5.47256 5.51762 5.62027 5.72925 5.84444 5.97107 6.09563 6.22600 6.33992 6.42776 6.61156 6.69050 6.77856 7.01096 7.06330 7.16170 7.46132 7.60316 7.66144 7.90111 8.80892 9.40615 10.53336 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.007061 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.733254 B = 3964.632117 C = 5870.205662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.204 6.204 10 C 0.175 3.825 11 C -0.220 4.220 12 C -0.067 4.067 13 C -0.207 4.207 14 C -0.058 4.058 15 C -0.143 4.143 16 C 0.015 3.985 17 C -0.091 4.091 18 C -0.098 4.098 19 C -0.073 4.073 20 Cl -0.073 7.073 21 C 0.110 3.890 22 O -0.490 6.490 23 C -0.130 4.130 24 H 0.281 0.719 25 H 0.136 0.864 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.388 0.612 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.859 -0.940 0.283 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.108 6.108 10 C 0.121 3.879 11 C -0.239 4.239 12 C -0.085 4.085 13 C -0.226 4.226 14 C -0.076 4.076 15 C -0.144 4.144 16 C 0.015 3.985 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.100 4.100 20 Cl -0.045 7.045 21 C 0.065 3.935 22 O -0.300 6.300 23 C -0.149 4.149 24 H 0.091 0.909 25 H 0.154 0.846 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.244 0.756 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.107 -0.662 -0.163 13.125 hybrid contribution -0.179 1.001 0.445 1.110 sum 12.928 0.339 0.282 12.936 Atomic orbital electron populations 1.69632 1.05596 1.28691 1.47118 1.24436 0.94970 0.98752 0.95423 0.86336 0.80799 0.81600 0.79352 1.19543 1.20707 1.17749 1.20785 0.76751 0.96704 1.52482 0.87468 1.83577 1.22616 1.25395 1.79186 1.19017 0.90442 0.85790 0.92623 1.21251 1.01259 0.91694 1.09735 1.20915 0.94370 0.96800 0.96421 1.20608 0.93994 0.97363 1.10597 1.20731 0.98635 0.90796 0.97408 1.17764 0.89922 0.92047 1.14712 1.18602 0.92819 0.93471 0.93607 1.21326 0.99065 0.91938 0.98640 1.20904 0.93432 0.98684 0.98611 1.21323 0.96601 0.88758 1.03278 1.98334 1.72334 1.35865 1.97926 1.17975 0.88763 0.92474 0.94286 1.84829 1.30305 1.85485 1.29335 1.21420 0.94906 0.97682 1.00880 0.90874 0.84610 0.86989 0.87090 0.86565 0.84439 0.84820 0.75590 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.28 13.96 55.48 0.77 -23.51 16 2 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 3 Si 0.89 20.73 28.62 -169.99 -4.86 15.87 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.25 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.39 -10.39 9.95 30.88 0.31 -10.08 16 8 H 0.11 2.91 5.44 -52.49 -0.29 2.62 16 9 O -0.20 -4.96 6.94 0.34 0.00 -4.96 16 10 C 0.17 3.76 6.56 -38.74 -0.25 3.50 16 11 C -0.22 -4.43 9.16 -39.44 -0.36 -4.79 16 12 C -0.07 -1.12 10.03 -39.55 -0.40 -1.52 16 13 C -0.21 -3.20 10.03 -39.59 -0.40 -3.60 16 14 C -0.06 -0.93 9.51 -39.28 -0.37 -1.30 16 15 C -0.14 -2.67 5.49 -104.72 -0.57 -3.25 16 16 C 0.02 0.27 5.27 -104.92 -0.55 -0.28 16 17 C -0.09 -1.63 8.78 -39.22 -0.34 -1.97 16 18 C -0.10 -1.57 9.81 -39.62 -0.39 -1.96 16 19 C -0.07 -1.12 6.34 -39.29 -0.25 -1.37 16 20 Cl -0.07 -1.01 28.49 -51.86 -1.48 -2.49 16 21 C 0.11 1.65 6.69 -39.24 -0.26 1.39 16 22 O -0.49 -6.28 12.95 -19.51 -0.25 -6.53 16 23 C -0.13 -2.03 9.45 -39.09 -0.37 -2.40 16 24 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.14 2.86 5.64 -52.48 -0.30 2.57 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.12 1.58 8.04 -52.48 -0.42 1.16 16 29 H 0.14 2.54 7.68 -52.49 -0.40 2.14 16 30 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.39 3.34 9.06 45.56 0.41 3.76 16 32 H 0.14 1.89 8.04 -52.48 -0.42 1.46 16 LS Contribution 301.23 15.07 4.54 4.54 Total: -1.00 -28.49 301.23 -7.41 -35.91 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -1.82 Total: 7.05 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -4.31 Total: -25.88 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.77 Total: -23.51 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.25 Total: -11.49 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.86 Total: 15.87 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.48 Total: -2.49 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.49 -7.41 -35.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243581001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.833 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds