Wall clock time and date at job start Tue Mar 31 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86804 * 119.99976 * 2 1 4 4 H 1.48495 * 109.46823 * 269.99763 * 3 2 1 5 5 H 1.48496 * 109.46855 * 29.99511 * 3 2 1 6 6 H 1.48498 * 109.46928 * 149.99891 * 3 2 1 7 7 C 1.38647 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00213 * 0.02562 * 7 2 1 9 9 O 1.34821 * 119.99680 * 179.97438 * 7 2 1 10 10 C 1.35662 * 116.99640 * 185.05831 * 9 7 2 11 11 C 1.38754 * 120.13899 * 354.40248 * 10 9 7 12 12 C 1.38110 * 120.05206 * 179.97438 * 11 10 9 13 13 C 1.38447 * 120.32372 * 0.02562 * 12 11 10 14 14 C 1.38010 * 120.27027 * 359.97438 * 13 12 11 15 15 C 1.39286 * 119.94637 * 359.97438 * 14 13 12 16 16 C 1.48289 * 120.16278 * 180.02562 * 15 14 13 17 17 C 1.39427 * 120.08881 * 130.00302 * 16 15 14 18 18 C 1.38007 * 119.99408 * 180.02562 * 17 16 15 19 19 C 1.38351 * 120.17243 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 119.91571 * 180.02562 * 19 18 17 21 21 C 1.38915 * 120.17584 * 359.97438 * 19 18 17 22 22 O 1.35928 * 119.99561 * 179.97438 * 21 19 18 23 23 C 1.38477 * 120.00102 * 359.72403 * 21 19 18 24 24 H 0.96998 * 120.00165 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.97519 * 359.97372 * 11 10 9 26 26 H 1.08000 * 119.84187 * 180.28036 * 12 11 10 27 27 H 1.07996 * 119.86439 * 179.97438 * 13 12 11 28 28 H 1.08007 * 120.02712 * 180.02562 * 14 13 12 29 29 H 1.08002 * 120.00338 * 359.97438 * 17 16 15 30 30 H 1.08000 * 119.91381 * 180.02562 * 18 17 16 31 31 H 0.96703 * 114.00247 * 89.99886 * 22 21 19 32 32 H 1.08006 * 120.08047 * 180.27183 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4469 2.6527 0.6999 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3570 -1.2007 0.0000 10 6 3.9728 -2.4048 -0.1060 11 6 3.2250 -3.5735 -0.0909 12 6 3.8537 -4.7984 -0.1994 13 6 5.2309 -4.8687 -0.3233 14 6 5.9876 -3.7147 -0.3398 15 6 5.3651 -2.4733 -0.2322 16 6 6.1736 -1.2303 -0.2500 17 6 5.8274 -0.1835 -1.1034 18 6 6.5814 0.9722 -1.1187 19 6 7.6818 1.0956 -0.2893 20 17 8.6253 2.5527 -0.3136 21 6 8.0332 0.0571 0.5638 22 8 9.1153 0.1820 1.3768 23 6 7.2780 -1.1033 0.5896 24 1 -0.4850 0.8400 -0.0004 25 1 2.1504 -3.5253 0.0059 26 1 3.2680 -5.7057 -0.1918 27 1 5.7149 -5.8304 -0.4073 28 1 7.0617 -3.7741 -0.4370 29 1 4.9696 -0.2774 -1.7529 30 1 6.3119 1.7825 -1.7800 31 1 8.9148 0.5626 2.2429 32 1 7.5474 -1.9099 1.2556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243581001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:40 Heat of formation + Delta-G solvation = -43.658242 kcal Electronic energy + Delta-G solvation = -20019.560122 eV Core-core repulsion = 16743.146790 eV Total energy + Delta-G solvation = -3276.413332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32410 -40.37808 -38.33878 -37.65228 -37.39849 -34.47810 -33.37177 -31.11486 -30.87213 -29.58252 -27.25028 -24.61153 -23.87897 -22.83421 -22.15997 -19.85497 -19.58445 -18.62223 -17.76121 -17.09581 -16.89751 -16.51247 -15.98458 -15.73787 -15.56708 -15.39567 -14.88860 -14.60388 -14.29642 -14.07708 -13.99217 -13.49578 -13.28190 -12.88723 -12.67463 -12.59387 -12.45081 -12.25140 -12.11514 -11.96165 -11.58562 -11.27401 -10.92652 -10.18274 -9.85714 -9.40002 -8.91869 -8.51584 -6.22161 -0.21235 0.16694 0.61769 0.71391 1.06813 1.29535 1.31485 1.49331 2.24883 2.42696 2.76912 3.00488 3.08642 3.17464 3.68863 3.78816 4.12914 4.17309 4.25169 4.31667 4.48787 4.58418 4.63481 4.82405 4.87172 5.00643 5.09500 5.22726 5.34745 5.50006 5.51186 5.68484 5.72333 5.79207 5.89797 6.22051 6.69353 6.83730 7.57535 8.59775 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.007061 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.733254 B = 3964.632117 C = 5870.205662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.952 3.048 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.394 4.394 8 H 0.084 0.916 9 O -0.228 6.228 10 C 0.138 3.862 11 C -0.241 4.241 12 C -0.068 4.068 13 C -0.181 4.181 14 C -0.056 4.056 15 C -0.138 4.138 16 C -0.005 4.005 17 C -0.111 4.111 18 C -0.101 4.101 19 C -0.078 4.078 20 Cl -0.057 7.057 21 C 0.120 3.880 22 O -0.489 6.489 23 C -0.126 4.126 24 H 0.284 0.716 25 H 0.111 0.889 26 H 0.142 0.858 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.410 0.590 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.427 -1.797 0.600 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.181 4.181 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.471 4.471 8 H 0.101 0.899 9 O -0.134 6.134 10 C 0.088 3.912 11 C -0.260 4.260 12 C -0.086 4.086 13 C -0.199 4.199 14 C -0.074 4.074 15 C -0.139 4.139 16 C -0.005 4.005 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.105 4.105 20 Cl -0.028 7.028 21 C 0.075 3.925 22 O -0.302 6.302 23 C -0.144 4.144 24 H 0.093 0.907 25 H 0.129 0.871 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.169 0.831 29 H 0.136 0.864 30 H 0.165 0.835 31 H 0.269 0.731 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.715 -1.549 0.163 16.787 hybrid contribution -0.990 1.010 0.351 1.457 sum 15.725 -0.539 0.515 15.743 Atomic orbital electron populations 1.69716 1.06834 1.29446 1.50142 1.25121 0.95667 1.01647 0.95667 0.85478 0.79261 0.78159 0.79697 1.18556 1.19893 1.18216 1.20698 0.78190 0.95997 1.52166 0.89900 1.83543 1.20884 1.26837 1.82152 1.19558 0.91926 0.85450 0.94294 1.21301 1.00387 0.93178 1.11146 1.21271 0.95625 0.96345 0.95352 1.21166 0.93189 0.99113 1.06465 1.21203 1.00502 0.89742 0.95955 1.18106 0.88764 0.93908 1.13160 1.18674 0.93826 0.93248 0.94757 1.21269 0.99177 0.93101 0.99396 1.21032 0.93493 0.98441 0.98971 1.21457 0.96500 0.89600 1.02965 1.98340 1.71751 1.34870 1.97862 1.17966 0.88548 0.91916 0.94104 1.84780 1.29307 1.85671 1.30433 1.21548 0.94000 0.98534 1.00363 0.90673 0.87070 0.84030 0.82700 0.83055 0.86368 0.83527 0.73105 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 13.96 21.61 0.30 -53.63 16 2 C 0.02 1.01 5.49 84.83 0.47 1.47 16 3 Si 0.95 44.29 28.62 68.60 1.96 46.26 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.39 -22.24 9.95 67.92 0.68 -21.56 16 8 H 0.08 4.91 5.44 -2.91 -0.02 4.89 16 9 O -0.23 -11.60 6.94 -21.68 -0.15 -11.75 16 10 C 0.14 6.07 6.56 22.81 0.15 6.22 16 11 C -0.24 -9.94 9.16 22.36 0.20 -9.73 16 12 C -0.07 -2.13 10.03 22.29 0.22 -1.91 16 13 C -0.18 -4.80 10.03 22.27 0.22 -4.58 16 14 C -0.06 -1.60 9.51 22.47 0.21 -1.39 16 15 C -0.14 -5.00 5.49 -19.93 -0.11 -5.11 16 16 C 0.00 -0.16 5.27 -20.06 -0.11 -0.27 16 17 C -0.11 -3.94 8.78 22.50 0.20 -3.74 16 18 C -0.10 -3.12 9.81 22.24 0.22 -2.91 16 19 C -0.08 -2.23 6.34 22.46 0.14 -2.09 16 20 Cl -0.06 -1.43 28.49 -2.72 -0.08 -1.50 16 21 C 0.12 3.25 6.69 22.49 0.15 3.40 16 22 O -0.49 -10.71 12.95 -92.74 -1.20 -11.91 16 23 C -0.13 -3.58 9.45 22.59 0.21 -3.37 16 24 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.11 5.07 5.64 -2.91 -0.02 5.05 16 26 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 27 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.15 3.30 8.04 -2.91 -0.02 3.28 16 29 H 0.12 4.57 7.68 -2.91 -0.02 4.55 16 30 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.41 5.46 9.06 -74.06 -0.67 4.79 16 32 H 0.16 3.72 8.04 -2.91 -0.02 3.70 16 Total: -1.00 -64.73 301.23 4.21 -60.53 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.51 Total: 17.58 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 2.86 Total: -45.56 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.30 Total: -53.63 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.35 Total: -23.66 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.96 Total: 46.26 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -64.73 4.21 -60.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243581001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.867 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds