Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86800 * 120.00461 * 2 1 4 4 H 1.48494 * 109.47685 * 240.00656 * 3 2 1 5 5 H 1.48504 * 109.46568 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47237 * 119.99880 * 3 2 1 7 7 C 1.38635 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99577 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.35674 * 116.99946 * 185.06558 * 9 7 2 11 11 C 1.38732 * 120.13590 * 354.40700 * 10 9 7 12 12 C 1.38132 * 120.05465 * 179.97438 * 11 10 9 13 13 C 1.38447 * 120.32903 * 359.97438 * 12 11 10 14 14 C 1.38012 * 120.27493 * 359.71628 * 13 12 11 15 15 C 1.39328 * 119.93894 * 0.58071 * 14 13 12 16 16 C 1.48204 * 120.16229 * 179.69811 * 15 14 13 17 17 C 1.39471 * 120.06288 * 64.97522 * 16 15 14 18 18 C 1.37794 * 119.97874 * 180.27699 * 17 16 15 19 19 C 1.39134 * 120.09766 * 359.47288 * 18 17 16 20 20 S 1.76198 * 119.94349 * 180.27873 * 19 18 17 21 21 C 1.39030 * 120.11658 * 0.25172 * 19 18 17 22 22 C 1.38057 * 120.02290 * 0.02850 * 21 19 18 23 23 F 1.35102 * 120.04990 * 179.97438 * 22 21 19 24 24 H 0.97000 * 119.99645 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.97701 * 359.97344 * 11 10 9 26 26 H 1.07999 * 119.83511 * 179.97438 * 12 11 10 27 27 H 1.08004 * 119.85968 * 180.02562 * 13 12 11 28 28 H 1.08005 * 120.03111 * 180.30164 * 14 13 12 29 29 H 1.08002 * 120.01206 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.95010 * 179.75098 * 18 17 16 31 31 H 1.34504 * 103.00099 * 89.99386 * 20 19 18 32 32 H 1.08007 * 119.98621 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0696 -3.5036 0.1057 11 6 3.4554 -3.4403 0.0913 12 6 4.2020 -4.5974 0.2001 13 6 3.5744 -5.8252 0.3244 14 6 2.1966 -5.9033 0.3466 15 6 1.4325 -4.7440 0.2314 16 6 -0.0473 -4.8228 0.2480 17 6 -0.7112 -5.2550 1.3959 18 6 -2.0869 -5.3331 1.4075 19 6 -2.8158 -4.9709 0.2790 20 16 -4.5751 -5.0653 0.3008 21 6 -2.1585 -4.5340 -0.8655 22 6 -0.7800 -4.4594 -0.8844 23 9 -0.1407 -4.0355 -1.9965 24 1 -0.4849 0.8401 0.0004 25 1 3.9510 -2.4856 -0.0050 26 1 5.2806 -4.5441 0.1881 27 1 4.1655 -6.7251 0.4093 28 1 1.7112 -6.8627 0.4486 29 1 -0.1470 -5.5323 2.2741 30 1 -2.6003 -5.6717 2.2953 31 1 -4.9381 -3.8470 0.7403 32 1 -2.7264 -4.2538 -1.7404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587673.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = -17.557768 kcal Electronic energy + Delta-G solvation = -20179.122246 eV Core-core repulsion = 16918.257211 eV Total energy + Delta-G solvation = -3260.865035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.21930 -39.40065 -38.17536 -36.40933 -32.51357 -32.15322 -30.36422 -29.27141 -28.26004 -25.44750 -23.40775 -22.43367 -21.48362 -20.71245 -18.20323 -18.05227 -17.27841 -16.35961 -15.96521 -15.73799 -15.10311 -14.76015 -14.47011 -14.42788 -13.95321 -13.70549 -13.55338 -13.25859 -12.78209 -12.69629 -12.27891 -11.80415 -11.75625 -11.52161 -11.19835 -10.97245 -10.90511 -10.82486 -10.52405 -10.35978 -9.47344 -8.92919 -8.76185 -8.43501 -8.13146 -8.01890 -7.29486 -6.53305 -4.11884 1.00420 1.54760 1.77561 2.04310 2.28988 2.88726 3.07947 3.09028 3.11599 3.83291 3.89119 4.42606 4.74310 4.98030 5.05033 5.08724 5.15089 5.30942 5.56688 5.59768 5.71242 5.84379 5.96208 6.15670 6.24979 6.33986 6.41074 6.57907 6.60072 6.74260 6.97646 7.02646 7.18193 7.26198 7.30399 7.68862 7.89610 8.91466 9.58788 10.63498 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.006569 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.383704 B = 4261.275972 C = 5906.805576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.043 3.957 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.162 6.162 10 C 0.172 3.828 11 C -0.233 4.233 12 C -0.064 4.064 13 C -0.217 4.217 14 C -0.051 4.051 15 C -0.152 4.152 16 C -0.008 4.008 17 C -0.093 4.093 18 C -0.086 4.086 19 C -0.092 4.092 20 S -0.135 6.135 21 C -0.108 4.108 22 C 0.122 3.878 23 F -0.125 7.125 24 H 0.271 0.729 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -9.197 1.731 9.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.064 6.064 10 C 0.116 3.884 11 C -0.252 4.252 12 C -0.082 4.082 13 C -0.236 4.236 14 C -0.069 4.069 15 C -0.154 4.154 16 C -0.009 4.009 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.204 4.204 20 S 0.021 5.979 21 C -0.129 4.129 22 C 0.101 3.899 23 F -0.103 7.103 24 H 0.081 0.919 25 H 0.147 0.853 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.042 0.958 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.971 -9.191 1.593 9.790 hybrid contribution 1.505 2.132 0.101 2.612 sum -1.466 -7.059 1.694 7.406 Atomic orbital electron populations 1.70041 1.05969 1.27846 1.45135 1.25286 0.95833 0.98835 0.96299 0.85787 0.78765 0.79688 0.79274 1.19381 1.20237 1.19426 1.21301 0.91839 0.80731 1.53121 0.89008 1.83962 1.34208 1.11301 1.76954 1.19293 0.90138 0.87292 0.91632 1.21117 0.93394 0.99258 1.11475 1.20857 0.98628 0.92335 0.96425 1.20516 0.94035 0.97095 1.11926 1.20673 0.93474 0.95707 0.97088 1.17630 0.90130 0.91758 1.15851 1.18860 0.93125 0.96744 0.92220 1.21104 0.93519 0.99577 0.97048 1.21389 0.93738 0.98476 0.97122 1.20784 0.94662 1.08360 0.96626 1.85682 1.00992 1.21958 1.89224 1.21368 0.92542 0.99994 0.99032 1.17646 0.89671 0.98804 0.83789 1.91530 1.81974 1.87125 1.49664 0.91936 0.85250 0.87268 0.87242 0.86692 0.84650 0.84725 0.95765 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 2 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 3 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.80 9.49 30.88 0.29 -10.51 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 9 O -0.16 -4.51 8.97 0.35 0.00 -4.51 16 10 C 0.17 4.09 6.45 -38.73 -0.25 3.84 16 11 C -0.23 -4.97 9.16 -39.44 -0.36 -5.33 16 12 C -0.06 -1.14 10.03 -39.54 -0.40 -1.54 16 13 C -0.22 -3.61 10.03 -39.59 -0.40 -4.01 16 14 C -0.05 -0.90 9.73 -39.26 -0.38 -1.28 16 15 C -0.15 -3.17 5.01 -104.73 -0.53 -3.69 16 16 C -0.01 -0.17 4.95 -104.80 -0.52 -0.69 16 17 C -0.09 -1.53 9.72 -39.28 -0.38 -1.91 16 18 C -0.09 -1.30 9.77 -39.41 -0.39 -1.69 16 19 C -0.09 -1.48 6.12 -38.96 -0.24 -1.72 16 20 S -0.14 -1.84 25.77 -107.50 -2.77 -4.61 16 21 C -0.11 -1.92 9.75 -39.35 -0.38 -2.31 16 22 C 0.12 2.51 6.96 -39.11 -0.27 2.23 16 23 F -0.12 -2.83 16.67 2.25 0.04 -2.79 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 25 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 29 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.08 1.05 9.07 97.61 0.89 1.94 16 32 H 0.14 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -30.05 305.19 -8.05 -38.10 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -1.36 Total: 5.48 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -4.30 Total: -27.54 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.76 Total: -23.97 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.00 Total: -4.51 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.77 Total: -4.61 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.05 -8.05 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587673.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.538 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds