Wall clock time and date at job start Tue Mar 31 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86800 * 120.00461 * 2 1 4 4 H 1.48494 * 109.47685 * 240.00656 * 3 2 1 5 5 H 1.48504 * 109.46568 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47237 * 119.99880 * 3 2 1 7 7 C 1.38635 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99577 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.35674 * 116.99946 * 185.06558 * 9 7 2 11 11 C 1.38732 * 120.13590 * 354.40700 * 10 9 7 12 12 C 1.38132 * 120.05465 * 179.97438 * 11 10 9 13 13 C 1.38447 * 120.32903 * 359.97438 * 12 11 10 14 14 C 1.38012 * 120.27493 * 359.71628 * 13 12 11 15 15 C 1.39328 * 119.93894 * 0.58071 * 14 13 12 16 16 C 1.48204 * 120.16229 * 179.69811 * 15 14 13 17 17 C 1.39471 * 120.06288 * 64.97522 * 16 15 14 18 18 C 1.37794 * 119.97874 * 180.27699 * 17 16 15 19 19 C 1.39134 * 120.09766 * 359.47288 * 18 17 16 20 20 S 1.76198 * 119.94349 * 180.27873 * 19 18 17 21 21 C 1.39030 * 120.11658 * 0.25172 * 19 18 17 22 22 C 1.38057 * 120.02290 * 0.02850 * 21 19 18 23 23 F 1.35102 * 120.04990 * 179.97438 * 22 21 19 24 24 H 0.97000 * 119.99645 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.97701 * 359.97344 * 11 10 9 26 26 H 1.07999 * 119.83511 * 179.97438 * 12 11 10 27 27 H 1.08004 * 119.85968 * 180.02562 * 13 12 11 28 28 H 1.08005 * 120.03111 * 180.30164 * 14 13 12 29 29 H 1.08002 * 120.01206 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.95010 * 179.75098 * 18 17 16 31 31 H 1.34504 * 103.00099 * 89.99386 * 20 19 18 32 32 H 1.08007 * 119.98621 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0696 -3.5036 0.1057 11 6 3.4554 -3.4403 0.0913 12 6 4.2020 -4.5974 0.2001 13 6 3.5744 -5.8252 0.3244 14 6 2.1966 -5.9033 0.3466 15 6 1.4325 -4.7440 0.2314 16 6 -0.0473 -4.8228 0.2480 17 6 -0.7112 -5.2550 1.3959 18 6 -2.0869 -5.3331 1.4075 19 6 -2.8158 -4.9709 0.2790 20 16 -4.5751 -5.0653 0.3008 21 6 -2.1585 -4.5340 -0.8655 22 6 -0.7800 -4.4594 -0.8844 23 9 -0.1407 -4.0355 -1.9965 24 1 -0.4849 0.8401 0.0004 25 1 3.9510 -2.4856 -0.0050 26 1 5.2806 -4.5441 0.1881 27 1 4.1655 -6.7251 0.4093 28 1 1.7112 -6.8627 0.4486 29 1 -0.1470 -5.5323 2.2741 30 1 -2.6003 -5.6717 2.2953 31 1 -4.9381 -3.8470 0.7403 32 1 -2.7264 -4.2538 -1.7404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587673.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:47 Heat of formation + Delta-G solvation = -33.846644 kcal Electronic energy + Delta-G solvation = -20179.828585 eV Core-core repulsion = 16918.257211 eV Total energy + Delta-G solvation = -3261.571373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.84465 -40.98364 -39.62559 -38.04528 -34.35270 -33.68570 -31.71519 -30.80399 -29.77039 -27.37342 -24.82045 -23.84585 -23.09311 -22.18363 -19.84352 -19.50518 -18.91699 -17.73560 -17.41404 -17.21981 -16.70412 -16.39583 -16.12723 -15.87774 -15.48250 -15.37403 -15.03818 -14.62461 -14.41466 -14.27836 -13.68075 -13.55915 -13.13787 -13.05933 -12.66803 -12.46639 -12.40484 -12.34591 -12.18998 -11.66185 -11.22789 -10.83019 -10.14730 -9.84822 -9.49013 -9.21398 -8.94872 -8.49653 -6.16465 -0.33645 0.17365 0.47538 0.62838 0.74108 1.30918 1.41636 1.46319 1.73068 2.13654 2.48141 2.80385 3.12424 3.34348 3.44789 3.65366 3.74809 4.07018 4.17271 4.25694 4.27494 4.49282 4.56958 4.66394 4.85116 5.00262 5.04955 5.09033 5.10315 5.23012 5.28908 5.59073 5.62389 5.73189 5.79033 5.97930 6.19820 6.94807 7.75249 8.72016 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.006569 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.383704 B = 4261.275972 C = 5906.805576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.018 4.018 3 Si 1.013 2.987 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.212 6.212 10 C 0.130 3.870 11 C -0.252 4.252 12 C -0.063 4.063 13 C -0.191 4.191 14 C -0.052 4.052 15 C -0.158 4.158 16 C -0.034 4.034 17 C -0.091 4.091 18 C -0.073 4.073 19 C -0.101 4.101 20 S -0.101 6.101 21 C -0.116 4.116 22 C 0.083 3.917 23 F -0.151 7.151 24 H 0.270 0.730 25 H 0.119 0.881 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.174 0.826 31 H 0.079 0.921 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -11.478 3.161 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.833 3.167 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.118 6.118 10 C 0.079 3.921 11 C -0.271 4.271 12 C -0.081 4.081 13 C -0.210 4.210 14 C -0.070 4.070 15 C -0.160 4.160 16 C -0.035 4.035 17 C -0.111 4.111 18 C -0.093 4.093 19 C -0.213 4.213 20 S 0.055 5.945 21 C -0.137 4.137 22 C 0.062 3.938 23 F -0.129 7.129 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.165 0.835 27 H 0.174 0.826 28 H 0.169 0.831 29 H 0.178 0.822 30 H 0.191 0.809 31 H 0.043 0.957 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.018 -11.533 3.026 12.093 hybrid contribution 1.258 2.458 -0.304 2.778 sum -0.760 -9.075 2.722 9.505 Atomic orbital electron populations 1.70195 1.07902 1.28570 1.48487 1.26492 0.96770 1.02508 0.95856 0.84719 0.77479 0.74589 0.79917 1.18366 1.19780 1.18022 1.21763 0.92473 0.81597 1.53209 0.88276 1.83944 1.35392 1.12136 1.80281 1.19931 0.91458 0.87499 0.93261 1.21277 0.92884 1.00517 1.12409 1.21291 1.00430 0.91448 0.94941 1.21134 0.94003 0.98223 1.07602 1.21170 0.94083 0.95954 0.95759 1.18084 0.91286 0.91764 1.14842 1.19098 0.93041 0.98148 0.93174 1.21421 0.94444 0.98689 0.96551 1.21849 0.93231 0.96407 0.97836 1.21125 0.96693 1.07283 0.96184 1.85558 0.98092 1.21566 1.89246 1.21560 0.91724 1.00113 1.00297 1.18093 0.90917 1.00904 0.83866 1.91447 1.82623 1.87865 1.51008 0.92090 0.86314 0.83537 0.82583 0.83138 0.82190 0.80884 0.95729 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.10 13.67 21.61 0.30 -55.80 16 2 C -0.02 -1.03 5.49 84.83 0.47 -0.57 16 3 Si 1.01 43.13 29.55 68.60 2.03 45.16 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.41 -24.08 9.49 67.91 0.64 -23.44 16 8 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 9 O -0.21 -12.58 8.97 -21.66 -0.19 -12.78 16 10 C 0.13 6.43 6.45 22.82 0.15 6.58 16 11 C -0.25 -10.85 9.16 22.36 0.20 -10.65 16 12 C -0.06 -2.08 10.03 22.29 0.22 -1.85 16 13 C -0.19 -5.55 10.03 22.27 0.22 -5.32 16 14 C -0.05 -1.67 9.73 22.48 0.22 -1.45 16 15 C -0.16 -6.62 5.01 -19.94 -0.10 -6.72 16 16 C -0.03 -1.35 4.95 -19.98 -0.10 -1.45 16 17 C -0.09 -2.90 9.72 22.46 0.22 -2.68 16 18 C -0.07 -2.03 9.77 22.38 0.22 -1.81 16 19 C -0.10 -3.12 6.12 22.68 0.14 -2.98 16 20 S -0.10 -2.55 25.77 -56.49 -1.46 -4.01 16 21 C -0.12 -4.23 9.75 22.42 0.22 -4.01 16 22 C 0.08 3.58 6.96 22.58 0.16 3.73 16 23 F -0.15 -7.39 16.67 44.97 0.75 -6.64 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 26 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 27 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 28 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 29 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.08 1.98 9.07 73.35 0.67 2.64 16 32 H 0.15 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -71.83 305.19 6.15 -65.69 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.84 Total: 21.01 kcal Atomic # 6 Polarization: -55.51 SS G_CDS: 2.88 Total: -52.63 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.30 Total: -55.80 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.19 Total: -12.78 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 0.75 Total: -6.64 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -1.46 Total: -4.01 kcal Total: -71.83 6.15 -65.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587673.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.841 kcal (2) G-P(sol) polarization free energy of solvation -71.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds